Wall clock time and date at job start Tue Mar 31 2020 12:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33396 * 125.20263 * 2 1 4 4 C 1.38425 * 114.91818 * 179.79088 * 3 2 1 5 5 C 1.33388 * 114.92032 * 0.42801 * 4 3 2 6 6 C 1.50696 * 125.20247 * 179.85867 * 5 4 3 7 7 H 1.09004 * 115.56587 * 334.03119 * 6 5 4 8 8 C 1.53000 * 117.50175 * 188.34313 * 6 5 4 9 9 C 1.52997 * 60.00347 * 252.51187 * 8 6 5 10 10 H 1.08997 * 117.50044 * 107.48590 * 9 8 6 11 11 C 1.50698 * 117.51636 * 252.52170 * 9 8 6 12 12 O 1.21279 * 120.00572 * 68.62479 * 11 9 8 13 13 N 1.34779 * 119.99924 * 248.62494 * 11 9 8 14 14 C 1.46498 * 120.00504 * 180.02562 * 13 11 9 15 15 C 1.52993 * 109.47334 * 179.97438 * 14 13 11 16 16 H 1.09001 * 112.96605 * 53.31949 * 15 14 13 17 17 C 1.53955 * 113.76948 * 184.99932 * 15 14 13 18 18 C 1.53940 * 86.28827 * 137.90793 * 17 15 14 19 19 N 1.47575 * 86.12013 * 336.39003 * 18 17 15 20 20 C 1.36938 * 134.49617 * 204.63409 * 19 18 17 21 21 H 1.07995 * 120.00390 * 180.02562 * 20 19 18 22 22 C 1.38810 * 119.99858 * 0.02562 * 20 19 18 23 23 N 1.31620 * 120.00226 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 120.00199 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47006 * 59.99583 * 24 22 20 26 26 H 1.48497 * 109.47119 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.46810 * 299.99708 * 24 22 20 28 28 S 1.75886 * 109.59724 * 359.59723 * 5 4 3 29 29 H 1.09002 * 109.47323 * 269.98050 * 1 2 3 30 30 H 1.09002 * 109.47045 * 29.97887 * 1 2 3 31 31 H 1.08991 * 109.47029 * 149.97124 * 1 2 3 32 32 H 1.08000 * 122.54072 * 0.02562 * 3 2 1 33 33 H 1.07997 * 122.53951 * 180.27620 * 4 3 2 34 34 H 1.09002 * 117.49696 * 0.02562 * 8 6 5 35 35 H 1.09002 * 117.50343 * 145.02291 * 8 6 5 36 36 H 0.97006 * 119.99585 * 359.97438 * 13 11 9 37 37 H 1.09001 * 109.46674 * 300.00166 * 14 13 11 38 38 H 1.08999 * 109.46871 * 59.99255 * 14 13 11 39 39 H 1.08996 * 113.74013 * 252.25158 * 17 15 14 40 40 H 1.08999 * 113.73882 * 23.55991 * 17 15 14 41 41 H 1.08996 * 113.77222 * 90.70108 * 18 17 15 42 42 H 1.09006 * 113.76625 * 222.09242 * 18 17 15 43 43 H 0.97002 * 120.00297 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0900 0.0000 4 6 3.6380 0.8429 0.0046 5 6 3.9751 -0.4477 -0.0007 6 6 5.3860 -0.9771 -0.0005 7 1 6.1378 -0.3126 -0.4265 8 6 5.5762 -2.4815 -0.2040 9 6 5.8088 -1.8607 1.1749 10 1 5.0664 -2.0591 1.9479 11 6 7.2325 -1.7453 1.6553 12 8 7.9947 -0.9732 1.1133 13 7 7.6588 -2.5001 2.6873 14 6 9.0427 -2.3876 3.1547 15 6 9.2643 -3.3447 4.3275 16 1 8.9767 -4.3710 4.0990 17 6 10.6549 -3.2198 4.9761 18 6 9.9253 -3.3376 6.3265 19 7 8.7318 -2.8467 5.6106 20 6 7.5891 -2.1922 5.9860 21 1 6.8447 -1.9375 5.2462 22 6 7.3875 -1.8560 7.3176 23 7 8.2944 -2.1667 8.2195 24 14 5.8289 -0.9625 7.8298 25 1 4.6468 -1.7929 7.4864 26 1 5.8553 -0.7214 9.2948 27 1 5.7457 0.3366 7.1153 28 16 2.5210 -1.4372 -0.0006 29 1 -0.3634 -0.0003 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8897 -0.5142 32 1 1.8670 2.0895 0.0004 33 1 4.3721 1.6350 0.0095 34 1 4.6808 -3.0883 -0.3385 35 1 6.4530 -2.8068 -0.7639 36 1 7.0491 -3.1174 3.1210 37 1 9.7225 -2.6441 2.3423 38 1 9.2344 -1.3649 3.4795 39 1 11.3167 -4.0585 4.7603 40 1 11.1284 -2.2511 4.8160 41 1 9.8311 -4.3618 6.6872 42 1 10.2951 -2.6498 7.0871 43 1 8.1533 -1.9321 9.1501 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038790660.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:45 Heat of formation + Delta-G solvation = 68.820009 kcal Electronic energy + Delta-G solvation = -23770.999178 eV Core-core repulsion = 20331.246104 eV Total energy + Delta-G solvation = -3439.753074 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.88448 -38.37979 -37.89916 -36.39333 -34.03811 -32.19233 -31.97214 -28.35926 -27.84014 -27.07732 -24.16539 -23.37332 -23.28304 -22.02909 -21.64673 -20.00247 -19.24856 -19.04064 -17.29012 -16.90872 -16.46394 -15.78262 -15.47335 -15.25212 -14.62479 -14.44220 -14.18289 -13.99712 -13.70184 -13.40185 -13.32603 -13.01946 -12.78707 -12.51992 -12.39702 -12.17403 -11.88971 -11.66767 -11.43650 -11.11972 -11.02673 -10.95136 -10.74309 -10.71966 -10.61662 -10.56115 -10.03516 -9.77651 -9.67322 -9.35684 -8.80322 -8.61067 -8.60130 -8.46772 -6.90460 -5.77144 -3.09726 0.78059 1.40658 1.81665 2.50351 2.77612 3.37757 3.42241 3.43421 3.45362 3.82923 4.38822 4.44496 4.59644 4.65161 4.75101 4.99024 5.06682 5.13749 5.21972 5.23701 5.30938 5.38989 5.45640 5.50218 5.61089 5.66683 5.70090 5.81336 5.89603 5.90958 6.04195 6.07587 6.16117 6.30642 6.37095 6.39618 6.61137 6.70493 6.87623 7.23738 7.40194 7.58378 7.87673 7.97850 8.53138 9.03591 9.70457 10.58533 11.39519 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.012722 B = 0.003313 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.349792 B = 8448.301949 C =10077.355249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.186 4.186 3 C -0.137 4.137 4 C -0.130 4.130 5 C -0.144 4.144 6 C -0.054 4.054 7 H 0.136 0.864 8 C -0.144 4.144 9 C -0.173 4.173 10 H 0.126 0.874 11 C 0.541 3.459 12 O -0.551 6.551 13 N -0.707 5.707 14 C 0.123 3.877 15 C 0.126 3.874 16 H 0.050 0.950 17 C -0.156 4.156 18 C 0.159 3.841 19 N -0.602 5.602 20 C -0.220 4.220 21 H 0.078 0.922 22 C -0.006 4.006 23 N -0.920 5.920 24 Si 0.906 3.094 25 H -0.286 1.286 26 H -0.289 1.289 27 H -0.285 1.285 28 S 0.098 5.902 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.103 0.897 35 H 0.109 0.891 36 H 0.404 0.596 37 H 0.060 0.940 38 H 0.072 0.928 39 H 0.054 0.946 40 H 0.076 0.924 41 H 0.027 0.973 42 H 0.074 0.926 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.038 -0.198 -17.837 20.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.303 4.303 3 C -0.167 4.167 4 C -0.159 4.159 5 C -0.261 4.261 6 C -0.074 4.074 7 H 0.154 0.846 8 C -0.182 4.182 9 C -0.195 4.195 10 H 0.144 0.856 11 C 0.327 3.673 12 O -0.430 6.430 13 N -0.356 5.356 14 C -0.001 4.001 15 C 0.018 3.982 16 H 0.067 0.933 17 C -0.195 4.195 18 C 0.033 3.967 19 N -0.329 5.329 20 C -0.348 4.348 21 H 0.096 0.904 22 C -0.202 4.202 23 N -0.567 5.567 24 Si 0.736 3.264 25 H -0.212 1.212 26 H -0.215 1.215 27 H -0.211 1.211 28 S 0.362 5.638 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.156 0.844 33 H 0.159 0.841 34 H 0.121 0.879 35 H 0.128 0.872 36 H 0.238 0.762 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.072 0.928 40 H 0.095 0.905 41 H 0.044 0.956 42 H 0.092 0.908 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.986 -1.040 -17.945 20.562 hybrid contribution -0.994 1.649 0.812 2.090 sum -10.980 0.608 -17.132 20.358 Atomic orbital electron populations 1.20323 0.87885 1.02991 1.02793 1.24491 0.99912 0.95820 1.10058 1.20057 0.92793 0.99242 1.04595 1.20058 0.96272 0.95973 1.03641 1.23691 0.96315 0.96399 1.09704 1.20456 0.91929 0.93935 1.01095 0.84589 1.23102 1.03936 0.94679 0.96496 1.22449 0.96687 1.06873 0.93494 0.85606 1.19423 0.87650 0.80211 0.80053 1.90661 1.56539 1.37979 1.57786 1.45883 1.14153 1.42383 1.33218 1.21779 0.81051 1.01525 0.95765 1.22503 0.93113 0.94808 0.87747 0.93313 1.23775 0.95136 1.00743 0.99831 1.22201 0.84535 0.96983 0.92939 1.46069 1.20415 1.64531 1.01861 1.18893 0.95074 1.28473 0.92347 0.90447 1.24745 0.98389 1.01380 0.95733 1.69805 1.34315 1.51331 1.01241 0.86293 0.82798 0.79713 0.77551 1.21233 1.21514 1.21122 1.84118 0.96336 1.09463 1.73851 0.90716 0.90600 0.91403 0.84396 0.84107 0.87864 0.87242 0.76187 0.92173 0.90945 0.92789 0.90497 0.95569 0.90813 0.93631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 10.38 36.01 0.37 -0.21 16 2 C -0.19 -1.87 6.51 -36.00 -0.23 -2.10 16 3 C -0.14 -1.43 10.05 -41.21 -0.41 -1.84 16 4 C -0.13 -1.50 10.05 -41.21 -0.41 -1.92 16 5 C -0.14 -1.73 6.14 -36.01 -0.22 -1.95 16 6 C -0.05 -0.66 5.73 -91.77 -0.53 -1.19 16 7 H 0.14 1.79 7.67 -51.93 -0.40 1.39 16 8 C -0.14 -1.55 9.75 -26.73 -0.26 -1.81 16 9 C -0.17 -2.31 5.89 -91.77 -0.54 -2.85 16 10 H 0.13 1.62 8.14 -51.93 -0.42 1.20 16 11 C 0.54 9.06 7.61 -10.99 -0.08 8.98 16 12 O -0.55 -10.87 16.26 5.56 0.09 -10.78 16 13 N -0.71 -11.92 5.53 -60.30 -0.33 -12.25 16 14 C 0.12 2.23 5.54 -4.05 -0.02 2.21 16 15 C 0.13 2.41 4.33 -66.86 -0.29 2.12 16 16 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 17 C -0.16 -2.84 7.86 -25.80 -0.20 -3.04 16 18 C 0.16 3.63 7.51 -2.98 -0.02 3.61 16 19 N -0.60 -14.67 3.57 -170.76 -0.61 -15.28 16 20 C -0.22 -5.93 10.51 -15.06 -0.16 -6.09 16 21 H 0.08 2.00 7.80 -52.49 -0.41 1.59 16 22 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 23 N -0.92 -27.02 11.38 55.49 0.63 -26.39 16 24 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 28 S 0.10 1.04 22.15 -107.50 -2.38 -1.34 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 33 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 34 H 0.10 0.96 7.27 -51.93 -0.38 0.58 16 35 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.40 6.44 8.47 -40.82 -0.35 6.09 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.08 1.39 8.10 -51.93 -0.42 0.97 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.07 1.88 7.15 -51.93 -0.37 1.51 16 43 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 375.43 15.07 5.66 5.66 Total: -1.00 -32.09 375.43 -11.61 -43.71 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -6.53 Total: 5.89 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -3.11 Total: -6.36 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: -0.31 Total: -53.93 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.09 Total: -10.78 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -2.38 Total: -1.34 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.09 -11.61 -43.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038790660.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.525 kcal (2) G-P(sol) polarization free energy of solvation -32.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds