Wall clock time and date at job start Tue Mar 31 2020 12:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86804 * 120.00047 * 2 1 4 4 H 1.48500 * 109.46989 * 270.00075 * 3 2 1 5 5 H 1.48497 * 109.47164 * 29.99812 * 3 2 1 6 6 H 1.48499 * 109.47503 * 149.99991 * 3 2 1 7 7 C 1.38816 * 120.00332 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00221 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99592 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.65190 * 359.96589 * 9 7 2 11 11 C 1.54908 * 104.83147 * 155.91036 * 10 9 7 12 12 C 1.55158 * 101.58358 * 37.01334 * 11 10 9 13 13 H 1.08999 * 110.71415 * 83.03716 * 12 11 10 14 14 C 1.52999 * 110.71859 * 206.13633 * 12 11 10 15 15 N 1.46506 * 109.46684 * 182.56100 * 14 12 11 16 16 C 1.34777 * 119.99873 * 180.02562 * 15 14 12 17 17 O 1.21704 * 120.00041 * 359.97438 * 16 15 14 18 18 C 1.46576 * 119.99910 * 179.97438 * 16 15 14 19 19 S 1.75828 * 125.45981 * 0.02562 * 18 16 15 20 20 C 1.70621 * 91.56644 * 180.02562 * 19 18 16 21 21 C 1.33821 * 110.95146 * 359.97438 * 20 19 18 22 22 C 1.36652 * 125.45883 * 179.72062 * 18 16 15 23 23 C 1.50706 * 123.35003 * 359.97438 * 22 18 16 24 24 C 1.52995 * 117.49969 * 188.62611 * 23 22 18 25 25 C 1.52995 * 117.50037 * 120.00279 * 23 22 18 26 26 C 1.47326 * 125.61451 * 180.20080 * 9 7 2 27 27 H 0.96998 * 120.00271 * 359.97438 * 1 2 3 28 28 H 1.09000 * 110.36112 * 37.07302 * 10 9 7 29 29 H 1.09000 * 110.46327 * 274.79831 * 10 9 7 30 30 H 1.09004 * 111.00177 * 278.94246 * 11 10 9 31 31 H 1.08997 * 111.03524 * 155.10549 * 11 10 9 32 32 H 1.09000 * 109.47486 * 62.56034 * 14 12 11 33 33 H 1.09001 * 109.47362 * 302.55311 * 14 12 11 34 34 H 0.96995 * 120.00050 * 359.72237 * 15 14 12 35 35 H 1.07993 * 124.52512 * 180.02562 * 20 19 18 36 36 H 1.07999 * 122.44454 * 180.02562 * 21 20 19 37 37 H 1.09005 * 115.54876 * 334.33404 * 23 22 18 38 38 H 1.09006 * 117.49610 * 359.97438 * 24 23 22 39 39 H 1.09005 * 117.50045 * 145.01815 * 24 23 22 40 40 H 1.08993 * 117.49887 * 214.98172 * 25 23 22 41 41 H 1.09009 * 117.49658 * 359.97438 * 25 23 22 42 42 H 1.08997 * 110.06406 * 61.67267 * 26 9 7 43 43 H 1.08995 * 109.84141 * 300.41367 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1415 -2.5332 0.0007 11 6 -0.4016 -3.9326 -0.6106 12 6 0.7785 -4.7525 -0.0252 13 1 0.5446 -5.1002 0.9810 14 6 1.1232 -5.9317 -0.9370 15 7 2.1977 -6.7208 -0.3295 16 6 2.6686 -7.8154 -0.9592 17 8 2.2009 -8.1486 -2.0323 18 6 3.7440 -8.6047 -0.3517 19 16 4.5208 -8.2563 1.1868 20 6 5.5415 -9.6148 1.0323 21 6 5.2956 -10.2709 -0.1078 22 6 4.2996 -9.7324 -0.8874 23 6 3.8666 -10.3242 -2.2040 24 6 4.4321 -11.6944 -2.5827 25 6 4.9199 -10.4385 -3.3077 26 6 1.9338 -3.7298 0.0053 27 1 -0.4850 0.8400 0.0004 28 1 -0.5993 -1.7591 -0.6152 29 1 -0.5290 -2.4858 1.0184 30 1 -0.3519 -3.8988 -1.6989 31 1 -1.3590 -4.3333 -0.2775 32 1 1.4510 -5.5574 -1.9069 33 1 0.2416 -6.5591 -1.0687 34 1 2.5732 -6.4530 0.5238 35 1 6.2861 -9.9066 1.7580 36 1 5.8368 -11.1611 -0.3923 37 1 2.8433 -10.1007 -2.5061 38 1 5.1178 -12.1676 -1.8798 39 1 3.7809 -12.3728 -3.1340 40 1 4.5897 -10.2906 -4.3358 41 1 5.9261 -10.0852 -3.0816 42 1 2.5276 -3.8681 0.9088 43 1 2.5623 -3.8542 -0.8765 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028971083.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:27 Heat of formation + Delta-G solvation = 26.787933 kcal Electronic energy + Delta-G solvation = -23936.086677 eV Core-core repulsion = 20494.510956 eV Total energy + Delta-G solvation = -3441.575721 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.10125 -39.79556 -39.02635 -36.57221 -36.07565 -34.34875 -31.91180 -30.96886 -29.75067 -27.48655 -26.34396 -24.90920 -23.35823 -23.02299 -22.51359 -21.84107 -21.31762 -19.82380 -18.92463 -18.68571 -17.61537 -17.09260 -16.82673 -16.63539 -16.28911 -15.90494 -15.58841 -15.48296 -14.65289 -14.60004 -14.50281 -14.29277 -13.91216 -13.56210 -13.42772 -13.29855 -13.14861 -12.84411 -12.82417 -12.66842 -12.38184 -12.02757 -12.01287 -11.86743 -11.83170 -11.60519 -11.58524 -11.39251 -11.29179 -10.87658 -10.74206 -10.26580 -9.72319 -9.31887 -8.88879 -7.77794 -5.21972 -0.50705 0.49576 0.92739 1.34991 1.46195 1.48154 1.56684 2.06857 2.11049 2.49256 3.06743 3.31670 3.58565 3.67645 3.76327 3.87262 3.93989 3.94979 4.05591 4.09252 4.19545 4.36780 4.42665 4.56945 4.63420 4.68075 4.75370 4.77404 4.88831 4.89706 5.02093 5.04877 5.09718 5.11628 5.24039 5.28676 5.32920 5.38254 5.47088 5.51032 5.65635 5.82288 6.31489 6.40599 7.08573 7.11014 7.78272 8.41965 9.24218 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.020271 B = 0.002639 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.971500 B =10609.360693 C =11070.833156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.068 4.068 3 Si 0.980 3.020 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.270 1.270 7 C -0.239 4.239 8 H 0.079 0.921 9 N -0.628 5.628 10 C 0.152 3.848 11 C -0.121 4.121 12 C -0.096 4.096 13 H 0.096 0.904 14 C 0.146 3.854 15 N -0.717 5.717 16 C 0.586 3.414 17 O -0.564 6.564 18 C -0.307 4.307 19 S 0.223 5.777 20 C -0.210 4.210 21 C -0.160 4.160 22 C 0.008 3.992 23 C -0.131 4.131 24 C -0.154 4.154 25 C -0.164 4.164 26 C 0.137 3.863 27 H 0.247 0.753 28 H 0.071 0.929 29 H -0.009 1.009 30 H 0.063 0.937 31 H 0.091 0.909 32 H 0.055 0.945 33 H 0.079 0.921 34 H 0.406 0.594 35 H 0.203 0.797 36 H 0.168 0.832 37 H 0.107 0.893 38 H 0.115 0.885 39 H 0.107 0.893 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.029 0.971 43 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.561 -24.965 1.854 27.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.260 4.260 3 Si 0.808 3.192 4 H -0.214 1.214 5 H -0.219 1.219 6 H -0.195 1.195 7 C -0.368 4.368 8 H 0.097 0.903 9 N -0.354 5.354 10 C 0.027 3.973 11 C -0.160 4.160 12 C -0.115 4.115 13 H 0.115 0.885 14 C 0.022 3.978 15 N -0.368 5.368 16 C 0.375 3.625 17 O -0.446 6.446 18 C -0.427 4.427 19 S 0.492 5.508 20 C -0.348 4.348 21 C -0.190 4.190 22 C -0.008 4.008 23 C -0.151 4.151 24 C -0.191 4.191 25 C -0.202 4.202 26 C 0.012 3.988 27 H 0.057 0.943 28 H 0.089 0.911 29 H 0.009 0.991 30 H 0.081 0.919 31 H 0.109 0.891 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.242 0.758 35 H 0.220 0.780 36 H 0.185 0.815 37 H 0.125 0.875 38 H 0.133 0.867 39 H 0.125 0.875 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.047 0.953 43 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 10.029 -23.805 2.272 25.931 hybrid contribution 0.497 0.383 -0.681 0.926 sum 10.526 -23.422 1.591 25.728 Atomic orbital electron populations 1.70046 1.06185 1.25033 1.58623 1.25633 0.96663 1.00975 1.02763 0.85057 0.77624 0.79062 0.77464 1.21350 1.21913 1.19457 1.19449 0.90987 0.83876 1.42523 0.90301 1.44897 1.02823 1.00889 1.86829 1.21728 0.83992 0.94840 0.96699 1.22846 0.97674 0.95448 1.00052 1.22304 0.95932 0.93290 0.99966 0.88543 1.21256 0.89756 0.91092 0.95673 1.45871 1.38929 1.27040 1.24940 1.17242 0.81249 0.80031 0.84019 1.90741 1.60868 1.70429 1.22546 1.24322 1.08663 1.05183 1.04529 1.83069 1.27965 1.25283 1.14496 1.25690 1.05771 1.00234 1.03075 1.20023 1.00094 1.04008 0.94891 1.18964 0.94099 0.92110 0.95586 1.20917 0.99833 1.01686 0.92683 1.23167 1.03239 0.89614 1.03038 1.23007 0.98348 1.02242 0.96554 1.21552 0.94731 0.84767 0.97763 0.94311 0.91061 0.99061 0.91866 0.89069 0.92615 0.90234 0.75832 0.78017 0.81481 0.87541 0.86669 0.87475 0.88429 0.88176 0.95339 0.96209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.95 10.09 21.65 0.22 -56.73 16 2 C -0.07 -3.89 5.49 84.86 0.47 -3.42 16 3 Si 0.98 45.97 29.55 68.60 2.03 48.00 16 4 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.24 -13.57 10.28 84.04 0.86 -12.70 16 8 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 9 N -0.63 -32.55 3.40 -691.23 -2.35 -34.91 16 10 C 0.15 7.49 5.89 86.85 0.51 8.01 16 11 C -0.12 -4.39 6.54 31.99 0.21 -4.18 16 12 C -0.10 -3.08 2.98 -9.61 -0.03 -3.11 16 13 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 14 C 0.15 4.25 5.00 86.38 0.43 4.68 16 15 N -0.72 -19.28 5.43 -467.16 -2.54 -21.81 16 16 C 0.59 17.31 7.78 86.42 0.67 17.99 16 17 O -0.56 -20.06 14.30 -4.36 -0.06 -20.12 16 18 C -0.31 -7.41 6.45 24.08 0.16 -7.25 16 19 S 0.22 3.72 22.16 -56.49 -1.25 2.47 16 20 C -0.21 -2.68 10.92 66.82 0.73 -1.95 16 21 C -0.16 -2.42 9.46 21.08 0.20 -2.22 16 22 C 0.01 0.18 5.60 -20.41 -0.11 0.07 16 23 C -0.13 -2.90 5.43 -11.54 -0.06 -2.96 16 24 C -0.15 -2.23 9.95 30.59 0.30 -1.92 16 25 C -0.16 -2.92 10.21 30.59 0.31 -2.60 16 26 C 0.14 5.53 6.66 86.67 0.58 6.11 16 27 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 28 H 0.07 4.03 5.87 -2.39 -0.01 4.02 16 29 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 30 H 0.06 2.30 8.05 -2.39 -0.02 2.28 16 31 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 32 H 0.06 1.83 8.00 -2.39 -0.02 1.81 16 33 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.41 9.45 7.51 -92.71 -0.70 8.75 16 35 H 0.20 1.18 8.06 -2.91 -0.02 1.16 16 36 H 0.17 1.65 6.61 -2.91 -0.02 1.63 16 37 H 0.11 3.00 6.18 -2.38 -0.01 2.99 16 38 H 0.12 1.18 6.56 -2.38 -0.02 1.17 16 39 H 0.11 1.35 8.14 -2.38 -0.02 1.33 16 40 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 42 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.02 0.83 7.73 -2.39 -0.02 0.81 16 Total: -1.00 -71.59 360.73 1.60 -69.99 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: 0.33 Total: 18.57 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: 5.23 Total: -5.46 kcal Atomic # 7 Polarization: -108.78 SS G_CDS: -4.67 Total: -113.45 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.06 Total: -20.12 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Atomic # 16 Polarization: 3.72 SS G_CDS: -1.25 Total: 2.47 kcal Total: -71.59 1.60 -69.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028971083.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.776 kcal (2) G-P(sol) polarization free energy of solvation -71.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds