Wall clock time and date at job start Tue Mar 31 2020 12:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86804 * 119.99917 * 2 1 4 4 H 1.48503 * 109.47056 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47168 * 300.00220 * 3 2 1 6 6 H 1.48500 * 109.47057 * 60.00137 * 3 2 1 7 7 C 1.38810 * 119.99870 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99920 * 190.63268 * 7 2 1 9 9 N 1.36935 * 120.00289 * 10.63304 * 7 2 1 10 10 C 1.47197 * 120.85583 * 31.39172 * 9 7 2 11 11 C 1.53193 * 108.96984 * 125.93290 * 10 9 7 12 12 C 1.53127 * 109.29069 * 55.08185 * 11 10 9 13 13 C 1.52498 * 109.60270 * 299.49335 * 12 11 10 14 14 C 1.54156 * 110.05336 * 181.73927 * 13 12 11 15 15 C 1.55048 * 102.73374 * 97.46944 * 14 13 12 16 16 N 1.48152 * 103.31654 * 36.99163 * 15 14 13 17 17 C 1.34779 * 127.02739 * 140.99799 * 16 15 14 18 18 O 1.21628 * 119.99887 * 0.74700 * 17 16 15 19 19 C 1.47191 * 119.99812 * 180.74157 * 17 16 15 20 20 C 1.44426 * 123.45574 * 168.88711 * 19 17 16 21 21 C 1.32778 * 113.08032 * 179.97438 * 20 19 17 22 22 S 1.75501 * 110.57649 * 0.02562 * 21 20 19 23 23 C 1.36009 * 123.46536 * 348.60179 * 19 17 16 24 24 C 1.47613 * 105.94727 * 320.97724 * 16 15 14 25 25 C 1.47032 * 120.67904 * 211.25637 * 9 7 2 26 26 H 0.97007 * 119.99869 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.51623 * 6.09589 * 10 9 7 28 28 H 1.08996 * 109.64429 * 245.84337 * 10 9 7 29 29 H 1.09007 * 109.50038 * 295.14005 * 11 10 9 30 30 H 1.08999 * 109.53388 * 175.04826 * 11 10 9 31 31 H 1.08993 * 109.45187 * 179.44727 * 12 11 10 32 32 H 1.08997 * 109.42500 * 59.51071 * 12 11 10 33 33 H 1.09004 * 110.75918 * 215.77821 * 14 13 12 34 34 H 1.08995 * 110.76158 * 339.15804 * 14 13 12 35 35 H 1.08998 * 110.65023 * 278.53256 * 15 14 13 36 36 H 1.09006 * 110.78731 * 155.51728 * 15 14 13 37 37 H 1.07997 * 123.46316 * 0.02562 * 20 19 17 38 38 H 1.07998 * 124.70927 * 179.97438 * 21 20 19 39 39 H 1.08000 * 124.58468 * 359.97438 * 23 19 17 40 40 H 1.09001 * 109.97370 * 265.99972 * 24 16 15 41 41 H 1.09004 * 109.97520 * 144.72856 * 24 16 15 42 42 H 1.09003 * 109.58181 * 112.99004 * 25 9 7 43 43 H 1.08998 * 109.58635 * 352.71602 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0764 -1.2103 0.1720 9 7 1.3433 -2.3778 -0.2199 10 6 0.1546 -2.4209 -1.0870 11 6 0.3648 -3.4862 -2.1676 12 6 0.6924 -4.8253 -1.5010 13 6 1.9702 -4.6890 -0.6799 14 6 2.3336 -6.0432 -0.0390 15 6 3.3868 -6.6151 -1.0226 16 7 4.1491 -5.4158 -1.4416 17 6 5.4786 -5.3294 -1.6456 18 8 6.1815 -6.3109 -1.4979 19 6 6.0797 -4.0473 -2.0472 20 6 7.5035 -3.8052 -2.0614 21 6 7.8189 -2.5781 -2.4586 22 16 6.3710 -1.6601 -2.8342 23 6 5.3518 -2.9707 -2.4484 24 6 3.1549 -4.3349 -1.5906 25 6 1.8011 -3.6278 0.4043 26 1 -0.4850 0.8401 0.0004 27 1 0.0110 -1.4478 -1.5567 28 1 -0.7237 -2.6725 -0.4925 29 1 1.1907 -3.1902 -2.8145 30 1 -0.5438 -3.5877 -2.7610 31 1 0.8328 -5.5875 -2.2673 32 1 -0.1299 -5.1153 -0.8470 33 1 2.7675 -5.8983 0.9504 34 1 1.4601 -6.6930 0.0125 35 1 2.8998 -7.0799 -1.8798 36 1 4.0391 -7.3287 -0.5191 37 1 8.2364 -4.5464 -1.7788 38 1 8.8264 -2.1975 -2.5385 39 1 4.2739 -2.9487 -2.5121 40 1 2.8228 -4.2747 -2.6270 41 1 3.5898 -3.3840 -1.2828 42 1 1.0633 -3.9640 1.1328 43 1 2.7558 -3.4592 0.9025 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040067552.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:56 Heat of formation + Delta-G solvation = 33.205384 kcal Electronic energy + Delta-G solvation = -25983.070023 eV Core-core repulsion = 22541.772584 eV Total energy + Delta-G solvation = -3441.297440 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.42705 -38.58868 -36.66078 -35.73183 -33.12776 -31.53007 -30.62014 -29.94445 -28.43648 -26.30076 -25.37617 -24.51014 -23.00832 -22.19141 -20.92394 -20.22715 -19.08754 -18.50373 -17.12438 -16.80551 -16.55853 -15.80528 -15.28703 -14.89944 -14.41019 -14.08136 -13.98167 -13.70541 -13.60800 -13.08102 -12.89532 -12.80995 -12.73356 -12.38367 -12.24216 -12.15568 -11.85194 -11.69794 -11.19128 -11.13127 -10.99105 -10.88349 -10.69998 -10.49974 -10.33751 -10.19582 -9.98134 -9.68398 -9.54475 -9.46311 -8.96170 -8.60602 -8.53627 -8.30226 -6.68762 -5.85317 -3.34030 0.89163 1.63671 2.01672 2.09201 3.11469 3.31000 3.39957 3.40895 3.49411 4.40760 4.63553 4.76593 4.91426 5.05425 5.10020 5.30753 5.31901 5.36689 5.43705 5.50079 5.58471 5.64969 5.76893 5.84582 5.88067 5.91624 5.93221 6.05867 6.09727 6.17592 6.24389 6.34548 6.39735 6.46010 6.53399 6.60942 6.72785 6.82039 6.85351 7.32506 7.63728 7.68973 7.72209 8.31432 8.39685 9.14861 9.75811 10.34802 11.22344 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.010312 B = 0.006374 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2714.509209 B = 4391.605656 C = 6514.349289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.008 3.992 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.254 4.254 8 H 0.064 0.936 9 N -0.590 5.590 10 C 0.169 3.831 11 C -0.146 4.146 12 C -0.095 4.095 13 C -0.084 4.084 14 C -0.125 4.125 15 C 0.108 3.892 16 N -0.613 5.613 17 C 0.597 3.403 18 O -0.552 6.552 19 C -0.162 4.162 20 C -0.085 4.085 21 C -0.246 4.246 22 S 0.188 5.812 23 C -0.211 4.211 24 C 0.103 3.897 25 C 0.159 3.841 26 H 0.254 0.746 27 H 0.088 0.912 28 H 0.018 0.982 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.047 0.953 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.150 0.850 38 H 0.166 0.834 39 H 0.193 0.807 40 H 0.067 0.933 41 H 0.099 0.901 42 H 0.022 0.978 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.208 -7.607 -5.703 11.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.191 4.191 3 Si 0.727 3.273 4 H -0.200 1.200 5 H -0.215 1.215 6 H -0.216 1.216 7 C -0.383 4.383 8 H 0.082 0.918 9 N -0.312 5.312 10 C 0.044 3.956 11 C -0.185 4.185 12 C -0.132 4.132 13 C -0.086 4.086 14 C -0.164 4.164 15 C -0.014 4.014 16 N -0.346 5.346 17 C 0.386 3.614 18 O -0.432 6.432 19 C -0.179 4.179 20 C -0.114 4.114 21 C -0.381 4.381 22 S 0.453 5.547 23 C -0.349 4.349 24 C -0.019 4.019 25 C 0.032 3.968 26 H 0.064 0.936 27 H 0.106 0.894 28 H 0.036 0.964 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.167 0.833 38 H 0.184 0.816 39 H 0.210 0.790 40 H 0.085 0.915 41 H 0.117 0.883 42 H 0.040 0.960 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.336 -6.461 -6.135 11.541 hybrid contribution 0.439 -0.511 0.556 0.874 sum 7.775 -6.972 -5.579 11.840 Atomic orbital electron populations 1.69981 1.05254 1.25397 1.53934 1.25142 0.95343 0.98307 1.00323 0.86298 0.79544 0.84081 0.77411 1.19982 1.21488 1.21603 1.19157 0.90740 0.83790 1.44656 0.91848 1.44098 1.31867 1.03111 1.52170 1.20838 0.88090 0.97219 0.89468 1.22265 0.99962 0.96549 0.99749 1.21401 0.96056 0.97651 0.98128 1.21633 0.94158 0.95716 0.97137 1.22765 0.98393 0.96532 0.98727 1.22452 0.93115 0.88177 0.97691 1.48754 1.05577 1.13118 1.67172 1.17207 0.80024 0.87318 0.76812 1.90746 1.60537 1.38188 1.53718 1.20177 0.93506 0.94819 1.09417 1.21054 0.93874 0.96629 0.99870 1.25505 1.02893 0.98557 1.11132 1.83250 0.94726 1.14099 1.62577 1.26738 1.06664 0.97647 1.03835 1.22704 0.88396 0.91280 0.99520 1.20892 0.97905 0.86472 0.91513 0.93614 0.89369 0.96409 0.92867 0.93117 0.93456 0.92133 0.90730 0.90124 0.91294 0.90134 0.83260 0.81604 0.79050 0.91480 0.88323 0.95982 0.92837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.88 11.05 55.49 0.61 -24.27 16 2 C 0.01 0.21 5.06 -17.43 -0.09 0.12 16 3 Si 0.90 20.68 29.57 -169.99 -5.03 15.65 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.25 -6.43 9.59 -15.06 -0.14 -6.57 16 8 H 0.06 1.60 7.85 -52.49 -0.41 1.19 16 9 N -0.59 -13.38 2.77 -172.35 -0.48 -13.86 16 10 C 0.17 3.70 5.27 -3.56 -0.02 3.68 16 11 C -0.15 -2.49 5.87 -26.57 -0.16 -2.64 16 12 C -0.09 -1.41 4.40 -26.92 -0.12 -1.52 16 13 C -0.08 -1.29 0.62 -154.05 -0.09 -1.39 16 14 C -0.13 -1.63 6.15 -25.04 -0.15 -1.79 16 15 C 0.11 1.45 7.09 -2.05 -0.01 1.43 16 16 N -0.61 -9.56 3.30 -171.18 -0.56 -10.12 16 17 C 0.60 10.27 7.85 -12.62 -0.10 10.17 16 18 O -0.55 -10.74 17.03 5.25 0.09 -10.65 16 19 C -0.16 -2.52 5.95 -104.63 -0.62 -3.15 16 20 C -0.08 -1.17 10.12 -39.02 -0.40 -1.56 16 21 C -0.25 -2.90 11.12 28.86 0.32 -2.57 16 22 S 0.19 2.38 23.02 -107.50 -2.48 -0.09 16 23 C -0.21 -3.11 9.23 29.93 0.28 -2.84 16 24 C 0.10 1.60 3.81 -3.14 -0.01 1.59 16 25 C 0.16 3.06 4.81 -3.93 -0.02 3.04 16 26 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 27 H 0.09 2.20 6.10 -51.93 -0.32 1.88 16 28 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.90 6.65 -51.93 -0.35 0.56 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 1.00 7.84 -51.93 -0.41 0.59 16 34 H 0.08 0.90 7.83 -51.93 -0.41 0.50 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.08 1.09 7.86 -51.93 -0.41 0.68 16 37 H 0.15 1.92 8.06 -52.49 -0.42 1.50 16 38 H 0.17 1.46 8.06 -52.49 -0.42 1.03 16 39 H 0.19 2.90 4.30 -52.49 -0.23 2.67 16 40 H 0.07 1.01 6.28 -51.93 -0.33 0.68 16 41 H 0.10 1.72 4.91 -51.93 -0.25 1.47 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 LS Contribution 345.84 15.07 5.21 5.21 Total: -1.00 -29.24 345.84 -10.00 -39.24 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -6.03 Total: 2.89 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -1.34 Total: -4.00 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: -0.43 Total: -48.24 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.09 Total: -10.65 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.03 Total: 15.65 kcal Atomic # 16 Polarization: 2.38 SS G_CDS: -2.48 Total: -0.09 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.24 -10.00 -39.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040067552.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.441 kcal (2) G-P(sol) polarization free energy of solvation -29.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds