Wall clock time and date at job start Tue Mar 31 2020 12:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99839 * 2 1 4 4 H 1.48494 * 109.47145 * 239.99829 * 3 2 1 5 5 H 1.48502 * 109.47049 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46848 * 119.99917 * 3 2 1 7 7 C 1.38807 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00371 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00074 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00148 * 180.02562 * 9 7 2 11 11 H 1.09000 * 110.59301 * 36.28353 * 10 9 7 12 12 C 1.55059 * 110.53189 * 273.54585 * 10 9 7 13 13 C 1.55057 * 102.14033 * 201.34923 * 12 10 9 14 14 C 1.54316 * 103.93566 * 40.03914 * 13 12 10 15 15 H 1.08999 * 111.69220 * 98.07771 * 14 13 12 16 16 C 1.53785 * 109.05785 * 222.03251 * 14 13 12 17 17 N 1.47218 * 106.37485 * 132.43011 * 16 14 13 18 18 C 1.34783 * 126.69963 * 148.72516 * 17 16 14 19 19 O 1.21276 * 119.99697 * 179.97438 * 18 17 16 20 20 C 1.50694 * 119.99973 * 359.97066 * 18 17 16 21 21 C 1.50701 * 109.47328 * 180.02562 * 20 18 17 22 22 C 1.38417 * 122.54210 * 89.99315 * 21 20 18 23 23 C 1.33394 * 114.92322 * 179.97438 * 22 21 20 24 24 S 1.75884 * 109.58993 * 0.02562 * 23 22 21 25 25 C 1.33390 * 122.53510 * 269.71056 * 21 20 18 26 26 C 1.47212 * 106.59810 * 328.71953 * 17 16 14 27 27 C 1.53772 * 106.38060 * 31.28015 * 26 17 16 28 28 H 1.09004 * 111.70813 * 102.76682 * 27 26 17 29 29 H 0.96998 * 119.99941 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99699 * 0.02562 * 9 7 2 31 31 H 1.09002 * 110.90474 * 83.12729 * 12 10 9 32 32 H 1.09003 * 110.90440 * 319.56952 * 12 10 9 33 33 H 1.08998 * 110.53091 * 158.65723 * 13 12 10 34 34 H 1.09007 * 110.53273 * 281.42309 * 13 12 10 35 35 H 1.08998 * 110.07454 * 251.65205 * 16 14 13 36 36 H 1.08996 * 110.07521 * 13.14857 * 16 14 13 37 37 H 1.09002 * 109.46959 * 300.00008 * 20 18 17 38 38 H 1.08995 * 109.47677 * 60.00304 * 20 18 17 39 39 H 1.08003 * 122.53864 * 359.96149 * 22 21 20 40 40 H 1.08001 * 125.20278 * 180.02562 * 23 22 21 41 41 H 1.07995 * 125.20605 * 0.02562 * 25 21 20 42 42 H 1.08998 * 110.07297 * 150.51336 * 26 17 16 43 43 H 1.09007 * 110.07402 * 271.99634 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 2.9616 -3.5773 0.6062 12 6 2.4089 -4.0835 -1.4472 13 6 2.6399 -5.6088 -1.2910 14 6 1.5334 -6.0539 -0.3117 15 1 0.6768 -6.4764 -0.8368 16 6 2.1280 -7.0485 0.6993 17 7 1.6818 -6.6042 2.0300 18 6 1.4343 -7.3866 3.0993 19 8 1.0702 -6.8887 4.1435 20 6 1.6100 -8.8798 2.9973 21 6 1.2710 -9.5171 4.3202 22 6 -0.0084 -9.9396 4.6370 23 6 -0.1371 -10.4829 5.8484 24 16 1.4205 -10.4783 6.6654 25 6 2.1825 -9.7217 5.2724 26 6 1.5589 -5.1387 1.9648 27 6 1.1601 -4.8009 0.5186 28 1 0.0993 -4.5636 0.4379 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3880 -0.0002 31 1 3.3159 -3.5859 -1.7904 32 1 1.5779 -3.8832 -2.1236 33 1 2.5266 -6.1128 -2.2508 34 1 3.6256 -5.8050 -0.8691 35 1 1.7581 -8.0537 0.4970 36 1 3.2164 -7.0324 0.6441 37 1 0.9476 -9.2716 2.2253 38 1 2.6440 -9.1072 2.7385 39 1 -0.8396 -9.8370 3.9551 40 1 -1.0571 -10.8669 6.2640 41 1 3.2279 -9.4605 5.2000 42 1 0.7878 -4.7969 2.6552 43 1 2.5132 -4.6720 2.2094 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026187432.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:33 Heat of formation + Delta-G solvation = -9.206112 kcal Electronic energy + Delta-G solvation = -24244.564744 eV Core-core repulsion = 20801.428204 eV Total energy + Delta-G solvation = -3443.136540 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.52353 -40.03381 -38.48864 -36.64165 -35.01198 -32.73208 -32.46477 -30.77750 -29.79374 -28.76423 -26.68604 -24.92079 -24.66265 -23.70000 -21.60319 -20.43560 -20.41122 -19.49162 -19.08231 -18.47055 -18.16440 -17.22395 -16.75633 -16.54948 -15.99745 -15.82145 -15.56367 -15.01488 -14.83493 -14.56884 -14.06417 -13.92589 -13.83279 -13.60418 -13.51311 -13.22094 -13.16099 -13.00798 -12.89626 -12.58228 -12.55810 -12.35354 -12.09990 -11.94309 -11.70347 -11.66843 -11.53555 -11.46002 -11.36396 -10.96040 -10.80370 -9.70289 -9.68715 -9.28444 -8.96374 -7.93877 -5.21506 0.11277 0.79031 1.08486 1.45997 1.48880 1.54700 1.63325 1.63808 2.20087 2.56339 3.34908 3.45633 3.55439 3.75250 3.83093 4.02452 4.08836 4.09723 4.24175 4.33941 4.42141 4.50003 4.52598 4.54364 4.61644 4.63665 4.66499 4.74537 4.80029 4.88784 4.98516 5.09573 5.11007 5.13123 5.22733 5.31748 5.42345 5.47893 5.48810 5.53761 5.55144 5.64697 6.28815 6.60797 7.17302 7.34259 8.12420 8.33638 9.29647 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.021048 B = 0.002521 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.970299 B =11103.872460 C =11891.259950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.078 4.078 3 Si 0.970 3.030 4 H -0.276 1.276 5 H -0.298 1.298 6 H -0.281 1.281 7 C -0.236 4.236 8 H 0.075 0.925 9 N -0.736 5.736 10 C 0.174 3.826 11 H 0.048 0.952 12 C -0.139 4.139 13 C -0.101 4.101 14 C -0.091 4.091 15 H 0.104 0.896 16 C 0.104 3.896 17 N -0.617 5.617 18 C 0.523 3.477 19 O -0.589 6.589 20 C -0.066 4.066 21 C -0.099 4.099 22 C -0.138 4.138 23 C -0.218 4.218 24 S 0.091 5.909 25 C -0.213 4.213 26 C 0.120 3.880 27 C -0.099 4.099 28 H 0.068 0.932 29 H 0.250 0.750 30 H 0.371 0.629 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.114 0.886 36 H 0.091 0.909 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.149 0.851 40 H 0.183 0.817 41 H 0.174 0.826 42 H 0.043 0.957 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.356 -27.655 3.138 28.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.799 3.201 4 H -0.202 1.202 5 H -0.224 1.224 6 H -0.207 1.207 7 C -0.368 4.368 8 H 0.093 0.907 9 N -0.375 5.375 10 C 0.066 3.934 11 H 0.066 0.934 12 C -0.180 4.180 13 C -0.139 4.139 14 C -0.111 4.111 15 H 0.122 0.878 16 C -0.017 4.017 17 N -0.350 5.350 18 C 0.314 3.686 19 O -0.469 6.469 20 C -0.107 4.107 21 C -0.112 4.112 22 C -0.168 4.168 23 C -0.353 4.353 24 S 0.355 5.645 25 C -0.348 4.348 26 C -0.004 4.004 27 C -0.119 4.119 28 H 0.087 0.913 29 H 0.058 0.942 30 H 0.203 0.797 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.132 0.868 36 H 0.109 0.891 37 H 0.150 0.850 38 H 0.150 0.850 39 H 0.166 0.834 40 H 0.200 0.800 41 H 0.191 0.809 42 H 0.061 0.939 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.812 -27.842 5.241 28.921 hybrid contribution -0.865 2.350 -1.063 2.720 sum 4.947 -25.492 4.178 26.301 Atomic orbital electron populations 1.69808 1.06602 1.25969 1.59842 1.25531 0.96328 1.01034 1.04120 0.85265 0.77219 0.79475 0.78158 1.20176 1.22390 1.20694 1.19566 0.91347 0.85309 1.40558 0.90723 1.42646 1.05292 1.01085 1.88464 1.21515 0.93126 0.83894 0.94900 0.93433 1.23124 1.00240 0.96639 0.97955 1.22458 0.97992 0.93815 0.99631 1.22585 0.99592 0.93251 0.95640 0.87795 1.22598 1.00434 0.99600 0.79100 1.48755 1.66571 1.06867 1.12777 1.21022 0.75966 0.90043 0.81584 1.90715 1.48788 1.76892 1.30473 1.20402 1.06804 0.87679 0.95862 1.18610 0.93361 1.01844 0.97374 1.20285 0.97710 1.00948 0.97887 1.25853 1.01955 1.08824 0.98701 1.84148 1.01698 1.59844 1.18819 1.25685 1.04427 1.07773 0.96918 1.21896 1.00273 0.81234 0.96994 1.22687 0.99558 0.96258 0.93444 0.91332 0.94166 0.79732 0.92966 0.93243 0.89334 0.89842 0.86807 0.89098 0.85016 0.85050 0.83354 0.79995 0.80886 0.93855 0.92197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.31 13.06 21.65 0.28 -60.03 16 2 C -0.08 -4.53 5.50 84.86 0.47 -4.07 16 3 Si 0.97 46.69 29.55 68.60 2.03 48.72 16 4 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 5 H -0.30 -14.51 7.11 99.48 0.71 -13.81 16 6 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 7 C -0.24 -13.10 9.98 84.03 0.84 -12.26 16 8 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 9 N -0.74 -36.88 5.23 -317.44 -1.66 -38.54 16 10 C 0.17 6.54 3.02 46.16 0.14 6.68 16 11 H 0.05 1.85 7.16 -2.39 -0.02 1.83 16 12 C -0.14 -4.35 6.60 32.00 0.21 -4.14 16 13 C -0.10 -1.98 6.35 31.75 0.20 -1.78 16 14 C -0.09 -1.83 3.91 -9.44 -0.04 -1.87 16 15 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 16 C 0.10 1.60 6.38 86.51 0.55 2.15 16 17 N -0.62 -15.07 3.32 -815.15 -2.71 -17.78 16 18 C 0.52 13.65 7.87 87.65 0.69 14.34 16 19 O -0.59 -21.83 16.27 -3.02 -0.05 -21.88 16 20 C -0.07 -1.02 4.93 29.10 0.14 -0.88 16 21 C -0.10 -1.94 4.29 -20.92 -0.09 -2.03 16 22 C -0.14 -2.65 9.98 21.22 0.21 -2.44 16 23 C -0.22 -3.86 11.23 66.72 0.75 -3.11 16 24 S 0.09 1.64 23.34 -56.49 -1.32 0.32 16 25 C -0.21 -4.07 10.98 66.72 0.73 -3.34 16 26 C 0.12 3.84 6.54 86.50 0.57 4.41 16 27 C -0.10 -3.07 3.58 -9.43 -0.03 -3.11 16 28 H 0.07 2.41 7.82 -2.38 -0.02 2.39 16 29 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 30 H 0.37 20.23 7.59 -92.71 -0.70 19.52 16 31 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.08 1.39 7.19 -2.38 -0.02 1.37 16 35 H 0.11 0.91 7.31 -2.39 -0.02 0.89 16 36 H 0.09 1.13 7.13 -2.39 -0.02 1.11 16 37 H 0.13 1.28 7.85 -2.39 -0.02 1.26 16 38 H 0.13 1.26 8.12 -2.39 -0.02 1.24 16 39 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 40 H 0.18 2.31 8.06 -2.91 -0.02 2.28 16 41 H 0.17 2.73 8.06 -2.91 -0.02 2.70 16 42 H 0.04 1.66 7.92 -2.39 -0.02 1.64 16 43 H 0.06 2.03 7.13 -2.38 -0.02 2.01 16 Total: -1.00 -75.60 361.31 2.23 -73.37 By element: Atomic # 1 Polarization: 26.94 SS G_CDS: 0.31 Total: 27.25 kcal Atomic # 6 Polarization: -16.78 SS G_CDS: 5.34 Total: -11.43 kcal Atomic # 7 Polarization: -112.26 SS G_CDS: -4.08 Total: -116.34 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.05 Total: -21.88 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -1.32 Total: 0.32 kcal Total: -75.60 2.23 -73.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026187432.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.163 kcal (2) G-P(sol) polarization free energy of solvation -75.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds