Wall clock time and date at job start Tue Mar 31 2020 12:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 119.99856 * 2 1 4 4 H 1.48498 * 109.47188 * 96.33458 * 3 2 1 5 5 H 1.48504 * 109.47206 * 216.33218 * 3 2 1 6 6 H 1.48499 * 109.47288 * 336.33194 * 3 2 1 7 7 C 1.38818 * 120.00090 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99711 * 0.88970 * 7 2 1 9 9 N 1.36934 * 119.99883 * 180.89273 * 7 2 1 10 10 C 1.46973 * 120.77622 * 38.46547 * 9 7 2 11 11 C 1.53525 * 108.38240 * 125.66217 * 10 9 7 12 12 C 1.53168 * 109.50686 * 55.56971 * 11 10 9 13 13 H 1.08991 * 110.65098 * 60.85205 * 12 11 10 14 14 C 1.53133 * 109.59082 * 299.29410 * 12 11 10 15 15 H 1.09003 * 109.25069 * 179.58675 * 14 12 11 16 16 C 1.52855 * 108.71915 * 298.73727 * 14 12 11 17 17 C 1.53230 * 109.28241 * 296.77906 * 16 14 12 18 18 C 1.53139 * 108.82396 * 61.85018 * 17 16 14 19 19 N 1.46948 * 109.02542 * 305.52453 * 18 17 16 20 20 C 1.34770 * 120.84542 * 234.04801 * 19 18 17 21 21 O 1.21706 * 120.00179 * 162.81110 * 20 19 18 22 22 C 1.46578 * 119.99970 * 342.80847 * 20 19 18 23 23 C 1.36649 * 125.46174 * 172.04441 * 22 20 19 24 24 C 1.37467 * 113.30120 * 179.97438 * 23 22 20 25 25 C 1.33817 * 115.10350 * 0.02562 * 24 23 22 26 26 S 1.70624 * 110.94856 * 359.76117 * 25 24 23 27 27 C 1.46894 * 120.77108 * 218.74625 * 9 7 2 28 28 H 0.96996 * 120.00620 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.61071 * 245.44830 * 10 9 7 30 30 H 1.09000 * 109.61065 * 5.96503 * 10 9 7 31 31 H 1.09001 * 109.58837 * 295.50007 * 11 10 9 32 32 H 1.08995 * 109.37690 * 175.51369 * 11 10 9 33 33 H 1.09003 * 109.49138 * 57.53556 * 16 14 12 34 34 H 1.09007 * 109.48894 * 177.60718 * 16 14 12 35 35 H 1.08995 * 110.12949 * 301.85075 * 17 16 14 36 36 H 1.09007 * 109.46691 * 181.45276 * 17 16 14 37 37 H 1.08997 * 109.54769 * 185.65447 * 18 17 16 38 38 H 1.09008 * 109.61825 * 65.42907 * 18 17 16 39 39 H 1.08008 * 123.34837 * 359.97438 * 23 22 20 40 40 H 1.08007 * 122.45279 * 180.02562 * 24 23 22 41 41 H 1.07999 * 124.52851 * 180.02562 * 25 24 23 42 42 H 1.09003 * 109.51547 * 353.23258 * 27 9 7 43 43 H 1.08994 * 109.51735 * 113.34244 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.6314 1.9692 1.3915 5 1 3.4744 1.4825 -0.8295 6 1 1.3871 2.6875 -0.5620 7 6 2.0103 -1.2022 -0.0005 8 1 1.4704 -2.1374 -0.0155 9 7 3.3795 -1.2022 0.0179 10 6 4.1208 -0.2200 0.8216 11 6 5.0859 -0.9785 1.7437 12 6 5.9868 -1.8888 0.9036 13 1 6.5785 -1.3018 0.2012 14 6 5.1269 -2.9044 0.1459 15 1 5.7727 -3.5443 -0.4555 16 6 4.3717 -3.7620 1.1611 17 6 5.3780 -4.5552 2.0014 18 6 6.2664 -3.5710 2.7676 19 7 6.8743 -2.6323 1.8144 20 6 8.2099 -2.4566 1.7739 21 8 8.7260 -1.9352 0.8028 22 6 9.0410 -2.8934 2.8995 23 6 10.4073 -2.9125 2.9157 24 6 10.9307 -3.3690 4.1021 25 6 10.0264 -3.7129 5.0266 26 16 8.4397 -3.4710 4.4476 27 6 4.1417 -2.1801 -0.7699 28 1 -0.4851 0.8400 0.0004 29 1 4.6835 0.4416 0.1630 30 1 3.4224 0.3639 1.4212 31 1 4.5171 -1.5828 2.4504 32 1 5.7008 -0.2635 2.2903 33 1 3.7694 -3.1196 1.8034 34 1 3.7227 -4.4619 0.6346 35 1 5.9979 -5.1774 1.3559 36 1 4.8418 -5.1875 2.7092 37 1 7.0504 -4.1184 3.2908 38 1 5.6636 -3.0190 3.4889 39 1 11.0154 -2.6000 2.0796 40 1 11.9941 -3.4446 4.2754 41 1 10.2686 -4.0889 6.0096 42 1 3.4573 -2.9034 -1.2132 43 1 4.6885 -1.6648 -1.5595 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021507994.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:54 Heat of formation + Delta-G solvation = 15.185655 kcal Electronic energy + Delta-G solvation = -25790.143078 eV Core-core repulsion = 22348.064245 eV Total energy + Delta-G solvation = -3442.078834 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.79363 -39.83233 -38.31112 -37.27978 -34.58298 -33.96154 -32.54600 -31.59679 -30.55997 -27.43605 -26.90327 -25.40313 -24.19436 -23.88476 -23.04664 -21.85780 -20.10616 -19.66680 -18.93709 -18.63520 -17.62918 -17.22253 -16.73491 -16.50055 -16.15375 -15.94288 -15.75183 -15.30758 -14.89224 -14.65549 -14.56768 -14.28493 -13.98693 -13.87171 -13.76878 -13.66953 -13.59689 -13.40864 -13.09887 -12.76330 -12.37397 -12.33916 -12.16696 -11.87856 -11.73325 -11.60775 -11.46562 -11.29839 -11.19483 -10.99549 -10.69909 -9.97614 -9.57582 -9.39970 -8.75836 -8.14175 -5.62354 -0.49314 0.49930 0.97760 1.28912 1.40191 1.41077 1.48316 1.82243 2.09835 2.40765 3.16732 3.24662 3.41676 3.72526 3.80813 3.85962 4.00465 4.11668 4.16826 4.24044 4.31250 4.36656 4.42447 4.48754 4.56372 4.57788 4.71246 4.78299 4.83915 4.88111 4.93966 4.96913 5.03160 5.07577 5.13066 5.20813 5.27411 5.33328 5.38484 5.49012 5.61199 5.97199 6.18347 6.31562 6.93293 6.95496 7.59775 8.07265 9.04271 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.023989 B = 0.003777 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.931353 B = 7410.787997 C = 7668.502570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C -0.028 4.028 3 Si 0.953 3.047 4 H -0.271 1.271 5 H -0.260 1.260 6 H -0.315 1.315 7 C -0.242 4.242 8 H 0.054 0.946 9 N -0.614 5.614 10 C 0.117 3.883 11 C -0.131 4.131 12 C 0.164 3.836 13 H 0.075 0.925 14 C -0.101 4.101 15 H 0.075 0.925 16 C -0.105 4.105 17 C -0.120 4.120 18 C 0.095 3.905 19 N -0.606 5.606 20 C 0.587 3.413 21 O -0.577 6.577 22 C -0.308 4.308 23 C -0.058 4.058 24 C -0.161 4.161 25 C -0.240 4.240 26 S 0.260 5.740 27 C 0.154 3.846 28 H 0.261 0.739 29 H 0.029 0.971 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.144 0.856 40 H 0.165 0.835 41 H 0.196 0.804 42 H 0.063 0.937 43 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.687 -11.086 13.134 26.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.223 4.223 3 Si 0.783 3.217 4 H -0.198 1.198 5 H -0.185 1.185 6 H -0.245 1.245 7 C -0.372 4.372 8 H 0.072 0.928 9 N -0.339 5.339 10 C -0.008 4.008 11 C -0.170 4.170 12 C 0.061 3.939 13 H 0.093 0.907 14 C -0.122 4.122 15 H 0.093 0.907 16 C -0.143 4.143 17 C -0.159 4.159 18 C -0.029 4.029 19 N -0.338 5.338 20 C 0.378 3.622 21 O -0.459 6.459 22 C -0.428 4.428 23 C -0.093 4.093 24 C -0.191 4.191 25 C -0.377 4.377 26 S 0.529 5.471 27 C 0.028 3.972 28 H 0.070 0.930 29 H 0.047 0.953 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.121 0.879 37 H 0.116 0.884 38 H 0.104 0.896 39 H 0.162 0.838 40 H 0.182 0.818 41 H 0.214 0.786 42 H 0.082 0.918 43 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 19.403 -10.966 13.293 25.951 hybrid contribution 1.316 1.367 -0.982 2.136 sum 20.718 -9.600 12.311 25.942 Atomic orbital electron populations 1.69865 1.07323 1.27200 1.56311 1.26125 0.95806 1.01278 0.99103 0.85922 0.77900 0.79651 0.78188 1.19804 1.18509 1.24473 1.18739 0.81133 0.92563 1.44790 0.92844 1.44310 1.01604 1.36837 1.51163 1.21568 0.93856 0.92343 0.93064 1.22344 0.97347 0.98769 0.98575 1.21063 0.89558 0.92419 0.90871 0.90664 1.21719 0.96591 0.96583 0.97295 0.90706 1.21469 0.97371 0.97841 0.97588 1.21909 0.97138 0.97128 0.99677 1.22282 0.97833 0.91306 0.91450 1.48219 1.04775 1.42607 1.38163 1.17434 0.81629 0.77907 0.85278 1.90775 1.73344 1.47105 1.34648 1.24601 0.98463 1.18928 1.00769 1.20990 0.92472 0.96286 0.99502 1.20194 1.02703 1.03879 0.92325 1.26250 0.99739 1.05874 1.05883 1.83213 1.04694 1.57151 1.02081 1.20954 0.92913 0.91367 0.91938 0.92961 0.95266 0.92371 0.90218 0.91454 0.91935 0.92036 0.91152 0.87858 0.88428 0.89591 0.83849 0.81802 0.78642 0.91849 0.95767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.86 13.97 21.65 0.30 -59.55 16 2 C -0.03 -1.62 5.46 84.86 0.46 -1.15 16 3 Si 0.95 46.85 24.30 68.60 1.67 48.52 16 4 H -0.27 -12.50 6.55 99.48 0.65 -11.85 16 5 H -0.26 -12.38 6.01 99.48 0.60 -11.78 16 6 H -0.32 -15.89 7.11 99.48 0.71 -15.18 16 7 C -0.24 -13.35 10.07 84.04 0.85 -12.51 16 8 H 0.05 3.22 8.06 -2.91 -0.02 3.20 16 9 N -0.61 -28.10 2.34 -699.22 -1.63 -29.73 16 10 C 0.12 4.90 4.13 86.47 0.36 5.26 16 11 C -0.13 -4.39 5.02 30.83 0.15 -4.24 16 12 C 0.16 5.30 2.65 44.94 0.12 5.42 16 13 H 0.08 2.79 7.14 -2.39 -0.02 2.77 16 14 C -0.10 -3.21 2.49 -10.87 -0.03 -3.23 16 15 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 16 C -0.11 -2.95 4.82 30.62 0.15 -2.80 16 17 C -0.12 -2.42 6.11 30.72 0.19 -2.23 16 18 C 0.09 1.93 4.77 86.34 0.41 2.34 16 19 N -0.61 -16.71 2.66 -798.74 -2.12 -18.83 16 20 C 0.59 17.77 7.55 86.42 0.65 18.42 16 21 O -0.58 -21.97 16.43 -4.37 -0.07 -22.04 16 22 C -0.31 -7.13 6.15 24.08 0.15 -6.98 16 23 C -0.06 -1.19 10.02 21.72 0.22 -0.97 16 24 C -0.16 -2.30 10.15 21.08 0.21 -2.09 16 25 C -0.24 -2.83 10.92 66.81 0.73 -2.10 16 26 S 0.26 3.83 18.61 -56.49 -1.05 2.78 16 27 C 0.15 5.97 5.91 86.23 0.51 6.48 16 28 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 29 H 0.03 1.25 6.63 -2.39 -0.02 1.23 16 30 H 0.06 2.62 4.42 -2.39 -0.01 2.61 16 31 H 0.08 2.59 5.26 -2.39 -0.01 2.57 16 32 H 0.07 2.09 8.14 -2.39 -0.02 2.08 16 33 H 0.06 2.05 6.03 -2.39 -0.01 2.03 16 34 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 35 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 37 H 0.10 1.62 3.80 -21.68 -0.08 1.54 16 38 H 0.09 1.65 7.26 -2.38 -0.02 1.63 16 39 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 40 H 0.16 1.51 8.06 -2.91 -0.02 1.48 16 41 H 0.20 1.06 8.06 -2.91 -0.02 1.04 16 42 H 0.06 2.49 7.93 -2.39 -0.02 2.47 16 43 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -70.81 332.06 3.01 -67.81 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: 0.79 Total: 11.44 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: 5.13 Total: -0.39 kcal Atomic # 7 Polarization: -104.66 SS G_CDS: -3.46 Total: -108.12 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.07 Total: -22.04 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 1.67 Total: 48.52 kcal Atomic # 16 Polarization: 3.83 SS G_CDS: -1.05 Total: 2.78 kcal Total: -70.81 3.01 -67.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021507994.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.992 kcal (2) G-P(sol) polarization free energy of solvation -70.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds