Wall clock time and date at job start Tue Mar 31 2020 12:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33396 * 125.20263 * 2 1 4 4 C 1.38425 * 114.91818 * 179.79088 * 3 2 1 5 5 C 1.33388 * 114.92032 * 0.42801 * 4 3 2 6 6 C 1.50696 * 125.20247 * 179.85867 * 5 4 3 7 7 H 1.09004 * 115.56587 * 334.03119 * 6 5 4 8 8 C 1.53000 * 117.50175 * 188.34313 * 6 5 4 9 9 C 1.52997 * 60.00347 * 252.51187 * 8 6 5 10 10 H 1.08997 * 117.50044 * 107.48590 * 9 8 6 11 11 C 1.50698 * 117.51636 * 252.52170 * 9 8 6 12 12 O 1.21279 * 120.00572 * 68.62479 * 11 9 8 13 13 N 1.34779 * 119.99924 * 248.62494 * 11 9 8 14 14 C 1.46498 * 120.00504 * 180.02562 * 13 11 9 15 15 C 1.52993 * 109.47334 * 179.97438 * 14 13 11 16 16 H 1.09001 * 112.96605 * 53.31949 * 15 14 13 17 17 C 1.53955 * 113.76948 * 184.99932 * 15 14 13 18 18 C 1.53940 * 86.28827 * 137.90793 * 17 15 14 19 19 N 1.47575 * 86.12013 * 336.39003 * 18 17 15 20 20 C 1.36938 * 134.49617 * 204.63409 * 19 18 17 21 21 H 1.07995 * 120.00390 * 180.02562 * 20 19 18 22 22 C 1.38810 * 119.99858 * 0.02562 * 20 19 18 23 23 N 1.31620 * 120.00226 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 120.00199 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47006 * 59.99583 * 24 22 20 26 26 H 1.48497 * 109.47119 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.46810 * 299.99708 * 24 22 20 28 28 S 1.75886 * 109.59724 * 359.59723 * 5 4 3 29 29 H 1.09002 * 109.47323 * 269.98050 * 1 2 3 30 30 H 1.09002 * 109.47045 * 29.97887 * 1 2 3 31 31 H 1.08991 * 109.47029 * 149.97124 * 1 2 3 32 32 H 1.08000 * 122.54072 * 0.02562 * 3 2 1 33 33 H 1.07997 * 122.53951 * 180.27620 * 4 3 2 34 34 H 1.09002 * 117.49696 * 0.02562 * 8 6 5 35 35 H 1.09002 * 117.50343 * 145.02291 * 8 6 5 36 36 H 0.97006 * 119.99585 * 359.97438 * 13 11 9 37 37 H 1.09001 * 109.46674 * 300.00166 * 14 13 11 38 38 H 1.08999 * 109.46871 * 59.99255 * 14 13 11 39 39 H 1.08996 * 113.74013 * 252.25158 * 17 15 14 40 40 H 1.08999 * 113.73882 * 23.55991 * 17 15 14 41 41 H 1.08996 * 113.77222 * 90.70108 * 18 17 15 42 42 H 1.09006 * 113.76625 * 222.09242 * 18 17 15 43 43 H 0.97002 * 120.00297 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0900 0.0000 4 6 3.6380 0.8429 0.0046 5 6 3.9751 -0.4477 -0.0007 6 6 5.3860 -0.9771 -0.0005 7 1 6.1378 -0.3126 -0.4265 8 6 5.5762 -2.4815 -0.2040 9 6 5.8088 -1.8607 1.1749 10 1 5.0664 -2.0591 1.9479 11 6 7.2325 -1.7453 1.6553 12 8 7.9947 -0.9732 1.1133 13 7 7.6588 -2.5001 2.6873 14 6 9.0427 -2.3876 3.1547 15 6 9.2643 -3.3447 4.3275 16 1 8.9767 -4.3710 4.0990 17 6 10.6549 -3.2198 4.9761 18 6 9.9253 -3.3376 6.3265 19 7 8.7318 -2.8467 5.6106 20 6 7.5891 -2.1922 5.9860 21 1 6.8447 -1.9375 5.2462 22 6 7.3875 -1.8560 7.3176 23 7 8.2944 -2.1667 8.2195 24 14 5.8289 -0.9625 7.8298 25 1 4.6468 -1.7929 7.4864 26 1 5.8553 -0.7214 9.2948 27 1 5.7457 0.3366 7.1153 28 16 2.5210 -1.4372 -0.0006 29 1 -0.3634 -0.0003 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8897 -0.5142 32 1 1.8670 2.0895 0.0004 33 1 4.3721 1.6350 0.0095 34 1 4.6808 -3.0883 -0.3385 35 1 6.4530 -2.8068 -0.7639 36 1 7.0491 -3.1174 3.1210 37 1 9.7225 -2.6441 2.3423 38 1 9.2344 -1.3649 3.4795 39 1 11.3167 -4.0585 4.7603 40 1 11.1284 -2.2511 4.8160 41 1 9.8311 -4.3618 6.6872 42 1 10.2951 -2.6498 7.0871 43 1 8.1533 -1.9321 9.1501 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038790660.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:45 Heat of formation + Delta-G solvation = 50.476784 kcal Electronic energy + Delta-G solvation = -23771.794600 eV Core-core repulsion = 20331.246104 eV Total energy + Delta-G solvation = -3440.548495 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.15377 -39.77923 -39.03533 -37.43054 -35.50819 -34.20551 -32.70001 -29.99794 -29.56301 -27.93277 -25.39669 -25.29444 -24.08021 -23.35482 -22.70030 -21.38207 -20.71760 -20.07796 -18.80288 -18.02093 -17.76370 -17.09665 -17.00786 -16.50499 -16.12481 -15.82124 -15.59979 -15.00149 -14.87595 -14.78771 -14.61893 -13.97966 -13.81394 -13.59502 -13.35975 -13.30294 -13.13660 -13.03986 -12.93527 -12.70086 -12.61227 -12.40332 -12.33401 -11.87431 -11.78689 -11.68384 -11.54164 -11.52077 -11.36198 -10.87215 -10.81028 -10.04031 -9.41226 -9.30300 -8.88559 -7.87337 -5.18728 -0.04826 0.60407 0.99975 1.42073 1.43418 1.44502 1.49803 1.75583 2.17247 2.46708 2.82032 3.30321 3.37228 3.48394 3.58844 3.74640 3.95448 3.98339 4.06159 4.16626 4.19688 4.35417 4.41084 4.53541 4.61460 4.65098 4.71411 4.73467 4.77033 4.85921 4.88860 4.98010 5.05868 5.10088 5.10316 5.23437 5.33580 5.35359 5.44494 5.57889 5.61276 5.75283 5.98423 6.54162 6.95468 7.20364 7.65321 8.60091 9.29397 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.012722 B = 0.003313 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.349792 B = 8448.301949 C =10077.355249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.185 4.185 3 C -0.152 4.152 4 C -0.140 4.140 5 C -0.166 4.166 6 C -0.056 4.056 7 H 0.123 0.877 8 C -0.118 4.118 9 C -0.184 4.184 10 H 0.131 0.869 11 C 0.540 3.460 12 O -0.585 6.585 13 N -0.707 5.707 14 C 0.132 3.868 15 C 0.133 3.867 16 H 0.073 0.927 17 C -0.131 4.131 18 C 0.149 3.851 19 N -0.630 5.630 20 C -0.214 4.214 21 H 0.083 0.917 22 C -0.069 4.069 23 N -0.954 5.954 24 Si 0.964 3.036 25 H -0.274 1.274 26 H -0.296 1.296 27 H -0.286 1.286 28 S 0.106 5.894 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.156 0.844 33 H 0.141 0.859 34 H 0.123 0.877 35 H 0.116 0.884 36 H 0.409 0.591 37 H 0.082 0.918 38 H 0.039 0.961 39 H 0.095 0.905 40 H 0.077 0.923 41 H 0.023 0.977 42 H 0.038 0.962 43 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.542 -1.048 -19.755 22.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.302 4.302 3 C -0.181 4.181 4 C -0.170 4.170 5 C -0.283 4.283 6 C -0.076 4.076 7 H 0.141 0.859 8 C -0.156 4.156 9 C -0.206 4.206 10 H 0.149 0.851 11 C 0.327 3.673 12 O -0.466 6.466 13 N -0.356 5.356 14 C 0.007 3.993 15 C 0.027 3.973 16 H 0.090 0.910 17 C -0.169 4.169 18 C 0.024 3.976 19 N -0.357 5.357 20 C -0.343 4.343 21 H 0.101 0.899 22 C -0.261 4.261 23 N -0.603 5.603 24 Si 0.793 3.207 25 H -0.200 1.200 26 H -0.222 1.222 27 H -0.213 1.213 28 S 0.371 5.629 29 H 0.099 0.901 30 H 0.110 0.890 31 H 0.096 0.904 32 H 0.174 0.826 33 H 0.159 0.841 34 H 0.141 0.859 35 H 0.135 0.865 36 H 0.244 0.756 37 H 0.100 0.900 38 H 0.058 0.942 39 H 0.114 0.886 40 H 0.095 0.905 41 H 0.041 0.959 42 H 0.056 0.944 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -11.498 -1.917 -19.900 23.062 hybrid contribution -0.520 1.914 1.329 2.387 sum -12.018 -0.003 -18.571 22.120 Atomic orbital electron populations 1.20448 0.85828 1.04294 1.03552 1.24938 1.01332 0.95300 1.08656 1.20268 0.92321 1.00406 1.05102 1.20290 0.97149 0.96094 1.03444 1.23733 0.96572 0.96966 1.10995 1.20392 0.92078 0.94785 1.00367 0.85941 1.23207 1.04838 0.93723 0.93817 1.22353 0.94405 1.09160 0.94667 0.85105 1.19942 0.88733 0.79208 0.79387 1.90642 1.57854 1.39282 1.58836 1.45878 1.13822 1.42579 1.33294 1.21559 0.82375 0.99303 0.96013 1.22676 0.92908 0.95604 0.86107 0.90976 1.23569 0.95163 1.02453 0.95763 1.22177 0.85292 0.95724 0.94405 1.46422 1.20012 1.64758 1.04477 1.19252 0.95629 1.27093 0.92318 0.89892 1.25475 1.01181 1.03285 0.96196 1.69985 1.36017 1.53401 1.00946 0.85370 0.80194 0.78601 0.76551 1.20042 1.22211 1.21254 1.83989 0.95657 1.09595 1.73693 0.90102 0.89013 0.90426 0.82634 0.84111 0.85934 0.86526 0.75569 0.90004 0.94217 0.88645 0.90469 0.95888 0.94361 0.94558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 10.38 71.24 0.74 -0.23 16 2 C -0.18 -3.34 6.51 24.59 0.16 -3.18 16 3 C -0.15 -2.93 10.05 21.22 0.21 -2.72 16 4 C -0.14 -3.14 10.05 21.22 0.21 -2.93 16 5 C -0.17 -3.81 6.14 24.59 0.15 -3.66 16 6 C -0.06 -1.34 5.73 -11.54 -0.07 -1.40 16 7 H 0.12 3.25 7.67 -2.38 -0.02 3.24 16 8 C -0.12 -2.32 9.75 30.59 0.30 -2.02 16 9 C -0.18 -4.70 5.89 -11.54 -0.07 -4.77 16 10 H 0.13 3.21 8.14 -2.39 -0.02 3.19 16 11 C 0.54 17.68 7.61 87.66 0.67 18.35 16 12 O -0.58 -23.01 16.26 -3.03 -0.05 -23.06 16 13 N -0.71 -22.96 5.53 -463.08 -2.56 -25.52 16 14 C 0.13 4.61 5.54 86.38 0.48 5.09 16 15 C 0.13 4.83 4.33 45.09 0.20 5.02 16 16 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 17 C -0.13 -4.50 7.86 31.25 0.25 -4.25 16 18 C 0.15 6.85 7.51 86.48 0.65 7.50 16 19 N -0.63 -30.51 3.57 -694.17 -2.48 -32.99 16 20 C -0.21 -11.56 10.51 84.03 0.88 -10.68 16 21 H 0.08 4.26 7.80 -2.91 -0.02 4.24 16 22 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 23 N -0.95 -57.58 11.38 21.65 0.25 -57.33 16 24 Si 0.96 46.17 29.55 68.60 2.03 48.20 16 25 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 26 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 27 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 28 S 0.11 2.05 22.15 -56.49 -1.25 0.80 16 29 H 0.08 0.88 8.14 -2.39 -0.02 0.87 16 30 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.16 2.33 8.06 -2.91 -0.02 2.30 16 33 H 0.14 3.02 8.06 -2.91 -0.02 2.99 16 34 H 0.12 1.94 7.27 -2.39 -0.02 1.93 16 35 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.41 12.41 8.47 -92.70 -0.79 11.63 16 37 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 38 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 40 H 0.08 2.67 8.10 -2.39 -0.02 2.65 16 41 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.04 2.01 7.15 -2.38 -0.02 2.00 16 43 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -70.34 375.43 1.39 -68.95 By element: Atomic # 1 Polarization: 24.02 SS G_CDS: 0.23 Total: 24.25 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: 5.23 Total: -3.31 kcal Atomic # 7 Polarization: -111.04 SS G_CDS: -4.79 Total: -115.84 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -0.05 Total: -23.06 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -1.25 Total: 0.80 kcal Total: -70.34 1.39 -68.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038790660.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.429 kcal (2) G-P(sol) polarization free energy of solvation -70.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds