Wall clock time and date at job start Tue Mar 31 2020 12:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 120.00416 * 2 1 4 4 H 1.48502 * 109.47295 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46974 * 300.00344 * 3 2 1 6 6 H 1.48506 * 109.46568 * 60.00157 * 3 2 1 7 7 C 1.38814 * 119.99735 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00088 * 159.81230 * 7 2 1 9 9 N 1.36946 * 120.00198 * 339.81421 * 7 2 1 10 10 C 1.46975 * 120.77261 * 218.50754 * 9 7 2 11 11 C 1.53163 * 109.18874 * 233.91319 * 10 9 7 12 12 C 1.53162 * 109.54637 * 305.77809 * 11 10 9 13 13 H 1.08997 * 110.06371 * 297.89838 * 12 11 10 14 14 C 1.53142 * 110.20322 * 59.47746 * 12 11 10 15 15 H 1.09000 * 109.25392 * 181.52157 * 14 12 11 16 16 C 1.52859 * 109.36049 * 61.98841 * 14 12 11 17 17 C 1.53110 * 109.34283 * 62.03191 * 16 14 12 18 18 C 1.53609 * 109.41018 * 299.21523 * 17 16 14 19 19 N 1.46953 * 108.77128 * 54.30776 * 18 17 16 20 20 C 1.34767 * 120.84631 * 125.93402 * 19 18 17 21 21 O 1.21699 * 120.00304 * 352.34552 * 20 19 18 22 22 C 1.46586 * 120.00109 * 172.06696 * 20 19 18 23 23 C 1.36644 * 125.45793 * 156.57303 * 22 20 19 24 24 C 1.37472 * 113.29541 * 179.87005 * 23 22 20 25 25 C 1.33821 * 115.10288 * 0.42214 * 24 23 22 26 26 S 1.70619 * 110.95029 * 359.76596 * 25 24 23 27 27 C 1.46888 * 120.77407 * 38.52103 * 9 7 2 28 28 H 0.97002 * 120.00110 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.61437 * 354.06755 * 10 9 7 30 30 H 1.08997 * 109.61399 * 114.41936 * 10 9 7 31 31 H 1.08998 * 110.07923 * 185.37181 * 11 10 9 32 32 H 1.09000 * 108.85708 * 65.42865 * 11 10 9 33 33 H 1.08997 * 109.49117 * 181.99507 * 16 14 12 34 34 H 1.08999 * 109.48971 * 302.04309 * 16 14 12 35 35 H 1.09003 * 109.47131 * 59.35580 * 17 16 14 36 36 H 1.09003 * 109.47396 * 179.34625 * 17 16 14 37 37 H 1.09003 * 109.70946 * 294.50236 * 18 17 16 38 38 H 1.09004 * 109.63769 * 174.07040 * 18 17 16 39 39 H 1.07997 * 123.35529 * 0.02562 * 23 22 20 40 40 H 1.08001 * 122.45251 * 180.19368 * 24 23 22 41 41 H 1.07993 * 124.52475 * 179.74519 * 25 24 23 42 42 H 1.09003 * 109.51632 * 6.72064 * 27 9 7 43 43 H 1.09000 * 109.57056 * 246.57778 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8915 2.3963 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0404 -1.2308 -0.3233 9 7 1.3886 -2.3519 0.4082 10 6 2.1117 -3.3571 1.1999 11 6 1.9972 -4.7195 0.5093 12 6 0.5209 -5.0505 0.2706 13 1 -0.0050 -5.1220 1.2226 14 6 -0.1265 -3.9763 -0.6081 15 1 -1.1817 -4.2124 -0.7457 16 6 0.5660 -3.9508 -1.9706 17 6 0.3746 -5.3034 -2.6621 18 6 1.0055 -6.4097 -1.8031 19 7 0.4432 -6.3344 -0.4475 20 6 -0.1240 -7.4138 0.1262 21 8 -0.3017 -8.4264 -0.5251 22 6 -0.5216 -7.3704 1.5365 23 6 -1.4732 -8.1611 2.1165 24 6 -1.6440 -7.9114 3.4575 25 6 -0.8667 -6.9440 3.9584 26 16 0.1444 -6.2874 2.7510 27 6 -0.0164 -2.6094 0.0653 28 1 -0.4850 0.8400 -0.0004 29 1 3.1611 -3.0738 1.2805 30 1 1.6731 -3.4234 2.1955 31 1 2.4468 -5.4933 1.1315 32 1 2.5184 -4.6746 -0.4469 33 1 0.1305 -3.1632 -2.5853 34 1 1.6303 -3.7590 -1.8340 35 1 -0.6902 -5.4999 -2.7875 36 1 0.8579 -5.2837 -3.6389 37 1 2.0855 -6.2694 -1.7582 38 1 0.7807 -7.3838 -2.2375 39 1 -2.0336 -8.9094 1.5759 40 1 -2.3561 -8.4536 4.0619 41 1 -0.8781 -6.6218 4.9890 42 1 -0.3720 -1.8375 -0.6172 43 1 -0.6211 -2.6004 0.9721 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021507993.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:52 Heat of formation + Delta-G solvation = 27.910950 kcal Electronic energy + Delta-G solvation = -26133.409677 eV Core-core repulsion = 22691.882654 eV Total energy + Delta-G solvation = -3441.527023 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.37686 -38.43967 -37.20869 -35.31795 -33.03402 -32.41224 -30.63100 -29.63333 -29.30881 -25.90057 -25.29468 -24.20971 -22.61055 -22.17160 -21.55009 -20.09791 -19.20829 -18.22493 -17.67338 -16.92958 -15.86745 -15.77503 -15.32558 -15.04221 -14.90555 -14.33840 -13.90667 -13.54088 -13.43426 -13.10168 -12.94008 -12.85978 -12.70233 -12.64929 -12.46219 -12.19709 -12.02155 -11.59920 -11.14303 -11.08831 -10.80200 -10.75955 -10.66984 -10.36267 -10.21158 -10.08953 -9.94678 -9.91468 -9.73861 -9.53292 -8.89251 -8.43328 -8.33963 -8.25888 -6.59890 -5.92594 -3.39816 0.57188 1.51219 1.95808 2.44365 3.08488 3.30480 3.32481 3.42357 3.43581 4.42008 4.59899 4.98335 5.00582 5.22554 5.27806 5.29923 5.32656 5.34911 5.45563 5.46654 5.51686 5.63697 5.77334 5.88658 5.95229 5.99360 6.15080 6.17643 6.20852 6.30113 6.32694 6.35171 6.38677 6.59754 6.66132 6.74648 6.77220 6.87241 7.02880 7.30235 7.56249 7.72731 7.80880 8.24552 8.49570 9.17066 9.74824 10.36885 11.12287 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.017230 B = 0.004664 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.677130 B = 6001.726007 C = 6993.300314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.024 3.976 3 Si 0.888 3.112 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.287 1.287 7 C -0.261 4.261 8 H 0.066 0.934 9 N -0.589 5.589 10 C 0.149 3.851 11 C -0.147 4.147 12 C 0.137 3.863 13 H 0.090 0.910 14 C -0.114 4.114 15 H 0.056 0.944 16 C -0.101 4.101 17 C -0.134 4.134 18 C 0.116 3.884 19 N -0.602 5.602 20 C 0.590 3.410 21 O -0.545 6.545 22 C -0.270 4.270 23 C -0.064 4.064 24 C -0.154 4.154 25 C -0.261 4.261 26 S 0.251 5.749 27 C 0.160 3.840 28 H 0.256 0.744 29 H 0.059 0.941 30 H 0.019 0.981 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.086 0.914 39 H 0.148 0.852 40 H 0.139 0.861 41 H 0.164 0.836 42 H 0.120 0.880 43 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.768 -12.245 3.568 12.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.176 4.176 3 Si 0.717 3.283 4 H -0.202 1.202 5 H -0.218 1.218 6 H -0.214 1.214 7 C -0.390 4.390 8 H 0.083 0.917 9 N -0.312 5.312 10 C 0.022 3.978 11 C -0.187 4.187 12 C 0.034 3.966 13 H 0.106 0.894 14 C -0.135 4.135 15 H 0.074 0.926 16 C -0.138 4.138 17 C -0.173 4.173 18 C -0.006 4.006 19 N -0.333 5.333 20 C 0.378 3.622 21 O -0.425 6.425 22 C -0.391 4.391 23 C -0.097 4.097 24 C -0.185 4.185 25 C -0.398 4.398 26 S 0.520 5.480 27 C 0.034 3.966 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.037 0.963 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.104 0.896 39 H 0.166 0.834 40 H 0.157 0.843 41 H 0.182 0.818 42 H 0.137 0.863 43 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 0.134 -11.481 3.242 11.931 hybrid contribution -0.860 -0.251 0.308 0.947 sum -0.726 -11.733 3.550 12.280 Atomic orbital electron populations 1.69841 1.05701 1.25636 1.52169 1.25371 0.95314 0.98089 0.98835 0.86460 0.80096 0.84416 0.77333 1.20151 1.21824 1.21391 1.19039 0.96579 0.84145 1.39271 0.91672 1.43963 1.08780 1.19195 1.59242 1.20872 0.96879 0.87300 0.92768 1.22529 0.94595 0.99541 1.02082 1.21971 0.97772 0.81908 0.94991 0.89361 1.22056 0.97745 0.98091 0.95626 0.92564 1.21408 1.02232 0.94903 0.95299 1.22056 1.00936 0.95922 0.98354 1.21667 0.97352 1.00268 0.81333 1.48400 1.57712 1.10509 1.16706 1.17017 0.77296 0.83168 0.84760 1.90770 1.56056 1.31925 1.63753 1.24695 1.08646 1.07204 0.98531 1.20693 0.96467 0.98441 0.94111 1.19948 1.02986 1.00519 0.95015 1.25817 1.04921 1.03039 1.06015 1.83887 1.37582 1.31299 0.95195 1.21271 0.85631 0.91836 0.97888 0.93326 0.92204 0.96278 0.92779 0.91203 0.91747 0.90725 0.92104 0.91304 0.91412 0.89560 0.83422 0.84331 0.81815 0.86252 0.96935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.93 10.46 55.49 0.58 -23.35 16 2 C 0.02 0.62 5.45 -17.43 -0.09 0.52 16 3 Si 0.89 20.38 29.60 -169.99 -5.03 15.35 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.26 -6.59 9.47 -15.05 -0.14 -6.74 16 8 H 0.07 1.64 7.91 -52.49 -0.42 1.23 16 9 N -0.59 -13.32 2.67 -172.58 -0.46 -13.78 16 10 C 0.15 2.81 6.49 -3.70 -0.02 2.78 16 11 C -0.15 -2.38 4.75 -26.56 -0.13 -2.51 16 12 C 0.14 2.25 1.87 -67.33 -0.13 2.13 16 13 H 0.09 1.45 3.60 -21.85 -0.08 1.37 16 14 C -0.11 -2.07 2.45 -90.74 -0.22 -2.29 16 15 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 16 C -0.10 -1.72 4.86 -26.75 -0.13 -1.85 16 17 C -0.13 -1.94 6.10 -26.36 -0.16 -2.10 16 18 C 0.12 1.70 5.99 -3.48 -0.02 1.68 16 19 N -0.60 -9.64 2.65 -166.15 -0.44 -10.08 16 20 C 0.59 10.01 7.61 -12.90 -0.10 9.91 16 21 O -0.54 -10.46 16.38 5.19 0.09 -10.38 16 22 C -0.27 -4.05 5.96 -36.79 -0.22 -4.27 16 23 C -0.06 -0.84 10.09 -40.44 -0.41 -1.25 16 24 C -0.15 -1.73 10.15 -41.41 -0.42 -2.15 16 25 C -0.26 -2.93 10.92 29.18 0.32 -2.61 16 26 S 0.25 3.28 18.42 -107.50 -1.98 1.30 16 27 C 0.16 3.52 4.83 -3.95 -0.02 3.50 16 28 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 29 H 0.06 1.11 7.94 -51.93 -0.41 0.70 16 30 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.79 7.91 -51.93 -0.41 0.38 16 32 H 0.07 1.17 5.41 -51.93 -0.28 0.88 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.07 1.38 6.22 -51.93 -0.32 1.05 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.93 7.25 -51.93 -0.38 0.56 16 38 H 0.09 1.28 7.02 -51.93 -0.36 0.91 16 39 H 0.15 1.82 8.06 -52.49 -0.42 1.40 16 40 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 41 H 0.16 1.43 8.06 -52.49 -0.42 1.01 16 42 H 0.12 3.00 5.67 -51.93 -0.29 2.71 16 43 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 338.74 15.07 5.10 5.10 Total: -1.00 -28.28 338.74 -9.93 -38.21 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -5.90 Total: 2.88 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: -1.89 Total: -5.25 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: -0.32 Total: -47.21 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.03 Total: 15.35 kcal Atomic # 16 Polarization: 3.28 SS G_CDS: -1.98 Total: 1.30 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.28 -9.93 -38.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021507993.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.121 kcal (2) G-P(sol) polarization free energy of solvation -28.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds