Wall clock time and date at job start Tue Mar 31 2020 12:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 120.00099 * 2 1 4 4 H 1.48493 * 109.47061 * 269.99308 * 3 2 1 5 5 H 1.48501 * 109.47121 * 29.99693 * 3 2 1 6 6 H 1.48499 * 109.47201 * 149.99216 * 3 2 1 7 7 C 1.38809 * 119.99528 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00501 * 0.02562 * 7 2 1 9 9 N 1.36943 * 119.99720 * 180.02562 * 7 2 1 10 10 C 1.46499 * 120.00178 * 180.02562 * 9 7 2 11 11 H 1.08996 * 110.03710 * 33.84242 * 10 9 7 12 12 C 1.53707 * 109.90229 * 272.68632 * 10 9 7 13 13 C 1.54072 * 106.67703 * 241.81877 * 12 10 9 14 14 C 1.54480 * 104.84125 * 336.66502 * 13 12 10 15 15 H 1.09002 * 114.05669 * 272.30025 * 14 13 12 16 16 C 1.54110 * 108.73154 * 144.68486 * 14 13 12 17 17 N 1.47071 * 107.53060 * 272.44140 * 16 14 13 18 18 C 1.34781 * 125.71071 * 181.98903 * 17 16 14 19 19 O 1.21280 * 120.00126 * 180.02562 * 18 17 16 20 20 C 1.50699 * 119.99711 * 0.02562 * 18 17 16 21 21 C 1.50697 * 109.46889 * 180.02562 * 20 18 17 22 22 C 1.33388 * 125.20688 * 89.71500 * 21 20 18 23 23 C 1.38426 * 114.92195 * 179.85655 * 22 21 20 24 24 C 1.33387 * 114.91880 * 0.43677 * 23 22 21 25 25 S 1.75877 * 109.59570 * 359.76354 * 24 23 22 26 26 C 1.47392 * 108.58103 * 2.00299 * 17 16 14 27 27 C 1.53797 * 109.90272 * 155.00344 * 10 9 7 28 28 H 1.09004 * 113.92940 * 265.04866 * 27 10 9 29 29 H 0.97002 * 119.99609 * 0.02562 * 1 2 3 30 30 H 0.96996 * 119.99880 * 0.02562 * 9 7 2 31 31 H 1.08999 * 110.01567 * 1.12136 * 12 10 9 32 32 H 1.08999 * 110.01766 * 122.46785 * 12 10 9 33 33 H 1.09001 * 110.36282 * 217.82274 * 13 12 10 34 34 H 1.08997 * 110.36606 * 95.51127 * 13 12 10 35 35 H 1.08998 * 109.84263 * 31.92875 * 16 14 13 36 36 H 1.09001 * 109.84295 * 152.94398 * 16 14 13 37 37 H 1.09005 * 109.46935 * 299.99813 * 20 18 17 38 38 H 1.08990 * 109.47715 * 60.00060 * 20 18 17 39 39 H 1.07995 * 122.53998 * 0.02562 * 22 21 20 40 40 H 1.07995 * 122.53999 * 180.19938 * 23 22 21 41 41 H 1.08002 * 125.20406 * 179.79441 * 24 23 22 42 42 H 1.08998 * 110.32828 * 216.17538 * 26 17 16 43 43 H 1.08999 * 110.41358 * 93.99652 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7002 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4709 0.0011 11 1 3.5625 -3.2195 -0.5696 12 6 4.3145 -2.9583 1.4447 13 6 5.8355 -3.0107 1.6845 14 6 6.4539 -3.1442 0.2752 15 1 6.5495 -4.1728 -0.0725 16 6 7.7808 -2.3611 0.2408 17 7 7.4658 -0.9714 -0.1230 18 6 8.3630 0.0197 -0.2945 19 8 7.9869 1.1328 -0.5951 20 6 9.8334 -0.2555 -0.1127 21 6 10.6152 1.0091 -0.3592 22 6 10.9271 1.9139 0.5700 23 6 11.6561 2.9963 0.1086 24 6 11.9284 2.9751 -1.1970 25 16 11.2496 1.5214 -1.9176 26 6 6.0046 -0.8437 -0.2684 27 6 5.5092 -2.2689 -0.6094 28 1 5.5653 -2.5036 -1.6724 29 1 -0.4850 0.8401 -0.0004 30 1 3.8646 -0.3622 0.0014 31 1 3.8506 -2.2610 2.1424 32 1 3.8823 -3.9514 1.5673 33 1 6.0936 -3.8757 2.2955 34 1 6.1760 -2.0923 2.1628 35 1 8.2521 -2.3884 1.2233 36 1 8.4480 -2.7962 -0.5033 37 1 10.0151 -0.6021 0.9047 38 1 10.1498 -1.0222 -0.8197 39 1 10.6354 1.8085 1.6044 40 1 11.9767 3.7992 0.7558 41 1 12.4816 3.7342 -1.7301 42 1 5.7634 -0.1550 -1.0781 43 1 5.5582 -0.5009 0.6651 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026178274.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:31 Heat of formation + Delta-G solvation = 0.552734 kcal Electronic energy + Delta-G solvation = -24770.363728 eV Core-core repulsion = 21327.650363 eV Total energy + Delta-G solvation = -3442.713365 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.74208 -40.00422 -38.49311 -36.75833 -34.98744 -33.27942 -33.13143 -30.68440 -30.06854 -28.20202 -26.95099 -25.11600 -24.61927 -23.76513 -20.91382 -20.81927 -20.37917 -20.10925 -19.60004 -18.31179 -18.03949 -17.29211 -16.78451 -16.48531 -16.38053 -16.12878 -15.83633 -14.89474 -14.57585 -14.48443 -14.24609 -13.99293 -13.90034 -13.80015 -13.64049 -13.58221 -13.39935 -13.28674 -13.21456 -12.70707 -12.48801 -12.32188 -12.17426 -11.84420 -11.70981 -11.68379 -11.59711 -11.53085 -11.32990 -11.02087 -10.96319 -9.69207 -9.60805 -9.38167 -9.31571 -8.07758 -5.38001 0.03002 0.71826 1.07601 1.27822 1.31269 1.34530 1.56308 1.73420 2.07441 2.39452 3.22524 3.26381 3.43049 3.58639 3.71832 3.80532 4.03946 4.17347 4.19916 4.23796 4.28256 4.38043 4.40740 4.46920 4.60750 4.63144 4.67009 4.71791 4.76470 4.77289 4.87623 5.07557 5.12226 5.18040 5.22213 5.26743 5.30561 5.35786 5.53957 5.56700 5.57515 5.77734 6.18640 6.51353 7.04188 7.10025 7.83117 7.97867 9.14252 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.015218 B = 0.003552 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.501335 B = 7882.092913 C = 9193.031913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.056 4.056 3 Si 0.935 3.065 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.268 1.268 7 C -0.220 4.220 8 H 0.067 0.933 9 N -0.756 5.756 10 C 0.175 3.825 11 H 0.056 0.944 12 C -0.142 4.142 13 C -0.107 4.107 14 C -0.082 4.082 15 H 0.142 0.858 16 C 0.100 3.900 17 N -0.614 5.614 18 C 0.517 3.483 19 O -0.587 6.587 20 C -0.054 4.054 21 C -0.174 4.174 22 C -0.140 4.140 23 C -0.145 4.145 24 C -0.216 4.216 25 S 0.084 5.916 26 C 0.112 3.888 27 C -0.103 4.103 28 H 0.103 0.897 29 H 0.257 0.743 30 H 0.362 0.638 31 H 0.038 0.962 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.051 0.949 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.143 0.857 38 H 0.131 0.869 39 H 0.147 0.853 40 H 0.159 0.841 41 H 0.185 0.815 42 H 0.041 0.959 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.348 -6.298 1.296 31.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.248 4.248 3 Si 0.764 3.236 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.194 1.194 7 C -0.351 4.351 8 H 0.085 0.915 9 N -0.401 5.401 10 C 0.067 3.933 11 H 0.074 0.926 12 C -0.182 4.182 13 C -0.145 4.145 14 C -0.101 4.101 15 H 0.160 0.840 16 C -0.021 4.021 17 N -0.348 5.348 18 C 0.307 3.693 19 O -0.467 6.467 20 C -0.095 4.095 21 C -0.292 4.292 22 C -0.171 4.171 23 C -0.175 4.175 24 C -0.351 4.351 25 S 0.347 5.653 26 C -0.011 4.011 27 C -0.123 4.123 28 H 0.121 0.879 29 H 0.066 0.934 30 H 0.196 0.804 31 H 0.057 0.943 32 H 0.088 0.912 33 H 0.114 0.886 34 H 0.070 0.930 35 H 0.115 0.885 36 H 0.121 0.879 37 H 0.161 0.839 38 H 0.149 0.851 39 H 0.165 0.835 40 H 0.176 0.824 41 H 0.202 0.798 42 H 0.060 0.940 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 29.992 -6.318 -0.335 30.653 hybrid contribution -0.721 2.406 1.318 2.837 sum 29.272 -3.912 0.983 29.548 Atomic orbital electron populations 1.69834 1.06605 1.26324 1.60369 1.25263 0.95858 1.00147 1.03525 0.85730 0.78337 0.81645 0.77874 1.21075 1.21770 1.19357 1.19118 0.82717 0.93436 1.39816 0.91517 1.43185 1.02582 1.04147 1.90151 1.20969 0.90570 0.86962 0.94843 0.92596 1.22727 0.97289 1.00686 0.97469 1.22296 0.93464 1.02165 0.96558 1.23140 0.92085 1.00266 0.94596 0.84013 1.22426 0.97971 0.78881 1.02837 1.48680 1.05953 1.11632 1.68513 1.20963 0.88971 0.83124 0.76264 1.90735 1.81768 1.24463 1.49700 1.20200 0.86888 0.94843 1.07560 1.24072 1.06580 1.02173 0.96359 1.20377 1.00966 0.94318 1.01396 1.20430 1.01172 1.00263 0.95678 1.25915 1.08262 1.02533 0.98434 1.84210 1.51667 1.18137 1.11238 1.22022 0.80798 0.98556 0.99742 1.23270 0.94797 0.93379 1.00808 0.87893 0.93385 0.80361 0.94278 0.91236 0.88640 0.92974 0.88460 0.87948 0.83947 0.85093 0.83510 0.82370 0.79823 0.94028 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.06 13.97 21.65 0.30 -63.76 16 2 C -0.06 -3.42 5.50 84.86 0.47 -2.95 16 3 Si 0.93 49.08 27.74 68.60 1.90 50.99 16 4 H -0.28 -14.86 7.11 99.48 0.71 -14.15 16 5 H -0.29 -15.26 7.11 99.48 0.71 -14.55 16 6 H -0.27 -13.44 6.52 99.48 0.65 -12.79 16 7 C -0.22 -12.61 10.44 84.03 0.88 -11.73 16 8 H 0.07 4.10 8.06 -2.91 -0.02 4.08 16 9 N -0.76 -35.65 4.58 -320.54 -1.47 -37.12 16 10 C 0.17 6.16 3.22 45.50 0.15 6.31 16 11 H 0.06 2.04 8.09 -2.39 -0.02 2.02 16 12 C -0.14 -4.29 6.52 31.19 0.20 -4.09 16 13 C -0.11 -2.18 5.58 31.46 0.18 -2.00 16 14 C -0.08 -1.36 4.16 -8.79 -0.04 -1.40 16 15 H 0.14 1.44 8.14 -2.39 -0.02 1.42 16 16 C 0.10 1.38 5.76 86.65 0.50 1.88 16 17 N -0.61 -15.11 3.33 -812.60 -2.70 -17.81 16 18 C 0.52 14.03 7.84 87.66 0.69 14.72 16 19 O -0.59 -22.64 16.28 -3.03 -0.05 -22.69 16 20 C -0.05 -0.89 5.39 29.10 0.16 -0.74 16 21 C -0.17 -3.64 5.00 24.59 0.12 -3.52 16 22 C -0.14 -2.85 10.05 21.22 0.21 -2.64 16 23 C -0.15 -2.69 10.18 21.22 0.22 -2.47 16 24 C -0.22 -3.92 11.23 66.72 0.75 -3.17 16 25 S 0.08 1.72 23.33 -56.49 -1.32 0.40 16 26 C 0.11 3.67 4.39 86.79 0.38 4.05 16 27 C -0.10 -2.77 4.12 -8.82 -0.04 -2.81 16 28 H 0.10 2.61 8.14 -2.38 -0.02 2.59 16 29 H 0.26 16.11 8.31 -92.71 -0.77 15.34 16 30 H 0.36 17.28 3.15 -92.71 -0.29 16.98 16 31 H 0.04 1.46 7.91 -2.39 -0.02 1.44 16 32 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.05 1.20 7.33 -2.39 -0.02 1.18 16 35 H 0.10 0.91 7.84 -2.39 -0.02 0.89 16 36 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.14 1.44 8.14 -2.38 -0.02 1.42 16 38 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.15 2.57 8.06 -2.91 -0.02 2.54 16 40 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 41 H 0.18 2.33 8.06 -2.91 -0.02 2.31 16 42 H 0.04 1.62 7.98 -2.39 -0.02 1.60 16 43 H 0.05 1.94 6.27 -2.39 -0.01 1.93 16 Total: -1.00 -80.87 355.44 2.15 -78.72 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: 0.66 Total: 21.84 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: 4.82 Total: -10.57 kcal Atomic # 7 Polarization: -114.82 SS G_CDS: -3.87 Total: -118.69 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -0.05 Total: -22.69 kcal Atomic # 14 Polarization: 49.08 SS G_CDS: 1.90 Total: 50.99 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -1.32 Total: 0.40 kcal Total: -80.87 2.15 -78.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026178274.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.269 kcal (2) G-P(sol) polarization free energy of solvation -80.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds