Wall clock time and date at job start Tue Mar 31 2020 12:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86804 * 120.00047 * 2 1 4 4 H 1.48500 * 109.46989 * 270.00075 * 3 2 1 5 5 H 1.48497 * 109.47164 * 29.99812 * 3 2 1 6 6 H 1.48499 * 109.47503 * 149.99991 * 3 2 1 7 7 C 1.38816 * 120.00332 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00221 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99592 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.65190 * 359.96589 * 9 7 2 11 11 C 1.54908 * 104.83147 * 155.91036 * 10 9 7 12 12 C 1.55158 * 101.58358 * 37.01334 * 11 10 9 13 13 H 1.08999 * 110.71415 * 83.03716 * 12 11 10 14 14 C 1.52999 * 110.71859 * 206.13633 * 12 11 10 15 15 N 1.46506 * 109.46684 * 182.56100 * 14 12 11 16 16 C 1.34777 * 119.99873 * 180.02562 * 15 14 12 17 17 O 1.21704 * 120.00041 * 359.97438 * 16 15 14 18 18 C 1.46576 * 119.99910 * 179.97438 * 16 15 14 19 19 S 1.75828 * 125.45981 * 0.02562 * 18 16 15 20 20 C 1.70621 * 91.56644 * 180.02562 * 19 18 16 21 21 C 1.33821 * 110.95146 * 359.97438 * 20 19 18 22 22 C 1.36652 * 125.45883 * 179.72062 * 18 16 15 23 23 C 1.50706 * 123.35003 * 359.97438 * 22 18 16 24 24 C 1.52995 * 117.49969 * 188.62611 * 23 22 18 25 25 C 1.52995 * 117.50037 * 120.00279 * 23 22 18 26 26 C 1.47326 * 125.61451 * 180.20080 * 9 7 2 27 27 H 0.96998 * 120.00271 * 359.97438 * 1 2 3 28 28 H 1.09000 * 110.36112 * 37.07302 * 10 9 7 29 29 H 1.09000 * 110.46327 * 274.79831 * 10 9 7 30 30 H 1.09004 * 111.00177 * 278.94246 * 11 10 9 31 31 H 1.08997 * 111.03524 * 155.10549 * 11 10 9 32 32 H 1.09000 * 109.47486 * 62.56034 * 14 12 11 33 33 H 1.09001 * 109.47362 * 302.55311 * 14 12 11 34 34 H 0.96995 * 120.00050 * 359.72237 * 15 14 12 35 35 H 1.07993 * 124.52512 * 180.02562 * 20 19 18 36 36 H 1.07999 * 122.44454 * 180.02562 * 21 20 19 37 37 H 1.09005 * 115.54876 * 334.33404 * 23 22 18 38 38 H 1.09006 * 117.49610 * 359.97438 * 24 23 22 39 39 H 1.09005 * 117.50045 * 145.01815 * 24 23 22 40 40 H 1.08993 * 117.49887 * 214.98172 * 25 23 22 41 41 H 1.09009 * 117.49658 * 359.97438 * 25 23 22 42 42 H 1.08997 * 110.06406 * 61.67267 * 26 9 7 43 43 H 1.08995 * 109.84141 * 300.41367 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1415 -2.5332 0.0007 11 6 -0.4016 -3.9326 -0.6106 12 6 0.7785 -4.7525 -0.0252 13 1 0.5446 -5.1002 0.9810 14 6 1.1232 -5.9317 -0.9370 15 7 2.1977 -6.7208 -0.3295 16 6 2.6686 -7.8154 -0.9592 17 8 2.2009 -8.1486 -2.0323 18 6 3.7440 -8.6047 -0.3517 19 16 4.5208 -8.2563 1.1868 20 6 5.5415 -9.6148 1.0323 21 6 5.2956 -10.2709 -0.1078 22 6 4.2996 -9.7324 -0.8874 23 6 3.8666 -10.3242 -2.2040 24 6 4.4321 -11.6944 -2.5827 25 6 4.9199 -10.4385 -3.3077 26 6 1.9338 -3.7298 0.0053 27 1 -0.4850 0.8400 0.0004 28 1 -0.5993 -1.7591 -0.6152 29 1 -0.5290 -2.4858 1.0184 30 1 -0.3519 -3.8988 -1.6989 31 1 -1.3590 -4.3333 -0.2775 32 1 1.4510 -5.5574 -1.9069 33 1 0.2416 -6.5591 -1.0687 34 1 2.5732 -6.4530 0.5238 35 1 6.2861 -9.9066 1.7580 36 1 5.8368 -11.1611 -0.3923 37 1 2.8433 -10.1007 -2.5061 38 1 5.1178 -12.1676 -1.8798 39 1 3.7809 -12.3728 -3.1340 40 1 4.5897 -10.2906 -4.3358 41 1 5.9261 -10.0852 -3.0816 42 1 2.5276 -3.8681 0.9088 43 1 2.5623 -3.8542 -0.8765 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028971083.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:28 Heat of formation + Delta-G solvation = 45.406417 kcal Electronic energy + Delta-G solvation = -23935.279319 eV Core-core repulsion = 20494.510956 eV Total energy + Delta-G solvation = -3440.768363 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.09272 -38.77704 -37.53054 -35.85408 -34.65526 -32.55231 -30.54812 -29.59138 -28.23000 -26.00666 -25.03015 -23.47455 -22.65132 -22.29543 -21.33821 -20.20212 -19.84089 -18.73506 -17.98575 -16.85420 -16.73886 -15.78753 -15.73928 -15.27556 -14.82374 -14.73490 -14.50979 -14.00480 -13.71502 -13.51057 -13.39708 -12.72420 -12.61973 -12.51329 -12.09107 -11.78713 -11.71433 -11.68852 -11.50079 -11.23992 -10.95815 -10.86463 -10.80128 -10.56325 -10.40989 -10.13693 -10.02502 -9.91251 -9.74273 -9.51374 -9.17317 -8.86842 -8.65321 -8.59472 -6.83957 -5.65693 -3.07291 0.28849 1.24808 1.63756 2.09890 3.10898 3.17347 3.39934 3.44792 3.46719 3.80241 4.43602 4.48259 4.58884 4.74239 4.77488 4.87803 5.05726 5.13644 5.23547 5.24890 5.39277 5.41114 5.52146 5.59614 5.68531 5.74427 5.81589 5.87449 5.90287 6.02872 6.04787 6.09783 6.29471 6.33977 6.42282 6.54496 6.58089 6.71263 6.89767 7.47373 7.51030 7.62166 7.85287 8.16550 8.36065 9.21907 9.82586 10.47544 11.38370 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.020271 B = 0.002639 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.971500 B =10609.360693 C =11070.833156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.012 4.012 3 Si 0.914 3.086 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.222 4.222 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.152 3.848 11 C -0.134 4.134 12 C -0.116 4.116 13 H 0.076 0.924 14 C 0.134 3.866 15 N -0.721 5.721 16 C 0.589 3.411 17 O -0.529 6.529 18 C -0.264 4.264 19 S 0.205 5.795 20 C -0.229 4.229 21 C -0.148 4.148 22 C 0.007 3.993 23 C -0.102 4.102 24 C -0.178 4.178 25 C -0.163 4.163 26 C 0.140 3.860 27 H 0.252 0.748 28 H 0.107 0.893 29 H 0.012 0.988 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.398 0.602 35 H 0.169 0.831 36 H 0.144 0.856 37 H 0.137 0.863 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.018 0.982 43 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.565 -22.853 0.805 24.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.207 4.207 3 Si 0.745 3.255 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.351 4.351 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.027 3.973 11 C -0.174 4.174 12 C -0.135 4.135 13 H 0.094 0.906 14 C 0.011 3.989 15 N -0.371 5.371 16 C 0.375 3.625 17 O -0.408 6.408 18 C -0.384 4.384 19 S 0.474 5.526 20 C -0.367 4.367 21 C -0.180 4.180 22 C -0.008 4.008 23 C -0.122 4.122 24 C -0.215 4.215 25 C -0.200 4.200 26 C 0.014 3.986 27 H 0.063 0.937 28 H 0.125 0.875 29 H 0.030 0.970 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.232 0.768 35 H 0.187 0.813 36 H 0.161 0.839 37 H 0.154 0.846 38 H 0.113 0.887 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.112 0.888 42 H 0.036 0.964 43 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 8.012 -21.671 1.204 23.136 hybrid contribution 1.063 -0.217 -0.368 1.146 sum 9.076 -21.888 0.835 23.710 Atomic orbital electron populations 1.69789 1.04893 1.24777 1.57676 1.24787 0.95734 0.97723 1.02473 0.86073 0.78506 0.83326 0.77597 1.21576 1.21649 1.20754 1.19080 0.90502 0.82490 1.43002 0.90539 1.44576 1.01955 0.99670 1.86856 1.21928 0.84637 0.92500 0.98209 1.23004 0.95449 0.98564 1.00350 1.22462 0.98419 0.93998 0.98646 0.90555 1.21508 0.88915 0.91547 0.96942 1.45979 1.39204 1.27276 1.24689 1.16883 0.81046 0.80111 0.84428 1.90764 1.59510 1.69499 1.20993 1.24441 1.07601 1.04138 1.02248 1.83171 1.28198 1.24682 1.16539 1.25237 1.06536 1.01811 1.03137 1.19844 1.00278 1.02960 0.94893 1.18682 0.93984 0.92562 0.95570 1.20994 1.00720 0.98749 0.91717 1.23053 1.03966 0.90720 1.03799 1.22947 0.98709 1.01290 0.97071 1.21393 0.93456 0.85991 0.97752 0.93720 0.87507 0.97011 0.91782 0.92070 0.90935 0.91339 0.76789 0.81341 0.83890 0.84552 0.88742 0.88361 0.88245 0.88812 0.96365 0.95685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.90 10.09 55.49 0.56 -26.34 16 2 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 3 Si 0.91 22.10 29.55 -169.99 -5.02 17.07 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.22 -6.21 10.28 -15.06 -0.15 -6.37 16 8 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 9 N -0.60 -15.44 3.40 -169.83 -0.58 -16.02 16 10 C 0.15 3.66 5.89 -2.53 -0.01 3.64 16 11 C -0.13 -2.48 6.54 -24.58 -0.16 -2.64 16 12 C -0.12 -1.93 2.98 -88.79 -0.26 -2.20 16 13 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 14 C 0.13 2.00 5.00 -4.04 -0.02 1.98 16 15 N -0.72 -9.91 5.43 -61.65 -0.33 -10.24 16 16 C 0.59 8.64 7.78 -12.90 -0.10 8.54 16 17 O -0.53 -9.09 14.30 5.19 0.07 -9.02 16 18 C -0.26 -3.27 6.45 -36.79 -0.24 -3.51 16 19 S 0.21 1.93 22.16 -107.50 -2.38 -0.45 16 20 C -0.23 -1.87 10.92 29.18 0.32 -1.55 16 21 C -0.15 -1.35 9.46 -41.41 -0.39 -1.74 16 22 C 0.01 0.08 5.60 -105.47 -0.59 -0.51 16 23 C -0.10 -1.14 5.43 -91.77 -0.50 -1.64 16 24 C -0.18 -1.47 9.95 -26.74 -0.27 -1.74 16 25 C -0.16 -1.53 10.21 -26.74 -0.27 -1.80 16 26 C 0.14 2.86 6.66 -2.90 -0.02 2.84 16 27 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.11 2.90 5.87 -51.93 -0.31 2.60 16 29 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 1.18 8.05 -51.93 -0.42 0.76 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.07 1.19 8.00 -51.93 -0.42 0.77 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.40 4.85 7.51 -40.82 -0.31 4.55 16 35 H 0.17 0.92 8.06 -52.49 -0.42 0.49 16 36 H 0.14 1.00 6.61 -52.49 -0.35 0.65 16 37 H 0.14 1.82 6.18 -51.93 -0.32 1.50 16 38 H 0.09 0.65 6.56 -51.93 -0.34 0.31 16 39 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.09 0.84 8.14 -51.92 -0.42 0.41 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.03 0.52 7.73 -51.93 -0.40 0.12 16 LS Contribution 360.73 15.07 5.44 5.44 Total: -1.00 -31.82 360.73 -11.22 -43.04 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -6.21 Total: 3.63 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -2.77 Total: -7.12 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: -0.35 Total: -52.60 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.07 Total: -9.02 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Atomic # 16 Polarization: 1.93 SS G_CDS: -2.38 Total: -0.45 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.82 -11.22 -43.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028971083.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.449 kcal (2) G-P(sol) polarization free energy of solvation -31.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds