Wall clock time and date at job start Tue Mar 31 2020 12:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99962 * 2 1 4 4 H 1.48501 * 109.47120 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47070 * 299.99637 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99633 * 3 2 1 7 7 C 1.38807 * 119.99678 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00090 * 191.02701 * 7 2 1 9 9 N 1.36939 * 120.00551 * 11.03019 * 7 2 1 10 10 C 1.44787 * 120.18040 * 202.57064 * 9 7 2 11 11 C 1.51517 * 112.21827 * 264.53266 * 10 9 7 12 12 C 1.51310 * 113.24633 * 285.36283 * 11 10 9 13 13 H 1.09000 * 111.31557 * 186.10204 * 12 11 10 14 14 C 1.54708 * 106.48646 * 307.66577 * 12 11 10 15 15 C 1.54238 * 104.37744 * 89.11607 * 14 12 11 16 16 C 1.50870 * 105.27047 * 11.56845 * 15 14 12 17 17 H 1.08997 * 106.52795 * 121.73422 * 16 15 14 18 18 C 1.49814 * 120.17721 * 22.54139 * 9 7 2 19 19 N 1.48665 * 109.01921 * 62.92369 * 12 11 10 20 20 C 1.34767 * 127.84423 * 96.43722 * 19 12 11 21 21 O 1.21287 * 120.00113 * 359.97438 * 20 19 12 22 22 C 1.50698 * 120.00212 * 180.02562 * 20 19 12 23 23 C 1.50698 * 109.47451 * 180.02562 * 22 20 19 24 24 C 1.38419 * 122.54349 * 89.99839 * 23 22 20 25 25 C 1.33392 * 114.92608 * 179.97438 * 24 23 22 26 26 S 1.75881 * 109.59206 * 0.02562 * 25 24 23 27 27 C 1.33392 * 122.53595 * 269.71029 * 23 22 20 28 28 H 0.97003 * 120.00165 * 0.02562 * 1 2 3 29 29 H 1.09001 * 108.93456 * 143.82124 * 10 9 7 30 30 H 1.09004 * 108.93309 * 25.23761 * 10 9 7 31 31 H 1.09003 * 108.72426 * 164.39540 * 11 10 9 32 32 H 1.08992 * 108.72895 * 46.34004 * 11 10 9 33 33 H 1.09010 * 110.45789 * 208.67743 * 14 12 11 34 34 H 1.08999 * 110.45700 * 331.22896 * 14 12 11 35 35 H 1.09003 * 110.28226 * 252.61859 * 15 14 12 36 36 H 1.09003 * 110.36583 * 130.55854 * 15 14 12 37 37 H 1.08997 * 109.54551 * 270.58135 * 18 9 7 38 38 H 1.08994 * 109.54664 * 30.85883 * 18 9 7 39 39 H 1.09002 * 109.47365 * 300.00164 * 22 20 19 40 40 H 1.08997 * 109.47416 * 60.00200 * 22 20 19 41 41 H 1.08007 * 122.54026 * 359.95687 * 24 23 22 42 42 H 1.07994 * 125.20400 * 179.97438 * 25 24 23 43 43 H 1.07995 * 125.20808 * 0.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0752 -1.2108 0.1794 9 7 1.3445 -2.3772 -0.2258 10 6 1.9027 -3.6307 0.2362 11 6 2.6920 -4.3397 -0.8455 12 6 1.8168 -4.9845 -1.8980 13 1 2.4084 -5.5738 -2.5985 14 6 0.7965 -5.8667 -1.1403 15 6 -0.3898 -4.9227 -0.8566 16 6 -0.1277 -3.6933 -1.6910 17 1 -0.9880 -3.5767 -2.3500 18 6 0.0343 -2.3727 -0.9524 19 7 1.0439 -3.9263 -2.6000 20 6 1.3414 -3.3218 -3.7672 21 8 2.3472 -3.6303 -4.3709 22 6 0.4251 -2.2618 -4.3219 23 6 0.9802 -1.7500 -5.6261 24 6 0.6558 -2.3163 -6.8468 25 6 1.2332 -1.7429 -7.9037 26 16 2.2506 -0.4112 -7.3698 27 6 1.8171 -0.7134 -5.6920 28 1 -0.4850 0.8401 -0.0004 29 1 1.0909 -4.2797 0.5648 30 1 2.5606 -3.4342 1.0828 31 1 3.3070 -5.1108 -0.3814 32 1 3.3482 -3.6172 -1.3305 33 1 0.4890 -6.7102 -1.7585 34 1 1.2208 -6.2176 -0.1996 35 1 -0.4206 -4.6619 0.2013 36 1 -1.3273 -5.3906 -1.1572 37 1 -0.7791 -2.2529 -0.2367 38 1 0.0167 -1.5504 -1.6675 39 1 -0.5637 -2.6883 -4.4908 40 1 0.3492 -1.4389 -3.6112 41 1 -0.0139 -3.1589 -6.9367 42 1 1.0974 -2.0498 -8.9302 43 1 2.1757 -0.1478 -4.8448 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039327805.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:56 Heat of formation + Delta-G solvation = 41.833926 kcal Electronic energy + Delta-G solvation = -26205.935772 eV Core-core repulsion = 22765.012494 eV Total energy + Delta-G solvation = -3440.923278 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.25099 -38.54822 -36.97794 -34.57949 -32.79456 -31.33494 -31.09613 -30.51819 -27.76262 -27.07864 -25.56331 -23.96850 -23.27947 -21.54257 -20.92478 -19.35882 -18.62732 -18.14690 -17.31320 -17.13785 -16.20499 -15.57070 -15.21814 -15.15126 -14.42786 -14.27585 -13.71898 -13.26956 -13.19567 -12.98063 -12.78521 -12.62868 -12.55203 -12.45250 -12.10264 -11.91049 -11.61678 -11.56409 -11.34291 -11.13533 -10.88449 -10.82379 -10.71412 -10.61013 -10.39245 -10.19815 -10.04033 -9.78501 -9.37852 -9.30341 -8.57893 -8.57117 -8.17558 -8.02922 -6.76069 -5.79754 -3.19047 1.22468 1.85629 2.16309 2.83037 3.20732 3.34590 3.43465 3.45453 3.55285 4.47323 4.74408 4.92868 5.01299 5.15966 5.20764 5.35734 5.37827 5.44827 5.50545 5.57584 5.61591 5.74580 5.75061 5.83511 5.90183 5.94687 6.04588 6.08618 6.19299 6.22842 6.38116 6.45180 6.50492 6.58549 6.61374 6.68634 6.77542 6.81185 7.06168 7.32294 7.48476 7.77529 8.15889 8.36471 8.73947 9.17170 9.83669 10.34910 11.29390 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.010268 B = 0.006015 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2726.369341 B = 4654.087592 C = 6533.314329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.000 4.000 3 Si 0.898 3.102 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.241 4.241 8 H 0.066 0.934 9 N -0.591 5.591 10 C 0.148 3.852 11 C -0.157 4.157 12 C 0.141 3.859 13 H 0.079 0.921 14 C -0.126 4.126 15 C -0.119 4.119 16 C 0.109 3.891 17 H 0.052 0.948 18 C 0.179 3.821 19 N -0.600 5.600 20 C 0.550 3.450 21 O -0.552 6.552 22 C -0.080 4.080 23 C -0.080 4.080 24 C -0.116 4.116 25 C -0.220 4.220 26 S 0.079 5.921 27 C -0.188 4.188 28 H 0.252 0.748 29 H 0.043 0.957 30 H 0.044 0.956 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.053 0.947 38 H 0.068 0.932 39 H 0.096 0.904 40 H 0.111 0.889 41 H 0.136 0.864 42 H 0.160 0.840 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.723 -8.037 -8.518 12.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.197 4.197 3 Si 0.729 3.271 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.370 4.370 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.020 3.980 11 C -0.198 4.198 12 C 0.037 3.963 13 H 0.098 0.902 14 C -0.164 4.164 15 C -0.156 4.156 16 C 0.006 3.994 17 H 0.071 0.929 18 C 0.054 3.946 19 N -0.334 5.334 20 C 0.338 3.662 21 O -0.430 6.430 22 C -0.122 4.122 23 C -0.092 4.092 24 C -0.147 4.147 25 C -0.355 4.355 26 S 0.342 5.658 27 C -0.324 4.324 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.114 0.886 40 H 0.130 0.870 41 H 0.154 0.846 42 H 0.178 0.822 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -1.342 -6.914 -9.710 11.996 hybrid contribution -0.373 0.001 0.729 0.819 sum -1.715 -6.913 -8.981 11.463 Atomic orbital electron populations 1.69962 1.04921 1.25100 1.56102 1.24894 0.95418 0.97850 1.01518 0.86262 0.79292 0.84250 0.77306 1.20473 1.21670 1.21721 1.19239 0.91218 0.84252 1.42333 0.91666 1.44128 1.21734 1.01452 1.64141 1.20257 0.95894 0.88344 0.93478 1.22138 0.99300 0.99858 0.98492 1.21580 0.93148 0.88545 0.93021 0.90238 1.22610 0.96048 0.97344 1.00404 1.21844 0.97849 0.94571 1.01373 1.22206 0.87143 0.97638 0.92462 0.92925 1.21508 0.88396 0.90312 0.94351 1.49429 1.25883 1.38406 1.19708 1.19754 0.86081 0.81459 0.78858 1.90662 1.27807 1.64933 1.59601 1.20391 0.98523 0.98870 0.94448 1.18388 0.99742 0.96281 0.94791 1.19998 1.02221 1.01243 0.91213 1.25421 1.04945 1.02435 1.02704 1.84063 1.47981 1.33036 1.00674 1.25491 1.03917 1.03537 0.99436 0.93776 0.93929 0.93706 0.92700 0.92090 0.91804 0.90163 0.89374 0.91360 0.92962 0.91358 0.88614 0.87046 0.84635 0.82199 0.81768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.94 10.63 55.49 0.59 -24.35 16 2 C 0.00 0.01 5.14 -17.43 -0.09 -0.08 16 3 Si 0.90 21.55 29.57 -169.99 -5.03 16.52 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.24 -6.38 9.64 -15.06 -0.15 -6.52 16 8 H 0.07 1.76 7.85 -52.48 -0.41 1.35 16 9 N -0.59 -13.77 2.91 -173.21 -0.50 -14.27 16 10 C 0.15 2.89 5.34 -5.71 -0.03 2.86 16 11 C -0.16 -2.80 5.00 -28.33 -0.14 -2.94 16 12 C 0.14 2.33 3.77 -66.69 -0.25 2.08 16 13 H 0.08 1.35 8.02 -51.93 -0.42 0.93 16 14 C -0.13 -1.63 6.05 -25.18 -0.15 -1.79 16 15 C -0.12 -1.63 5.79 -27.15 -0.16 -1.79 16 16 C 0.11 1.84 2.24 -67.40 -0.15 1.68 16 17 H 0.05 0.80 7.72 -51.93 -0.40 0.40 16 18 C 0.18 3.83 4.52 -2.61 -0.01 3.81 16 19 N -0.60 -10.84 2.69 -155.77 -0.42 -11.26 16 20 C 0.55 10.63 7.91 -10.99 -0.09 10.55 16 21 O -0.55 -12.32 16.40 5.55 0.09 -12.23 16 22 C -0.08 -1.34 5.14 -29.04 -0.15 -1.49 16 23 C -0.08 -1.31 4.29 -106.25 -0.46 -1.76 16 24 C -0.12 -1.66 9.98 -41.21 -0.41 -2.07 16 25 C -0.22 -2.85 11.23 29.04 0.33 -2.53 16 26 S 0.08 1.09 23.34 -107.50 -2.51 -1.41 16 27 C -0.19 -3.10 10.98 29.04 0.32 -2.79 16 28 H 0.25 6.74 8.31 -40.82 -0.34 6.40 16 29 H 0.04 0.75 3.91 -51.93 -0.20 0.55 16 30 H 0.04 0.90 7.96 -51.93 -0.41 0.49 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 34 H 0.08 0.94 7.33 -51.93 -0.38 0.56 16 35 H 0.09 1.27 6.14 -51.93 -0.32 0.95 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.05 1.21 7.66 -51.93 -0.40 0.82 16 38 H 0.07 1.62 5.41 -51.93 -0.28 1.34 16 39 H 0.10 1.33 8.01 -51.93 -0.42 0.91 16 40 H 0.11 2.02 6.54 -51.93 -0.34 1.68 16 41 H 0.14 1.67 8.06 -52.48 -0.42 1.25 16 42 H 0.16 1.60 8.06 -52.49 -0.42 1.17 16 43 H 0.16 2.76 8.06 -52.49 -0.42 2.34 16 LS Contribution 345.50 15.07 5.21 5.21 Total: -1.00 -30.70 345.50 -10.24 -40.94 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -6.07 Total: 3.63 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -1.59 Total: -2.78 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: -0.33 Total: -49.88 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.09 Total: -12.23 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Atomic # 16 Polarization: 1.09 SS G_CDS: -2.51 Total: -1.41 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.70 -10.24 -40.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039327805.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.775 kcal (2) G-P(sol) polarization free energy of solvation -30.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds