Wall clock time and date at job start Tue Mar 31 2020 12:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 119.99932 * 2 1 4 4 H 1.48498 * 109.47099 * 4.86600 * 3 2 1 5 5 H 1.48504 * 109.47178 * 124.86742 * 3 2 1 6 6 H 1.48503 * 109.47093 * 244.86793 * 3 2 1 7 7 C 1.38813 * 120.00095 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00151 * 348.99148 * 7 2 1 9 9 N 1.36933 * 120.00293 * 168.98217 * 7 2 1 10 10 C 1.47083 * 125.62625 * 344.04069 * 9 7 2 11 11 C 1.54455 * 107.29767 * 180.95834 * 10 9 7 12 12 C 1.54394 * 102.87048 * 21.50428 * 11 10 9 13 13 C 1.47569 * 125.63147 * 163.71796 * 9 7 2 14 14 C 1.52105 * 110.51119 * 207.35875 * 12 11 10 15 15 C 1.53343 * 109.44214 * 295.90337 * 14 12 11 16 16 N 1.46929 * 108.69001 * 306.70294 * 15 14 12 17 17 C 1.34779 * 120.55163 * 234.37162 * 16 15 14 18 18 O 1.21702 * 119.99854 * 185.52961 * 17 16 15 19 19 C 1.46584 * 120.00188 * 5.53006 * 17 16 15 20 20 C 1.36645 * 125.45783 * 217.61016 * 19 17 16 21 21 C 1.37466 * 113.29874 * 179.97438 * 20 19 17 22 22 C 1.33820 * 115.10066 * 359.97438 * 21 20 19 23 23 S 1.70621 * 110.95446 * 359.76079 * 22 21 20 24 24 C 1.46935 * 118.89465 * 54.34133 * 16 15 14 25 25 C 1.52106 * 110.51114 * 83.32802 * 12 11 10 26 26 H 0.97002 * 119.99780 * 185.14126 * 1 2 3 27 27 H 1.09007 * 109.87429 * 300.37710 * 10 9 7 28 28 H 1.08997 * 109.88205 * 61.53130 * 10 9 7 29 29 H 1.09004 * 110.73376 * 139.83935 * 11 10 9 30 30 H 1.08995 * 110.73483 * 263.15977 * 11 10 9 31 31 H 1.09008 * 110.37855 * 275.53440 * 13 9 7 32 32 H 1.09004 * 110.37676 * 37.87994 * 13 9 7 33 33 H 1.09000 * 109.47303 * 55.89034 * 14 12 11 34 34 H 1.09000 * 109.47839 * 175.91052 * 14 12 11 35 35 H 1.09003 * 109.59910 * 186.93983 * 15 14 12 36 36 H 1.09000 * 109.60439 * 66.46385 * 15 14 12 37 37 H 1.08005 * 123.35071 * 359.97438 * 20 19 17 38 38 H 1.07995 * 122.45029 * 180.02562 * 21 20 19 39 39 H 1.08001 * 124.52546 * 179.97438 * 22 21 20 40 40 H 1.09003 * 109.60376 * 185.89039 * 24 16 15 41 41 H 1.09001 * 109.59863 * 65.41746 * 24 16 15 42 42 H 1.09007 * 109.47400 * 184.08240 * 25 12 11 43 43 H 1.08995 * 109.47949 * 304.10245 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2895 2.7439 0.1188 5 1 3.1908 1.6462 1.1488 6 1 3.0126 1.7491 -1.2676 7 6 2.0103 -1.2021 0.0005 8 1 1.4852 -2.1288 0.1796 9 7 3.3607 -1.2132 -0.2261 10 6 4.1420 -0.1076 -0.8009 11 6 5.6097 -0.5804 -0.8903 12 6 5.4775 -2.1185 -0.8690 13 6 4.2733 -2.3339 0.0722 14 6 6.7315 -2.7532 -0.2873 15 6 7.9259 -2.4542 -1.2013 16 7 7.5880 -2.8710 -2.5692 17 6 8.3881 -3.7199 -3.2441 18 8 8.1540 -3.9799 -4.4097 19 6 9.5404 -4.3301 -2.5742 20 6 10.7570 -4.5679 -3.1490 21 6 11.6591 -5.1507 -2.2910 22 6 11.1995 -5.3826 -1.0558 23 16 9.5810 -4.8656 -0.8999 24 6 6.3628 -2.3473 -3.1887 25 6 5.1775 -2.6470 -2.2633 26 1 -0.4850 -0.8367 0.0753 27 1 3.7685 0.1317 -1.7966 28 1 4.0736 0.7689 -0.1566 29 1 6.0671 -0.2454 -1.8213 30 1 6.1810 -0.2303 -0.0305 31 1 4.5915 -2.2972 1.1142 32 1 3.7887 -3.2859 -0.1442 33 1 6.9206 -2.3418 0.7041 34 1 6.5919 -3.8317 -0.2128 35 1 8.7987 -3.0080 -0.8554 36 1 8.1389 -1.3853 -1.1869 37 1 10.9870 -4.3224 -4.1753 38 1 12.6654 -5.4023 -2.5915 39 1 11.7771 -5.8334 -0.2623 40 1 6.2053 -2.8305 -4.1530 41 1 6.4550 -1.2701 -3.3277 42 1 5.0160 -3.7240 -2.2168 43 1 4.2819 -2.1616 -2.6511 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035155979.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:42 Heat of formation + Delta-G solvation = 18.622580 kcal Electronic energy + Delta-G solvation = -25341.152460 eV Core-core repulsion = 21899.222663 eV Total energy + Delta-G solvation = -3441.929797 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.73094 -40.21368 -38.42592 -37.38404 -34.98148 -33.14476 -32.59064 -30.73738 -30.51479 -28.67687 -26.20679 -25.38581 -24.30202 -24.19714 -22.45854 -21.82652 -20.12785 -20.05254 -19.47240 -18.55753 -17.49132 -17.06476 -16.94173 -16.80278 -16.23326 -15.82698 -15.52438 -15.27762 -15.08859 -14.82787 -14.53141 -14.45235 -14.17945 -13.74631 -13.61824 -13.57417 -13.30108 -13.07089 -12.99076 -12.90596 -12.57328 -12.26716 -12.01845 -11.88875 -11.63458 -11.60130 -11.41029 -11.33968 -11.10778 -10.96568 -10.58729 -9.95378 -9.67036 -9.33598 -9.10276 -8.58370 -5.49662 -0.41827 0.42315 0.96701 1.40416 1.47123 1.50711 1.73021 1.83940 2.05977 2.54708 3.15056 3.33301 3.43626 3.51907 3.69121 3.80409 4.02074 4.07906 4.16592 4.20539 4.29205 4.40183 4.42405 4.53997 4.55768 4.60012 4.66000 4.71211 4.74570 4.85300 4.89615 5.01843 5.03228 5.05231 5.08381 5.23236 5.24893 5.34318 5.38324 5.40510 5.51410 5.59822 6.12174 6.25588 6.84914 6.95639 7.46939 8.12890 8.88685 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.029960 B = 0.003254 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.350689 B = 8603.454675 C = 8851.522521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.086 4.086 3 Si 1.122 2.878 4 H -0.316 1.316 5 H -0.280 1.280 6 H -0.255 1.255 7 C -0.306 4.306 8 H 0.038 0.962 9 N -0.631 5.631 10 C 0.101 3.899 11 C -0.111 4.111 12 C -0.059 4.059 13 C 0.141 3.859 14 C -0.112 4.112 15 C 0.096 3.904 16 N -0.600 5.600 17 C 0.586 3.414 18 O -0.578 6.578 19 C -0.301 4.301 20 C -0.064 4.064 21 C -0.157 4.157 22 C -0.234 4.234 23 S 0.247 5.753 24 C 0.121 3.879 25 C -0.106 4.106 26 H 0.245 0.755 27 H 0.028 0.972 28 H 0.022 0.978 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.036 0.964 32 H 0.026 0.974 33 H 0.105 0.895 34 H 0.070 0.930 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.147 0.853 38 H 0.167 0.833 39 H 0.197 0.803 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.056 0.944 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.725 -8.280 -0.568 30.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.278 4.278 3 Si 0.951 3.049 4 H -0.246 1.246 5 H -0.207 1.207 6 H -0.180 1.180 7 C -0.435 4.435 8 H 0.056 0.944 9 N -0.359 5.359 10 C -0.023 4.023 11 C -0.149 4.149 12 C -0.060 4.060 13 C 0.016 3.984 14 C -0.150 4.150 15 C -0.027 4.027 16 N -0.331 5.331 17 C 0.375 3.625 18 O -0.460 6.460 19 C -0.421 4.421 20 C -0.098 4.098 21 C -0.187 4.187 22 C -0.372 4.372 23 S 0.515 5.485 24 C -0.001 4.001 25 C -0.145 4.145 26 H 0.054 0.946 27 H 0.046 0.954 28 H 0.039 0.961 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.054 0.946 32 H 0.045 0.955 33 H 0.123 0.877 34 H 0.089 0.911 35 H 0.120 0.880 36 H 0.115 0.885 37 H 0.164 0.836 38 H 0.184 0.816 39 H 0.214 0.786 40 H 0.096 0.904 41 H 0.105 0.895 42 H 0.075 0.925 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 28.304 -6.840 -0.022 29.119 hybrid contribution -0.050 -2.023 -1.118 2.312 sum 28.254 -8.864 -1.140 29.634 Atomic orbital electron populations 1.71028 1.07009 1.28639 1.54791 1.27270 0.96607 1.04829 0.99050 0.83169 0.72110 0.71315 0.78348 1.24612 1.20723 1.18013 1.20028 0.83439 0.93804 1.46211 0.94362 1.44902 1.03120 1.14843 1.73035 1.22129 0.93358 0.91151 0.95634 1.22695 0.93835 0.94358 1.03969 1.21011 0.94854 0.95601 0.94507 1.21762 0.89848 0.90211 0.96576 1.21754 0.92001 1.01484 0.99769 1.22433 0.98258 1.02555 0.79412 1.48056 1.23362 1.45112 1.16599 1.17439 0.81669 0.78092 0.85281 1.90792 1.73351 1.63917 1.17900 1.24500 0.99595 1.16712 1.01287 1.20956 0.91005 0.96527 1.01310 1.20214 1.02491 1.03182 0.92776 1.25971 1.01613 1.06702 1.02876 1.83213 1.08707 1.52483 1.04120 1.21627 0.82344 0.99826 0.96318 1.21547 0.97463 1.00637 0.94815 0.94620 0.95436 0.96070 0.88760 0.88641 0.94625 0.95523 0.87674 0.91115 0.88002 0.88480 0.83574 0.81566 0.78583 0.90364 0.89485 0.92540 0.92134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.87 13.70 21.65 0.30 -63.58 16 2 C -0.09 -5.19 5.50 84.86 0.47 -4.72 16 3 Si 1.12 54.54 24.55 68.60 1.68 56.23 16 4 H -0.32 -15.95 7.11 99.48 0.71 -15.24 16 5 H -0.28 -12.58 6.86 99.48 0.68 -11.89 16 6 H -0.25 -10.91 5.57 99.48 0.55 -10.36 16 7 C -0.31 -17.96 10.56 84.03 0.89 -17.07 16 8 H 0.04 2.46 8.06 -2.91 -0.02 2.44 16 9 N -0.63 -29.92 3.28 -692.29 -2.27 -32.19 16 10 C 0.10 4.04 4.27 86.76 0.37 4.41 16 11 C -0.11 -2.98 4.92 31.56 0.16 -2.83 16 12 C -0.06 -1.58 0.55 -51.84 -0.03 -1.61 16 13 C 0.14 5.22 6.16 86.63 0.53 5.75 16 14 C -0.11 -2.08 4.84 30.41 0.15 -1.94 16 15 C 0.10 1.58 5.71 86.41 0.49 2.07 16 16 N -0.60 -13.61 2.96 -823.10 -2.44 -16.04 16 17 C 0.59 15.41 7.55 86.42 0.65 16.06 16 18 O -0.58 -19.78 16.47 -4.35 -0.07 -19.85 16 19 C -0.30 -6.05 5.64 24.08 0.14 -5.92 16 20 C -0.06 -1.11 10.19 21.71 0.22 -0.89 16 21 C -0.16 -1.84 10.15 21.08 0.21 -1.63 16 22 C -0.23 -2.32 10.92 66.82 0.73 -1.59 16 23 S 0.25 3.26 19.63 -56.49 -1.11 2.15 16 24 C 0.12 3.03 6.11 86.41 0.53 3.56 16 25 C -0.11 -3.05 4.87 30.41 0.15 -2.90 16 26 H 0.24 16.23 8.73 -92.71 -0.81 15.42 16 27 H 0.03 1.18 7.08 -2.38 -0.02 1.16 16 28 H 0.02 0.90 3.56 -2.39 -0.01 0.89 16 29 H 0.09 2.11 6.17 -2.38 -0.01 2.10 16 30 H 0.10 2.11 7.98 -2.39 -0.02 2.09 16 31 H 0.04 1.26 8.00 -2.38 -0.02 1.25 16 32 H 0.03 1.05 8.03 -2.38 -0.02 1.03 16 33 H 0.10 1.57 8.09 -2.39 -0.02 1.55 16 34 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.10 1.38 3.57 -19.32 -0.07 1.31 16 36 H 0.10 1.32 7.62 -2.39 -0.02 1.30 16 37 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 38 H 0.17 1.12 8.06 -2.91 -0.02 1.09 16 39 H 0.20 0.77 8.06 -2.91 -0.02 0.74 16 40 H 0.08 2.22 7.03 -2.39 -0.02 2.20 16 41 H 0.09 1.95 6.55 -2.39 -0.02 1.93 16 42 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 43 H 0.06 2.08 7.82 -2.39 -0.02 2.06 16 Total: -1.00 -78.49 336.82 2.50 -76.00 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: 0.75 Total: 6.53 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: 5.66 Total: -9.24 kcal Atomic # 7 Polarization: -107.40 SS G_CDS: -4.41 Total: -111.81 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.07 Total: -19.85 kcal Atomic # 14 Polarization: 54.54 SS G_CDS: 1.68 Total: 56.23 kcal Atomic # 16 Polarization: 3.26 SS G_CDS: -1.11 Total: 2.15 kcal Total: -78.49 2.50 -76.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035155979.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.621 kcal (2) G-P(sol) polarization free energy of solvation -78.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds