Wall clock time and date at job start Tue Mar 31 2020 12:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86807 * 119.99539 * 2 1 4 4 H 1.48501 * 109.46994 * 240.00011 * 3 2 1 5 5 H 1.48494 * 109.47009 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47124 * 120.00409 * 3 2 1 7 7 C 1.38809 * 120.00635 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00512 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99890 * 359.97438 * 7 2 1 10 10 C 1.47083 * 125.62823 * 0.02953 * 9 7 2 11 11 C 1.54460 * 107.30218 * 178.98616 * 10 9 7 12 12 C 1.54396 * 102.86732 * 338.50037 * 11 10 9 13 13 C 1.47572 * 125.62928 * 179.97438 * 9 7 2 14 14 C 1.52107 * 110.50541 * 152.62666 * 12 11 10 15 15 C 1.53345 * 109.44116 * 64.09333 * 14 12 11 16 16 N 1.46927 * 108.68992 * 53.29974 * 15 14 12 17 17 C 1.34773 * 120.55002 * 125.63836 * 16 15 14 18 18 O 1.21632 * 120.00004 * 3.47897 * 17 16 15 19 19 C 1.47195 * 119.99949 * 183.48486 * 17 16 15 20 20 C 1.44431 * 123.45996 * 313.65733 * 19 17 16 21 21 C 1.32768 * 113.08151 * 179.97438 * 20 19 17 22 22 S 1.75504 * 110.57809 * 359.97438 * 21 20 19 23 23 C 1.36003 * 123.46055 * 133.62779 * 19 17 16 24 24 C 1.46931 * 118.89543 * 305.91074 * 16 15 14 25 25 C 1.52103 * 110.51115 * 276.65139 * 12 11 10 26 26 H 0.96997 * 120.00760 * 359.97438 * 1 2 3 27 27 H 1.09008 * 109.87937 * 59.55936 * 10 9 7 28 28 H 1.09010 * 109.87949 * 298.41526 * 10 9 7 29 29 H 1.08997 * 110.73652 * 220.15187 * 11 10 9 30 30 H 1.08998 * 110.73006 * 96.83781 * 11 10 9 31 31 H 1.08999 * 110.37467 * 84.52114 * 13 9 7 32 32 H 1.08996 * 110.38030 * 322.17086 * 13 9 7 33 33 H 1.08995 * 109.47651 * 304.09909 * 14 12 11 34 34 H 1.08994 * 109.47449 * 184.08119 * 14 12 11 35 35 H 1.09003 * 109.59724 * 293.53900 * 15 14 12 36 36 H 1.08996 * 109.59815 * 173.06491 * 15 14 12 37 37 H 1.07997 * 123.45630 * 359.97013 * 20 19 17 38 38 H 1.08000 * 124.70978 * 180.02562 * 21 20 19 39 39 H 1.07999 * 124.59272 * 0.04400 * 23 19 17 40 40 H 1.09006 * 109.59649 * 173.85144 * 24 16 15 41 41 H 1.08997 * 109.60068 * 294.32249 * 24 16 15 42 42 H 1.09002 * 109.47486 * 55.90601 * 25 12 11 43 43 H 1.09002 * 109.47496 * 175.91669 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2850 2.7464 -0.0006 6 1 3.1038 1.6966 1.2124 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1380 -2.5324 -0.0006 11 6 -0.4504 -4.0448 -0.0267 12 6 0.8506 -4.6550 -0.5913 13 6 1.9348 -3.7322 -0.0016 14 6 1.0297 -6.0814 -0.0942 15 6 -0.1063 -6.9572 -0.6363 16 7 -0.1634 -6.8039 -2.0964 17 6 -0.1081 -7.8835 -2.9013 18 8 -0.0739 -8.9999 -2.4197 19 6 -0.0888 -7.7115 -4.3630 20 6 -0.9825 -6.8261 -5.0725 21 6 -0.7856 -6.8304 -6.3855 22 16 0.5154 -7.9290 -6.8105 23 6 0.7728 -8.3696 -5.1842 24 6 -0.2756 -5.4536 -2.6647 25 6 0.8556 -4.5868 -2.1108 26 1 -0.4851 0.8400 0.0004 27 1 -0.5578 -2.0519 -0.8845 28 1 -0.5548 -2.0833 0.9010 29 1 -1.2926 -4.2536 -0.6863 30 1 -0.6456 -4.4159 0.9794 31 1 2.1811 -4.0380 1.0152 32 1 2.8260 -3.7446 -0.6289 33 1 1.0085 -6.0918 0.9954 34 1 1.9864 -6.4703 -0.4429 35 1 -1.0529 -6.6407 -0.1981 36 1 0.0848 -8.0005 -0.3853 37 1 -1.7338 -6.2226 -4.5850 38 1 -1.3474 -6.2393 -7.0935 39 1 1.5190 -9.0756 -4.8510 40 1 -0.1961 -5.5061 -3.7506 41 1 -1.2356 -5.0185 -2.3867 42 1 0.7129 -3.5540 -2.4287 43 1 1.8099 -4.9545 -2.4879 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035152381.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:02 Heat of formation + Delta-G solvation = 11.374131 kcal Electronic energy + Delta-G solvation = -25340.341421 eV Core-core repulsion = 21898.097307 eV Total energy + Delta-G solvation = -3442.244114 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.73565 -40.11524 -37.86706 -37.20718 -34.76279 -32.64979 -32.07040 -30.77232 -30.41818 -28.44896 -26.51915 -25.55641 -24.45132 -23.60149 -22.10629 -21.63050 -20.40465 -19.41520 -18.95347 -18.34172 -17.35079 -17.17573 -16.78463 -16.37366 -16.14457 -15.65814 -15.62473 -14.93783 -14.76291 -14.48130 -14.17723 -14.10133 -13.89149 -13.80547 -13.67007 -13.44467 -13.28364 -13.00195 -12.94236 -12.72295 -12.30409 -12.24931 -12.09175 -11.99351 -11.90691 -11.75529 -11.47932 -11.23878 -11.06971 -10.94132 -10.65591 -9.98650 -9.67111 -9.27847 -8.83555 -7.81536 -5.15844 -0.08746 0.64636 0.94503 1.10726 1.46780 1.49226 1.55558 1.87169 2.15565 2.51640 3.36178 3.54171 3.63459 3.73143 3.80206 3.88669 3.99643 4.14013 4.23041 4.33283 4.39631 4.49554 4.50443 4.62898 4.65634 4.72534 4.82062 4.82804 4.87073 4.91902 4.97896 5.06757 5.12616 5.15835 5.18935 5.26664 5.39698 5.44062 5.48885 5.61514 5.74314 5.84501 6.23802 6.33860 7.05597 7.14940 7.82482 8.47368 9.28198 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.017920 B = 0.003345 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.136630 B = 8369.301904 C = 9273.289145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.062 4.062 3 Si 0.974 3.026 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.280 1.280 7 C -0.242 4.242 8 H 0.077 0.923 9 N -0.624 5.624 10 C 0.190 3.810 11 C -0.121 4.121 12 C -0.058 4.058 13 C 0.141 3.859 14 C -0.106 4.106 15 C 0.116 3.884 16 N -0.594 5.594 17 C 0.578 3.422 18 O -0.583 6.583 19 C -0.175 4.175 20 C -0.126 4.126 21 C -0.225 4.225 22 S 0.226 5.774 23 C -0.210 4.210 24 C 0.106 3.894 25 C -0.105 4.105 26 H 0.246 0.754 27 H 0.013 0.987 28 H -0.001 1.001 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.020 0.980 32 H 0.035 0.965 33 H 0.087 0.913 34 H 0.064 0.936 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.162 0.838 38 H 0.198 0.802 39 H 0.169 0.831 40 H 0.109 0.891 41 H 0.083 0.917 42 H 0.062 0.938 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.009 -16.122 -12.943 20.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.255 4.255 3 Si 0.802 3.198 4 H -0.203 1.203 5 H -0.220 1.220 6 H -0.207 1.207 7 C -0.371 4.371 8 H 0.095 0.905 9 N -0.350 5.350 10 C 0.065 3.935 11 C -0.158 4.158 12 C -0.059 4.059 13 C 0.016 3.984 14 C -0.145 4.145 15 C -0.006 4.006 16 N -0.325 5.325 17 C 0.366 3.634 18 O -0.465 6.465 19 C -0.193 4.193 20 C -0.154 4.154 21 C -0.359 4.359 22 S 0.492 5.508 23 C -0.348 4.348 24 C -0.016 4.016 25 C -0.143 4.143 26 H 0.055 0.945 27 H 0.031 0.969 28 H 0.017 0.983 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.038 0.962 32 H 0.053 0.947 33 H 0.105 0.895 34 H 0.082 0.918 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.180 0.820 38 H 0.215 0.785 39 H 0.187 0.813 40 H 0.127 0.873 41 H 0.101 0.899 42 H 0.081 0.919 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.366 -16.878 -14.051 22.003 hybrid contribution -0.134 1.746 1.905 2.587 sum -1.500 -15.132 -12.146 19.461 Atomic orbital electron populations 1.70169 1.06111 1.25157 1.58322 1.25554 0.96549 1.00676 1.02761 0.85226 0.77203 0.79230 0.78113 1.20320 1.22028 1.20673 1.19385 0.90852 0.83955 1.42949 0.90477 1.44776 1.02495 1.00812 1.86902 1.20886 0.83483 0.91796 0.97321 1.22796 0.97111 0.95109 1.00833 1.20934 0.95489 0.94184 0.95284 1.21656 0.95050 0.84755 0.96937 1.21648 0.98594 0.92811 1.01401 1.21680 0.99450 1.00894 0.78602 1.48063 1.70946 1.06544 1.06964 1.18064 0.75173 0.83699 0.86491 1.90749 1.52927 1.25549 1.77265 1.20226 1.02207 1.03611 0.93267 1.21382 1.00820 0.99529 0.93718 1.25906 1.04271 1.06188 0.99584 1.82917 1.29677 1.36351 1.01862 1.25658 1.04506 1.04702 0.99983 1.22117 0.99174 0.80281 1.00049 1.21448 0.98839 0.99715 0.94281 0.94505 0.96857 0.98324 0.90026 0.91293 0.96215 0.94706 0.89488 0.91772 0.89965 0.89569 0.82039 0.78541 0.81320 0.87302 0.89931 0.91941 0.92109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.41 10.31 21.65 0.22 -56.18 16 2 C -0.06 -3.52 5.49 84.86 0.47 -3.05 16 3 Si 0.97 45.54 29.55 68.60 2.03 47.57 16 4 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 5 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 6 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 7 C -0.24 -13.53 10.28 84.03 0.86 -12.66 16 8 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 9 N -0.62 -31.46 3.39 -692.76 -2.35 -33.80 16 10 C 0.19 9.09 5.00 86.76 0.43 9.53 16 11 C -0.12 -4.09 4.92 31.56 0.16 -3.94 16 12 C -0.06 -1.81 0.55 -51.92 -0.03 -1.84 16 13 C 0.14 5.63 6.15 86.55 0.53 6.17 16 14 C -0.11 -2.72 4.84 30.42 0.15 -2.57 16 15 C 0.12 2.83 6.16 86.41 0.53 3.36 16 16 N -0.59 -14.99 2.97 -823.29 -2.44 -17.43 16 17 C 0.58 16.14 7.43 86.60 0.64 16.78 16 18 O -0.58 -20.15 16.48 -4.13 -0.07 -20.22 16 19 C -0.17 -3.97 5.13 -19.87 -0.10 -4.07 16 20 C -0.13 -2.20 7.88 22.67 0.18 -2.02 16 21 C -0.22 -3.00 11.12 66.64 0.74 -2.26 16 22 S 0.23 3.04 23.02 -56.49 -1.30 1.73 16 23 C -0.21 -4.15 10.77 67.30 0.72 -3.42 16 24 C 0.11 2.48 5.22 86.26 0.45 2.93 16 25 C -0.10 -3.08 4.83 30.26 0.15 -2.93 16 26 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 27 H 0.01 0.71 7.38 -2.38 -0.02 0.69 16 28 H 0.00 -0.08 7.50 -2.38 -0.02 -0.10 16 29 H 0.08 2.43 6.18 -2.39 -0.01 2.41 16 30 H 0.07 2.20 7.98 -2.39 -0.02 2.18 16 31 H 0.02 0.79 7.99 -2.39 -0.02 0.78 16 32 H 0.03 1.39 8.02 -2.39 -0.02 1.37 16 33 H 0.09 2.08 8.09 -2.39 -0.02 2.06 16 34 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.08 1.84 7.62 -2.39 -0.02 1.82 16 36 H 0.09 2.22 7.01 -2.39 -0.02 2.20 16 37 H 0.16 2.44 7.14 -2.91 -0.02 2.42 16 38 H 0.20 1.49 8.06 -2.91 -0.02 1.47 16 39 H 0.17 3.22 8.06 -2.91 -0.02 3.20 16 40 H 0.11 2.25 4.29 -2.38 -0.01 2.24 16 41 H 0.08 1.84 6.55 -2.39 -0.02 1.83 16 42 H 0.06 2.20 7.82 -2.39 -0.02 2.18 16 43 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -70.53 344.90 2.99 -67.53 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: 1.01 Total: 10.82 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: 5.88 Total: -0.02 kcal Atomic # 7 Polarization: -102.86 SS G_CDS: -4.56 Total: -107.42 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.07 Total: -20.22 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Atomic # 16 Polarization: 3.04 SS G_CDS: -1.30 Total: 1.73 kcal Total: -70.53 2.99 -67.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035152381.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.909 kcal (2) G-P(sol) polarization free energy of solvation -70.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds