Wall clock time and date at job start Tue Mar 31 2020 12:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99962 * 2 1 4 4 H 1.48501 * 109.47120 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47070 * 299.99637 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99633 * 3 2 1 7 7 C 1.38807 * 119.99678 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00090 * 191.02701 * 7 2 1 9 9 N 1.36939 * 120.00551 * 11.03019 * 7 2 1 10 10 C 1.44787 * 120.18040 * 202.57064 * 9 7 2 11 11 C 1.51517 * 112.21827 * 264.53266 * 10 9 7 12 12 C 1.51310 * 113.24633 * 285.36283 * 11 10 9 13 13 H 1.09000 * 111.31557 * 186.10204 * 12 11 10 14 14 C 1.54708 * 106.48646 * 307.66577 * 12 11 10 15 15 C 1.54238 * 104.37744 * 89.11607 * 14 12 11 16 16 C 1.50870 * 105.27047 * 11.56845 * 15 14 12 17 17 H 1.08997 * 106.52795 * 121.73422 * 16 15 14 18 18 C 1.49814 * 120.17721 * 22.54139 * 9 7 2 19 19 N 1.48665 * 109.01921 * 62.92369 * 12 11 10 20 20 C 1.34767 * 127.84423 * 96.43722 * 19 12 11 21 21 O 1.21287 * 120.00113 * 359.97438 * 20 19 12 22 22 C 1.50698 * 120.00212 * 180.02562 * 20 19 12 23 23 C 1.50698 * 109.47451 * 180.02562 * 22 20 19 24 24 C 1.38419 * 122.54349 * 89.99839 * 23 22 20 25 25 C 1.33392 * 114.92608 * 179.97438 * 24 23 22 26 26 S 1.75881 * 109.59206 * 0.02562 * 25 24 23 27 27 C 1.33392 * 122.53595 * 269.71029 * 23 22 20 28 28 H 0.97003 * 120.00165 * 0.02562 * 1 2 3 29 29 H 1.09001 * 108.93456 * 143.82124 * 10 9 7 30 30 H 1.09004 * 108.93309 * 25.23761 * 10 9 7 31 31 H 1.09003 * 108.72426 * 164.39540 * 11 10 9 32 32 H 1.08992 * 108.72895 * 46.34004 * 11 10 9 33 33 H 1.09010 * 110.45789 * 208.67743 * 14 12 11 34 34 H 1.08999 * 110.45700 * 331.22896 * 14 12 11 35 35 H 1.09003 * 110.28226 * 252.61859 * 15 14 12 36 36 H 1.09003 * 110.36583 * 130.55854 * 15 14 12 37 37 H 1.08997 * 109.54551 * 270.58135 * 18 9 7 38 38 H 1.08994 * 109.54664 * 30.85883 * 18 9 7 39 39 H 1.09002 * 109.47365 * 300.00164 * 22 20 19 40 40 H 1.08997 * 109.47416 * 60.00200 * 22 20 19 41 41 H 1.08007 * 122.54026 * 359.95687 * 24 23 22 42 42 H 1.07994 * 125.20400 * 179.97438 * 25 24 23 43 43 H 1.07995 * 125.20808 * 0.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0752 -1.2108 0.1794 9 7 1.3445 -2.3772 -0.2258 10 6 1.9027 -3.6307 0.2362 11 6 2.6920 -4.3397 -0.8455 12 6 1.8168 -4.9845 -1.8980 13 1 2.4084 -5.5738 -2.5985 14 6 0.7965 -5.8667 -1.1403 15 6 -0.3898 -4.9227 -0.8566 16 6 -0.1277 -3.6933 -1.6910 17 1 -0.9880 -3.5767 -2.3500 18 6 0.0343 -2.3727 -0.9524 19 7 1.0439 -3.9263 -2.6000 20 6 1.3414 -3.3218 -3.7672 21 8 2.3472 -3.6303 -4.3709 22 6 0.4251 -2.2618 -4.3219 23 6 0.9802 -1.7500 -5.6261 24 6 0.6558 -2.3163 -6.8468 25 6 1.2332 -1.7429 -7.9037 26 16 2.2506 -0.4112 -7.3698 27 6 1.8171 -0.7134 -5.6920 28 1 -0.4850 0.8401 -0.0004 29 1 1.0909 -4.2797 0.5648 30 1 2.5606 -3.4342 1.0828 31 1 3.3070 -5.1108 -0.3814 32 1 3.3482 -3.6172 -1.3305 33 1 0.4890 -6.7102 -1.7585 34 1 1.2208 -6.2176 -0.1996 35 1 -0.4206 -4.6619 0.2013 36 1 -1.3273 -5.3906 -1.1572 37 1 -0.7791 -2.2529 -0.2367 38 1 0.0167 -1.5504 -1.6675 39 1 -0.5637 -2.6883 -4.4908 40 1 0.3492 -1.4389 -3.6112 41 1 -0.0139 -3.1589 -6.9367 42 1 1.0974 -2.0498 -8.9302 43 1 2.1757 -0.1478 -4.8448 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039327805.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:55 Heat of formation + Delta-G solvation = 24.687541 kcal Electronic energy + Delta-G solvation = -26206.679295 eV Core-core repulsion = 22765.012494 eV Total energy + Delta-G solvation = -3441.666801 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.66346 -39.88303 -38.34318 -36.35313 -34.30325 -32.97767 -32.65509 -31.74797 -29.02859 -28.77426 -27.05629 -25.72192 -24.52473 -22.92815 -22.29130 -20.90799 -19.90712 -19.48859 -18.83331 -18.45044 -17.86892 -17.05613 -16.85877 -16.40273 -16.08340 -15.63071 -15.46464 -14.83238 -14.64340 -14.41157 -13.99736 -13.98014 -13.87566 -13.81952 -13.49059 -13.27499 -13.14594 -12.94645 -12.83840 -12.76344 -12.56006 -12.36699 -12.24988 -12.02364 -11.85024 -11.74860 -11.62724 -11.49552 -10.90065 -10.73947 -10.58495 -9.72993 -9.51953 -9.30896 -8.69065 -7.85144 -5.24547 0.06660 0.72730 1.03979 1.38051 1.42169 1.49528 1.58720 1.74489 2.20108 2.48442 3.27800 3.47363 3.66193 3.78959 3.85613 3.98948 4.03537 4.12445 4.20252 4.28646 4.32855 4.48524 4.51041 4.57872 4.65483 4.68626 4.72350 4.83566 4.95414 5.03514 5.08407 5.12540 5.14842 5.23353 5.29383 5.41022 5.47066 5.51013 5.57213 5.58652 5.71884 5.75377 6.35812 6.70629 7.17022 7.24959 7.91590 8.36908 9.20575 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.010268 B = 0.006015 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2726.369341 B = 4654.087592 C = 6533.314329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.041 4.041 3 Si 0.947 3.053 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.288 1.288 7 C -0.250 4.250 8 H 0.050 0.950 9 N -0.607 5.607 10 C 0.144 3.856 11 C -0.145 4.145 12 C 0.131 3.869 13 H 0.076 0.924 14 C -0.111 4.111 15 C -0.114 4.114 16 C 0.112 3.888 17 H 0.073 0.927 18 C 0.189 3.811 19 N -0.603 5.603 20 C 0.542 3.458 21 O -0.588 6.588 22 C -0.073 4.073 23 C -0.088 4.088 24 C -0.134 4.134 25 C -0.204 4.204 26 S 0.103 5.897 27 C -0.229 4.229 28 H 0.248 0.752 29 H 0.074 0.926 30 H 0.032 0.968 31 H 0.086 0.914 32 H 0.013 0.987 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.104 0.896 37 H 0.032 0.968 38 H 0.036 0.964 39 H 0.125 0.875 40 H 0.087 0.913 41 H 0.158 0.842 42 H 0.197 0.803 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.869 -10.418 -9.486 14.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.236 4.236 3 Si 0.777 3.223 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.215 1.215 7 C -0.380 4.380 8 H 0.068 0.932 9 N -0.330 5.330 10 C 0.018 3.982 11 C -0.186 4.186 12 C 0.028 3.972 13 H 0.095 0.905 14 C -0.149 4.149 15 C -0.151 4.151 16 C 0.009 3.991 17 H 0.091 0.909 18 C 0.064 3.936 19 N -0.335 5.335 20 C 0.332 3.668 21 O -0.470 6.470 22 C -0.115 4.115 23 C -0.101 4.101 24 C -0.164 4.164 25 C -0.339 4.339 26 S 0.366 5.634 27 C -0.365 4.365 28 H 0.058 0.942 29 H 0.091 0.909 30 H 0.051 0.949 31 H 0.104 0.896 32 H 0.032 0.968 33 H 0.109 0.891 34 H 0.118 0.882 35 H 0.101 0.899 36 H 0.122 0.878 37 H 0.050 0.950 38 H 0.054 0.946 39 H 0.143 0.857 40 H 0.106 0.894 41 H 0.176 0.824 42 H 0.214 0.786 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.491 -9.319 -10.653 14.372 hybrid contribution 0.050 0.749 1.031 1.276 sum -2.440 -8.570 -9.622 13.115 Atomic orbital electron populations 1.70081 1.05533 1.25172 1.56940 1.25396 0.96157 0.99939 1.02149 0.85499 0.78248 0.81553 0.76979 1.20581 1.21937 1.21455 1.19355 0.90878 0.86011 1.41806 0.93201 1.44362 1.22195 1.01766 1.64718 1.20442 0.96703 0.87508 0.93578 1.22017 0.98925 0.99450 0.98227 1.21791 0.94157 0.88647 0.92646 0.90542 1.22591 0.94207 0.96955 1.01166 1.21874 0.99921 0.93010 1.00321 1.22142 0.87342 0.96953 0.92636 0.90860 1.21257 0.86815 0.92264 0.93255 1.49564 1.26358 1.38305 1.19318 1.20196 0.85893 0.81562 0.79181 1.90626 1.29270 1.66194 1.60870 1.20336 0.99574 0.97404 0.94199 1.18602 0.99662 0.96302 0.95537 1.20181 1.03438 1.02335 0.90452 1.25905 1.02966 1.00902 1.04131 1.83907 1.47837 1.33370 0.98287 1.25540 1.05469 1.04591 1.00876 0.94195 0.90869 0.94917 0.89560 0.96822 0.89083 0.88191 0.89875 0.87789 0.95004 0.94579 0.85653 0.89424 0.82421 0.78577 0.83795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.28 10.63 21.65 0.23 -52.05 16 2 C -0.04 -2.27 5.14 84.86 0.44 -1.84 16 3 Si 0.95 45.79 29.57 68.60 2.03 47.82 16 4 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 5 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 6 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 7 C -0.25 -13.74 9.64 84.03 0.81 -12.93 16 8 H 0.05 2.83 7.85 -2.91 -0.02 2.81 16 9 N -0.61 -28.88 2.91 -701.93 -2.05 -30.93 16 10 C 0.14 5.56 5.34 86.21 0.46 6.02 16 11 C -0.15 -5.11 5.00 29.56 0.15 -4.96 16 12 C 0.13 4.09 3.77 44.60 0.17 4.26 16 13 H 0.08 2.47 8.02 -2.39 -0.02 2.45 16 14 C -0.11 -2.40 6.05 31.60 0.19 -2.21 16 15 C -0.11 -2.68 5.79 30.32 0.18 -2.51 16 16 C 0.11 3.61 2.24 43.32 0.10 3.71 16 17 H 0.07 2.07 7.72 -2.39 -0.02 2.05 16 18 C 0.19 8.19 4.52 85.46 0.39 8.58 16 19 N -0.60 -21.31 2.69 -765.13 -2.06 -23.37 16 20 C 0.54 21.19 7.91 87.66 0.69 21.89 16 21 O -0.59 -26.80 16.40 -3.05 -0.05 -26.85 16 22 C -0.07 -2.49 5.14 29.10 0.15 -2.34 16 23 C -0.09 -2.92 4.29 -20.92 -0.09 -3.01 16 24 C -0.13 -3.63 9.98 21.22 0.21 -3.42 16 25 C -0.20 -4.82 11.23 66.72 0.75 -4.07 16 26 S 0.10 2.77 23.34 -56.49 -1.32 1.45 16 27 C -0.23 -7.90 10.98 66.72 0.73 -7.16 16 28 H 0.25 13.67 8.31 -92.71 -0.77 12.90 16 29 H 0.07 2.40 3.91 -2.39 -0.01 2.39 16 30 H 0.03 1.32 7.96 -2.39 -0.02 1.30 16 31 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 34 H 0.10 1.83 7.33 -2.39 -0.02 1.81 16 35 H 0.08 2.09 6.14 -2.39 -0.01 2.08 16 36 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.03 1.51 7.66 -2.39 -0.02 1.49 16 38 H 0.04 1.78 5.41 -2.39 -0.01 1.77 16 39 H 0.13 3.36 8.01 -2.39 -0.02 3.34 16 40 H 0.09 3.40 6.54 -2.39 -0.02 3.38 16 41 H 0.16 3.47 8.06 -2.91 -0.02 3.45 16 42 H 0.20 3.12 8.06 -2.91 -0.02 3.10 16 43 H 0.14 5.36 8.06 -2.91 -0.02 5.33 16 Total: -1.00 -70.23 345.50 3.12 -67.11 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: 1.02 Total: 16.81 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: 5.32 Total: 0.01 kcal Atomic # 7 Polarization: -102.47 SS G_CDS: -3.88 Total: -106.35 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -0.05 Total: -26.85 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Atomic # 16 Polarization: 2.77 SS G_CDS: -1.32 Total: 1.45 kcal Total: -70.23 3.12 -67.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039327805.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.799 kcal (2) G-P(sol) polarization free energy of solvation -70.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds