Wall clock time and date at job start Tue Mar 31 2020 12:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99839 * 2 1 4 4 H 1.48494 * 109.47145 * 239.99829 * 3 2 1 5 5 H 1.48502 * 109.47049 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46848 * 119.99917 * 3 2 1 7 7 C 1.38807 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00371 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00074 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00148 * 180.02562 * 9 7 2 11 11 H 1.09000 * 110.59301 * 36.28353 * 10 9 7 12 12 C 1.55059 * 110.53189 * 273.54585 * 10 9 7 13 13 C 1.55057 * 102.14033 * 201.34923 * 12 10 9 14 14 C 1.54316 * 103.93566 * 40.03914 * 13 12 10 15 15 H 1.08999 * 111.69220 * 98.07771 * 14 13 12 16 16 C 1.53785 * 109.05785 * 222.03251 * 14 13 12 17 17 N 1.47218 * 106.37485 * 132.43011 * 16 14 13 18 18 C 1.34783 * 126.69963 * 148.72516 * 17 16 14 19 19 O 1.21276 * 119.99697 * 179.97438 * 18 17 16 20 20 C 1.50694 * 119.99973 * 359.97066 * 18 17 16 21 21 C 1.50701 * 109.47328 * 180.02562 * 20 18 17 22 22 C 1.38417 * 122.54210 * 89.99315 * 21 20 18 23 23 C 1.33394 * 114.92322 * 179.97438 * 22 21 20 24 24 S 1.75884 * 109.58993 * 0.02562 * 23 22 21 25 25 C 1.33390 * 122.53510 * 269.71056 * 21 20 18 26 26 C 1.47212 * 106.59810 * 328.71953 * 17 16 14 27 27 C 1.53772 * 106.38060 * 31.28015 * 26 17 16 28 28 H 1.09004 * 111.70813 * 102.76682 * 27 26 17 29 29 H 0.96998 * 119.99941 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99699 * 0.02562 * 9 7 2 31 31 H 1.09002 * 110.90474 * 83.12729 * 12 10 9 32 32 H 1.09003 * 110.90440 * 319.56952 * 12 10 9 33 33 H 1.08998 * 110.53091 * 158.65723 * 13 12 10 34 34 H 1.09007 * 110.53273 * 281.42309 * 13 12 10 35 35 H 1.08998 * 110.07454 * 251.65205 * 16 14 13 36 36 H 1.08996 * 110.07521 * 13.14857 * 16 14 13 37 37 H 1.09002 * 109.46959 * 300.00008 * 20 18 17 38 38 H 1.08995 * 109.47677 * 60.00304 * 20 18 17 39 39 H 1.08003 * 122.53864 * 359.96149 * 22 21 20 40 40 H 1.08001 * 125.20278 * 180.02562 * 23 22 21 41 41 H 1.07995 * 125.20605 * 0.02562 * 25 21 20 42 42 H 1.08998 * 110.07297 * 150.51336 * 26 17 16 43 43 H 1.09007 * 110.07402 * 271.99634 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 2.9616 -3.5773 0.6062 12 6 2.4089 -4.0835 -1.4472 13 6 2.6399 -5.6088 -1.2910 14 6 1.5334 -6.0539 -0.3117 15 1 0.6768 -6.4764 -0.8368 16 6 2.1280 -7.0485 0.6993 17 7 1.6818 -6.6042 2.0300 18 6 1.4343 -7.3866 3.0993 19 8 1.0702 -6.8887 4.1435 20 6 1.6100 -8.8798 2.9973 21 6 1.2710 -9.5171 4.3202 22 6 -0.0084 -9.9396 4.6370 23 6 -0.1371 -10.4829 5.8484 24 16 1.4205 -10.4783 6.6654 25 6 2.1825 -9.7217 5.2724 26 6 1.5589 -5.1387 1.9648 27 6 1.1601 -4.8009 0.5186 28 1 0.0993 -4.5636 0.4379 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3880 -0.0002 31 1 3.3159 -3.5859 -1.7904 32 1 1.5779 -3.8832 -2.1236 33 1 2.5266 -6.1128 -2.2508 34 1 3.6256 -5.8050 -0.8691 35 1 1.7581 -8.0537 0.4970 36 1 3.2164 -7.0324 0.6441 37 1 0.9476 -9.2716 2.2253 38 1 2.6440 -9.1072 2.7385 39 1 -0.8396 -9.8370 3.9551 40 1 -1.0571 -10.8669 6.2640 41 1 3.2279 -9.4605 5.2000 42 1 0.7878 -4.7969 2.6552 43 1 2.5132 -4.6720 2.2094 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026187432.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:34 Heat of formation + Delta-G solvation = 10.880728 kcal Electronic energy + Delta-G solvation = -24243.693713 eV Core-core repulsion = 20801.428204 eV Total energy + Delta-G solvation = -3442.265509 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.43530 -39.00264 -37.56429 -35.17373 -33.37327 -31.62930 -31.00824 -29.62099 -28.47883 -27.91075 -25.11445 -23.95506 -23.08055 -22.69115 -20.33798 -19.41098 -19.19259 -18.66463 -17.73275 -17.32239 -16.92366 -15.99509 -15.77129 -15.16106 -15.03110 -14.26660 -14.22505 -13.83388 -13.38626 -13.23474 -13.08367 -13.00563 -12.89187 -12.60313 -12.36227 -12.31456 -11.97045 -11.77559 -11.66577 -11.15412 -10.96826 -10.88589 -10.77449 -10.70390 -10.39551 -10.30963 -10.24290 -9.97287 -9.78205 -9.65441 -8.95641 -8.87565 -8.60746 -8.54107 -6.95604 -5.77317 -3.06211 0.84867 1.50005 1.80689 2.44320 2.66357 3.16006 3.43854 3.48549 3.49335 4.45354 4.55771 4.60745 4.61840 4.71650 4.84304 4.94873 5.02856 5.18119 5.23479 5.29626 5.41680 5.42834 5.46613 5.56017 5.60274 5.77034 5.83504 5.86301 5.92736 5.97636 6.05157 6.18864 6.19677 6.24731 6.26763 6.33209 6.42753 6.53815 6.64090 6.77891 7.03099 7.61040 7.69262 8.21529 8.41248 9.52326 10.09649 10.43630 11.45182 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.021048 B = 0.002521 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.970299 B =11103.872460 C =11891.259950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.069 0.931 9 N -0.720 5.720 10 C 0.185 3.815 11 H 0.055 0.945 12 C -0.143 4.143 13 C -0.117 4.117 14 C -0.100 4.100 15 H 0.086 0.914 16 C 0.104 3.896 17 N -0.619 5.619 18 C 0.528 3.472 19 O -0.532 6.532 20 C -0.077 4.077 21 C -0.083 4.083 22 C -0.120 4.120 23 C -0.213 4.213 24 S 0.091 5.909 25 C -0.198 4.198 26 C 0.115 3.885 27 C -0.104 4.104 28 H 0.089 0.911 29 H 0.256 0.744 30 H 0.384 0.616 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.139 0.861 40 H 0.163 0.837 41 H 0.162 0.838 42 H 0.077 0.923 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.741 -24.801 4.378 25.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.361 5.361 10 C 0.074 3.926 11 H 0.073 0.927 12 C -0.184 4.184 13 C -0.155 4.155 14 C -0.120 4.120 15 H 0.104 0.896 16 C -0.019 4.019 17 N -0.353 5.353 18 C 0.316 3.684 19 O -0.409 6.409 20 C -0.120 4.120 21 C -0.096 4.096 22 C -0.150 4.150 23 C -0.348 4.348 24 S 0.354 5.646 25 C -0.334 4.334 26 C -0.007 4.007 27 C -0.124 4.124 28 H 0.107 0.893 29 H 0.066 0.934 30 H 0.218 0.782 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.157 0.843 40 H 0.181 0.819 41 H 0.180 0.820 42 H 0.096 0.904 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.138 -24.922 6.518 26.090 hybrid contribution -0.375 1.497 -1.502 2.153 sum 3.763 -23.424 5.016 24.249 Atomic orbital electron populations 1.69645 1.05109 1.25811 1.57495 1.24738 0.95494 0.97693 1.02913 0.86286 0.78548 0.83629 0.77831 1.21287 1.21716 1.21263 1.19173 0.90937 0.84107 1.42918 0.91258 1.42425 1.05700 0.99702 1.88238 1.21232 0.93320 0.85070 0.92999 0.92678 1.23301 1.01397 0.92821 1.00832 1.22506 0.97150 0.97807 0.98048 1.22566 0.98749 0.94998 0.95648 0.89603 1.22342 0.99232 0.98364 0.81968 1.48692 1.66931 1.08395 1.11310 1.20136 0.77402 0.88279 0.82542 1.90738 1.46268 1.75598 1.28260 1.20342 1.04245 0.91765 0.95600 1.18347 0.93150 1.01573 0.96511 1.20023 0.97280 1.00497 0.97222 1.25517 1.01252 1.09236 0.98825 1.84181 1.01491 1.60046 1.18843 1.25397 1.03615 1.07649 0.96737 1.22180 1.02090 0.78799 0.97636 1.22874 1.01464 0.95288 0.92798 0.89287 0.93438 0.78175 0.92174 0.91524 0.92178 0.91699 0.91016 0.91083 0.87968 0.88090 0.84349 0.81898 0.82026 0.90416 0.91106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.97 13.06 55.49 0.72 -27.25 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.24 -6.53 9.98 -15.06 -0.15 -6.68 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.72 -17.45 5.23 -51.69 -0.27 -17.72 16 10 C 0.18 3.43 3.02 -66.13 -0.20 3.24 16 11 H 0.06 1.06 7.16 -51.93 -0.37 0.69 16 12 C -0.14 -2.32 6.60 -24.56 -0.16 -2.48 16 13 C -0.12 -1.38 6.35 -24.95 -0.16 -1.54 16 14 C -0.10 -1.18 3.91 -88.53 -0.35 -1.52 16 15 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 16 C 0.10 1.05 6.38 -3.24 -0.02 1.02 16 17 N -0.62 -8.19 3.32 -171.58 -0.57 -8.76 16 18 C 0.53 7.33 7.87 -10.99 -0.09 7.24 16 19 O -0.53 -9.76 16.27 5.56 0.09 -9.67 16 20 C -0.08 -0.73 4.93 -29.04 -0.14 -0.88 16 21 C -0.08 -0.90 4.29 -106.25 -0.46 -1.35 16 22 C -0.12 -1.24 9.98 -41.21 -0.41 -1.65 16 23 C -0.21 -2.02 11.23 29.04 0.33 -1.69 16 24 S 0.09 0.86 23.34 -107.50 -2.51 -1.65 16 25 C -0.20 -2.05 10.98 29.04 0.32 -1.73 16 26 C 0.11 1.82 6.54 -3.25 -0.02 1.80 16 27 C -0.10 -1.62 3.58 -88.52 -0.32 -1.94 16 28 H 0.09 1.51 7.82 -51.93 -0.41 1.10 16 29 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.38 9.97 7.59 -40.82 -0.31 9.66 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.70 7.19 -51.92 -0.37 0.33 16 35 H 0.07 0.53 7.31 -51.93 -0.38 0.15 16 36 H 0.07 0.65 7.13 -51.93 -0.37 0.28 16 37 H 0.10 0.75 7.85 -51.93 -0.41 0.35 16 38 H 0.10 0.74 8.12 -51.93 -0.42 0.31 16 39 H 0.14 1.24 8.06 -52.48 -0.42 0.82 16 40 H 0.16 1.16 8.06 -52.49 -0.42 0.73 16 41 H 0.16 1.41 8.06 -52.49 -0.42 0.99 16 42 H 0.08 1.39 7.92 -51.93 -0.41 0.98 16 43 H 0.07 1.16 7.13 -51.93 -0.37 0.79 16 LS Contribution 361.31 15.07 5.44 5.44 Total: -1.00 -32.71 361.31 -10.36 -43.07 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -6.33 Total: 7.88 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -1.92 Total: -8.62 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: -0.12 Total: -53.72 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.09 Total: -9.67 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -2.51 Total: -1.65 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.71 -10.36 -43.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026187432.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.951 kcal (2) G-P(sol) polarization free energy of solvation -32.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds