Wall clock time and date at job start Tue Mar 31 2020 12:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86804 * 119.99917 * 2 1 4 4 H 1.48503 * 109.47056 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47168 * 300.00220 * 3 2 1 6 6 H 1.48500 * 109.47057 * 60.00137 * 3 2 1 7 7 C 1.38810 * 119.99870 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99920 * 190.63268 * 7 2 1 9 9 N 1.36935 * 120.00289 * 10.63304 * 7 2 1 10 10 C 1.47197 * 120.85583 * 31.39172 * 9 7 2 11 11 C 1.53193 * 108.96984 * 125.93290 * 10 9 7 12 12 C 1.53127 * 109.29069 * 55.08185 * 11 10 9 13 13 C 1.52498 * 109.60270 * 299.49335 * 12 11 10 14 14 C 1.54156 * 110.05336 * 181.73927 * 13 12 11 15 15 C 1.55048 * 102.73374 * 97.46944 * 14 13 12 16 16 N 1.48152 * 103.31654 * 36.99163 * 15 14 13 17 17 C 1.34779 * 127.02739 * 140.99799 * 16 15 14 18 18 O 1.21628 * 119.99887 * 0.74700 * 17 16 15 19 19 C 1.47191 * 119.99812 * 180.74157 * 17 16 15 20 20 C 1.44426 * 123.45574 * 168.88711 * 19 17 16 21 21 C 1.32778 * 113.08032 * 179.97438 * 20 19 17 22 22 S 1.75501 * 110.57649 * 0.02562 * 21 20 19 23 23 C 1.36009 * 123.46536 * 348.60179 * 19 17 16 24 24 C 1.47613 * 105.94727 * 320.97724 * 16 15 14 25 25 C 1.47032 * 120.67904 * 211.25637 * 9 7 2 26 26 H 0.97007 * 119.99869 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.51623 * 6.09589 * 10 9 7 28 28 H 1.08996 * 109.64429 * 245.84337 * 10 9 7 29 29 H 1.09007 * 109.50038 * 295.14005 * 11 10 9 30 30 H 1.08999 * 109.53388 * 175.04826 * 11 10 9 31 31 H 1.08993 * 109.45187 * 179.44727 * 12 11 10 32 32 H 1.08997 * 109.42500 * 59.51071 * 12 11 10 33 33 H 1.09004 * 110.75918 * 215.77821 * 14 13 12 34 34 H 1.08995 * 110.76158 * 339.15804 * 14 13 12 35 35 H 1.08998 * 110.65023 * 278.53256 * 15 14 13 36 36 H 1.09006 * 110.78731 * 155.51728 * 15 14 13 37 37 H 1.07997 * 123.46316 * 0.02562 * 20 19 17 38 38 H 1.07998 * 124.70927 * 179.97438 * 21 20 19 39 39 H 1.08000 * 124.58468 * 359.97438 * 23 19 17 40 40 H 1.09001 * 109.97370 * 265.99972 * 24 16 15 41 41 H 1.09004 * 109.97520 * 144.72856 * 24 16 15 42 42 H 1.09003 * 109.58181 * 112.99004 * 25 9 7 43 43 H 1.08998 * 109.58635 * 352.71602 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0764 -1.2103 0.1720 9 7 1.3433 -2.3778 -0.2199 10 6 0.1546 -2.4209 -1.0870 11 6 0.3648 -3.4862 -2.1676 12 6 0.6924 -4.8253 -1.5010 13 6 1.9702 -4.6890 -0.6799 14 6 2.3336 -6.0432 -0.0390 15 6 3.3868 -6.6151 -1.0226 16 7 4.1491 -5.4158 -1.4416 17 6 5.4786 -5.3294 -1.6456 18 8 6.1815 -6.3109 -1.4979 19 6 6.0797 -4.0473 -2.0472 20 6 7.5035 -3.8052 -2.0614 21 6 7.8189 -2.5781 -2.4586 22 16 6.3710 -1.6601 -2.8342 23 6 5.3518 -2.9707 -2.4484 24 6 3.1549 -4.3349 -1.5906 25 6 1.8011 -3.6278 0.4043 26 1 -0.4850 0.8401 0.0004 27 1 0.0110 -1.4478 -1.5567 28 1 -0.7237 -2.6725 -0.4925 29 1 1.1907 -3.1902 -2.8145 30 1 -0.5438 -3.5877 -2.7610 31 1 0.8328 -5.5875 -2.2673 32 1 -0.1299 -5.1153 -0.8470 33 1 2.7675 -5.8983 0.9504 34 1 1.4601 -6.6930 0.0125 35 1 2.8998 -7.0799 -1.8798 36 1 4.0391 -7.3287 -0.5191 37 1 8.2364 -4.5464 -1.7788 38 1 8.8264 -2.1975 -2.5385 39 1 4.2739 -2.9487 -2.5121 40 1 2.8228 -4.2747 -2.6270 41 1 3.5898 -3.3840 -1.2828 42 1 1.0633 -3.9640 1.1328 43 1 2.7558 -3.4592 0.9025 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040067552.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:55 Heat of formation + Delta-G solvation = 17.507125 kcal Electronic energy + Delta-G solvation = -25983.750751 eV Core-core repulsion = 22541.772584 eV Total energy + Delta-G solvation = -3441.978167 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.68847 -39.91974 -37.81319 -37.24487 -34.76600 -32.86286 -32.31115 -31.23944 -29.60054 -27.67391 -27.12981 -25.73838 -24.22771 -23.76543 -22.31142 -21.43452 -20.25345 -19.87176 -18.59036 -18.22334 -17.83759 -17.02484 -16.81968 -16.47880 -15.75519 -15.52663 -15.36343 -15.12927 -14.86497 -14.48200 -14.33272 -14.17802 -13.87741 -13.58420 -13.50151 -13.42043 -13.19472 -12.92920 -12.85972 -12.79498 -12.44677 -12.26019 -12.06502 -12.00845 -11.91737 -11.85817 -11.44300 -11.05266 -11.03692 -10.90147 -10.51464 -10.00642 -9.82240 -9.37040 -8.57133 -7.83267 -5.33484 -0.21603 0.60958 0.95857 1.01274 1.45700 1.49379 1.57798 1.92733 2.26603 2.51642 3.32820 3.42919 3.55430 3.77158 3.81235 3.89780 3.96372 4.24819 4.30709 4.32588 4.36240 4.44297 4.49703 4.60455 4.66411 4.78695 4.80250 4.84405 4.90647 4.99231 5.05700 5.06767 5.11057 5.16278 5.19151 5.30298 5.36091 5.41276 5.51753 5.61431 5.70123 5.86015 6.42776 6.44578 7.04142 7.20056 7.88820 8.42481 9.21818 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.010312 B = 0.006374 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2714.509209 B = 4391.605656 C = 6514.349289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.043 4.043 3 Si 0.952 3.048 4 H -0.263 1.263 5 H -0.289 1.289 6 H -0.297 1.297 7 C -0.251 4.251 8 H 0.061 0.939 9 N -0.603 5.603 10 C 0.176 3.824 11 C -0.135 4.135 12 C -0.088 4.088 13 C -0.077 4.077 14 C -0.115 4.115 15 C 0.106 3.894 16 N -0.613 5.613 17 C 0.590 3.410 18 O -0.583 6.583 19 C -0.180 4.180 20 C -0.106 4.106 21 C -0.226 4.226 22 S 0.210 5.790 23 C -0.225 4.225 24 C 0.111 3.889 25 C 0.161 3.839 26 H 0.248 0.752 27 H 0.053 0.947 28 H -0.006 1.006 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.109 0.891 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.154 0.846 38 H 0.201 0.799 39 H 0.185 0.815 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.017 0.983 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.138 -8.554 -6.685 13.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.239 4.239 3 Si 0.781 3.219 4 H -0.187 1.187 5 H -0.215 1.215 6 H -0.224 1.224 7 C -0.381 4.381 8 H 0.079 0.921 9 N -0.326 5.326 10 C 0.050 3.950 11 C -0.174 4.174 12 C -0.126 4.126 13 C -0.079 4.079 14 C -0.153 4.153 15 C -0.015 4.015 16 N -0.345 5.345 17 C 0.380 3.620 18 O -0.465 6.465 19 C -0.198 4.198 20 C -0.135 4.135 21 C -0.361 4.361 22 S 0.476 5.524 23 C -0.363 4.363 24 C -0.011 4.011 25 C 0.035 3.965 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.012 0.988 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.127 0.873 35 H 0.109 0.891 36 H 0.097 0.903 37 H 0.172 0.828 38 H 0.218 0.782 39 H 0.202 0.798 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.035 0.965 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 8.264 -7.431 -7.119 13.198 hybrid contribution 0.161 -0.193 0.896 0.930 sum 8.425 -7.624 -6.223 12.955 Atomic orbital electron populations 1.70134 1.06494 1.25499 1.55821 1.25772 0.95983 1.01034 1.01114 0.85422 0.79095 0.80657 0.76739 1.18704 1.21544 1.22418 1.19384 0.90840 0.84936 1.42989 0.92087 1.44275 1.31821 1.03566 1.52960 1.20650 0.87043 0.97156 0.90118 1.22097 1.00992 0.96104 0.98233 1.21377 0.95516 0.96938 0.98729 1.21479 0.94715 0.95619 0.96127 1.22730 0.99312 0.95242 0.98053 1.22638 0.92904 0.87464 0.98542 1.48827 1.05316 1.13863 1.66485 1.17512 0.80368 0.87552 0.76565 1.90714 1.61208 1.39227 1.55397 1.20306 0.94603 0.94514 1.10380 1.21162 0.93193 0.97746 1.01379 1.25877 1.04046 0.97454 1.08684 1.83165 0.94597 1.13024 1.61628 1.26720 1.06746 0.98491 1.04384 1.22572 0.88174 0.90454 0.99884 1.20942 0.96742 0.86179 0.92645 0.94250 0.92906 0.98765 0.92771 0.91226 0.90201 0.91614 0.91344 0.87279 0.89092 0.90289 0.82822 0.78205 0.79819 0.90531 0.90413 0.96542 0.94141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.03 11.05 21.65 0.24 -52.79 16 2 C -0.04 -2.31 5.06 84.86 0.43 -1.88 16 3 Si 0.95 43.03 29.57 68.60 2.03 45.05 16 4 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 5 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 6 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 7 C -0.25 -12.91 9.59 84.03 0.81 -12.10 16 8 H 0.06 3.11 7.85 -2.91 -0.02 3.09 16 9 N -0.60 -27.67 2.77 -699.18 -1.94 -29.61 16 10 C 0.18 7.78 5.27 86.31 0.45 8.23 16 11 C -0.14 -4.39 5.87 30.70 0.18 -4.21 16 12 C -0.09 -2.35 4.40 30.47 0.13 -2.21 16 13 C -0.08 -2.23 0.62 -51.88 -0.03 -2.26 16 14 C -0.11 -2.68 6.15 31.69 0.19 -2.49 16 15 C 0.11 2.57 7.09 86.76 0.61 3.19 16 16 N -0.61 -18.33 3.30 -813.73 -2.68 -21.01 16 17 C 0.59 20.03 7.85 86.59 0.68 20.71 16 18 O -0.58 -22.57 17.03 -4.12 -0.07 -22.64 16 19 C -0.18 -5.53 5.95 -19.87 -0.12 -5.65 16 20 C -0.11 -2.79 10.12 22.67 0.23 -2.57 16 21 C -0.23 -4.78 11.12 66.64 0.74 -4.04 16 22 S 0.21 4.98 23.02 -56.49 -1.30 3.68 16 23 C -0.23 -6.52 9.23 67.30 0.62 -5.90 16 24 C 0.11 3.32 3.81 86.36 0.33 3.64 16 25 C 0.16 6.14 4.81 86.16 0.41 6.56 16 26 H 0.25 13.77 8.31 -92.70 -0.77 13.00 16 27 H 0.05 2.71 6.10 -2.39 -0.01 2.69 16 28 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 29 H 0.05 1.75 6.65 -2.38 -0.02 1.74 16 30 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.07 1.71 7.84 -2.38 -0.02 1.69 16 34 H 0.11 1.99 7.83 -2.39 -0.02 1.97 16 35 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.08 1.98 7.86 -2.38 -0.02 1.96 16 37 H 0.15 3.83 8.06 -2.91 -0.02 3.81 16 38 H 0.20 2.76 8.06 -2.91 -0.02 2.74 16 39 H 0.19 5.53 4.30 -2.91 -0.01 5.52 16 40 H 0.08 2.16 6.28 -2.39 -0.01 2.14 16 41 H 0.08 2.70 4.91 -2.39 -0.01 2.69 16 42 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.04 1.62 7.93 -2.39 -0.02 1.60 16 Total: -1.00 -64.82 345.84 2.98 -61.84 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: 1.02 Total: 16.44 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: 5.68 Total: -0.97 kcal Atomic # 7 Polarization: -99.03 SS G_CDS: -4.38 Total: -103.41 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -0.07 Total: -22.64 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Atomic # 16 Polarization: 4.98 SS G_CDS: -1.30 Total: 3.68 kcal Total: -64.82 2.98 -61.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040067552.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.349 kcal (2) G-P(sol) polarization free energy of solvation -64.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds