Wall clock time and date at job start Tue Mar 31 2020 12:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 120.00299 * 2 1 4 4 H 1.48494 * 109.47221 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46718 * 299.99969 * 3 2 1 6 6 H 1.48502 * 109.47037 * 59.99422 * 3 2 1 7 7 C 1.38808 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00287 * 197.47309 * 7 2 1 9 9 N 1.36943 * 119.99970 * 17.47273 * 7 2 1 10 10 C 1.46945 * 120.54810 * 27.96626 * 9 7 2 11 11 C 1.53334 * 108.68590 * 125.67119 * 10 9 7 12 12 C 1.52108 * 109.44245 * 53.30179 * 11 10 9 13 13 C 1.54365 * 110.55316 * 177.18518 * 12 11 10 14 14 C 1.54462 * 102.87517 * 276.69836 * 13 12 11 15 15 N 1.47347 * 107.33303 * 338.50612 * 14 13 12 16 16 C 1.34782 * 125.77838 * 178.98854 * 15 14 13 17 17 O 1.21702 * 120.00426 * 179.97438 * 16 15 14 18 18 C 1.46586 * 119.99712 * 0.02562 * 16 15 14 19 19 C 1.36644 * 125.45807 * 179.72184 * 18 16 15 20 20 C 1.37473 * 113.29674 * 179.79596 * 19 18 16 21 21 C 1.33811 * 115.10179 * 0.48986 * 20 19 18 22 22 S 1.70619 * 110.95336 * 359.72800 * 21 20 19 23 23 C 1.47570 * 108.59685 * 358.99000 * 15 14 13 24 24 C 1.52103 * 111.59904 * 300.68869 * 12 11 10 25 25 C 1.46929 * 120.55385 * 207.97993 * 9 7 2 26 26 H 0.97003 * 119.99833 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.59902 * 5.90676 * 10 9 7 28 28 H 1.08998 * 109.72736 * 245.51207 * 10 9 7 29 29 H 1.09005 * 109.47750 * 293.31346 * 11 10 9 30 30 H 1.08999 * 109.48379 * 173.29904 * 11 10 9 31 31 H 1.09003 * 110.73337 * 35.04501 * 13 12 11 32 32 H 1.09004 * 110.73555 * 158.17165 * 13 12 11 33 33 H 1.08992 * 109.88093 * 97.92140 * 14 13 12 34 34 H 1.09005 * 109.87724 * 218.92297 * 14 13 12 35 35 H 1.08004 * 123.35327 * 359.97438 * 19 18 16 36 36 H 1.07997 * 122.44928 * 180.19923 * 20 19 18 37 37 H 1.08003 * 124.52788 * 179.70284 * 21 20 19 38 38 H 1.09006 * 110.37570 * 264.47183 * 23 15 14 39 39 H 1.08991 * 110.38148 * 142.23362 * 23 15 14 40 40 H 1.09005 * 109.47237 * 179.29675 * 24 12 11 41 41 H 1.09000 * 109.47429 * 299.30893 * 24 12 11 42 42 H 1.08992 * 109.59967 * 354.08835 * 25 9 7 43 43 H 1.08998 * 109.59925 * 114.56447 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0528 -1.2236 0.2814 9 7 1.3729 -2.3609 -0.3550 10 6 0.2340 -2.3323 -1.2831 11 6 0.5221 -3.2917 -2.4440 12 6 0.8755 -4.6640 -1.8910 13 6 1.1021 -5.6694 -3.0402 14 6 -0.3321 -6.1287 -3.3835 15 7 -1.1741 -5.8564 -2.2054 16 6 -2.4969 -6.0969 -2.1097 17 8 -3.0910 -5.8303 -1.0815 18 6 -3.2196 -6.6804 -3.2436 19 6 -4.5539 -6.9744 -3.2666 20 6 -4.9719 -7.5109 -4.4613 21 6 -4.0129 -7.6618 -5.3823 22 16 -2.5072 -7.1211 -4.7895 23 6 -0.3271 -5.2757 -1.1457 24 6 2.0951 -4.6051 -0.9841 25 6 1.8163 -3.6532 0.1853 26 1 -0.4850 0.8401 -0.0004 27 1 0.1016 -1.3213 -1.6684 28 1 -0.6713 -2.6474 -0.7643 29 1 1.3574 -2.9107 -3.0317 30 1 -0.3613 -3.3716 -3.0775 31 1 1.5656 -5.1790 -3.8962 32 1 1.7092 -6.5098 -2.7035 33 1 -0.7047 -5.5699 -4.2419 34 1 -0.3363 -7.1958 -3.6060 35 1 -5.2149 -6.7998 -2.4305 36 1 -5.9982 -7.7945 -4.6416 37 1 -4.1709 -8.0715 -6.3690 38 1 0.0076 -6.0530 -0.4587 39 1 -0.8724 -4.5019 -0.6054 40 1 2.3095 -5.6018 -0.5983 41 1 2.9525 -4.2427 -1.5513 42 1 2.7268 -3.5130 0.7678 43 1 1.0348 -4.0720 0.8192 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040586708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:40 Heat of formation + Delta-G solvation = 24.920386 kcal Electronic energy + Delta-G solvation = -25347.051920 eV Core-core repulsion = 21905.395216 eV Total energy + Delta-G solvation = -3441.656704 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.40292 -38.71534 -37.36806 -35.83992 -33.17371 -31.19427 -30.05315 -30.00234 -29.31398 -26.85116 -25.28818 -24.13369 -22.93138 -22.27251 -20.88832 -20.73505 -19.11769 -18.24891 -17.89824 -16.54565 -16.16026 -15.98162 -15.78042 -14.88002 -14.62796 -14.15924 -13.99015 -13.76093 -13.37067 -13.23289 -13.09204 -12.96587 -12.87051 -12.62992 -12.44210 -12.32474 -11.94309 -11.79920 -11.36860 -11.20944 -10.96421 -10.83559 -10.71312 -10.44587 -10.19650 -10.17317 -9.94892 -9.82008 -9.52769 -9.38525 -9.07740 -8.79529 -8.47367 -8.42699 -6.63637 -5.75820 -3.18529 0.39162 1.33402 1.75571 2.27537 2.98524 3.24145 3.38431 3.46431 3.48500 4.41737 4.51651 4.60859 4.77334 4.88679 4.96068 5.13247 5.28017 5.31783 5.34036 5.42787 5.43897 5.65303 5.70831 5.77774 5.86807 5.93042 5.97416 6.05264 6.08729 6.16251 6.24094 6.30718 6.32325 6.47398 6.61867 6.65138 6.74711 6.85892 6.98539 7.37897 7.54376 7.70331 7.82330 8.18314 8.47670 9.23736 9.87560 10.43993 11.32247 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.022103 B = 0.003368 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.511503 B = 8311.189021 C = 8716.025347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.002 3.998 3 Si 0.900 3.100 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.291 1.291 7 C -0.252 4.252 8 H 0.066 0.934 9 N -0.591 5.591 10 C 0.170 3.830 11 C -0.125 4.125 12 C -0.056 4.056 13 C -0.121 4.121 14 C 0.090 3.910 15 N -0.610 5.610 16 C 0.600 3.400 17 O -0.528 6.528 18 C -0.255 4.255 19 C -0.062 4.062 20 C -0.149 4.149 21 C -0.253 4.253 22 S 0.213 5.787 23 C 0.117 3.883 24 C -0.117 4.117 25 C 0.143 3.857 26 H 0.253 0.747 27 H 0.088 0.912 28 H 0.020 0.980 29 H 0.059 0.941 30 H 0.047 0.953 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.153 0.847 36 H 0.141 0.859 37 H 0.164 0.836 38 H 0.065 0.935 39 H 0.092 0.908 40 H 0.053 0.947 41 H 0.064 0.936 42 H 0.055 0.945 43 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.219 -17.373 -12.571 21.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.197 4.197 3 Si 0.730 3.270 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.218 1.218 7 C -0.382 4.382 8 H 0.083 0.917 9 N -0.314 5.314 10 C 0.045 3.955 11 C -0.164 4.164 12 C -0.057 4.057 13 C -0.159 4.159 14 C -0.035 4.035 15 N -0.343 5.343 16 C 0.388 3.612 17 O -0.406 6.406 18 C -0.375 4.375 19 C -0.095 4.095 20 C -0.180 4.180 21 C -0.390 4.390 22 S 0.481 5.519 23 C -0.005 4.005 24 C -0.156 4.156 25 C 0.016 3.984 26 H 0.063 0.937 27 H 0.106 0.894 28 H 0.038 0.962 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.171 0.829 36 H 0.159 0.841 37 H 0.182 0.818 38 H 0.083 0.917 39 H 0.111 0.889 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -2.275 -17.034 -12.631 21.328 hybrid contribution -1.271 0.675 0.299 1.470 sum -3.546 -16.359 -12.333 20.792 Atomic orbital electron populations 1.70055 1.05246 1.25370 1.53797 1.25045 0.95237 0.98403 1.00982 0.86259 0.79355 0.84117 0.77251 1.20281 1.21624 1.21770 1.19215 0.92718 0.84882 1.41390 0.91661 1.44055 1.36272 1.01408 1.49627 1.20818 0.88682 0.98344 0.87688 1.22010 1.00015 0.94320 1.00093 1.21025 0.94796 0.95417 0.94462 1.22692 0.93827 0.99469 0.99884 1.22217 0.92263 1.00323 0.88655 1.48432 1.06856 1.62361 1.16647 1.16546 0.80183 0.78379 0.86139 1.90858 1.66741 1.52941 1.30048 1.24672 0.98874 1.14557 0.99418 1.20797 0.93630 0.96439 0.98674 1.20013 1.01038 1.03904 0.93024 1.25617 0.99838 1.08454 1.05116 1.83372 1.07962 1.55507 1.05068 1.22424 0.90903 0.97579 0.89564 1.21856 0.96122 0.99357 0.98298 1.20950 0.97678 0.87057 0.92683 0.93689 0.89430 0.96216 0.92234 0.93410 0.89794 0.90545 0.90949 0.91185 0.82936 0.84084 0.81795 0.91668 0.88931 0.92818 0.91679 0.92690 0.96351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.43 11.20 55.49 0.62 -25.81 16 2 C 0.00 0.06 4.90 -17.43 -0.09 -0.03 16 3 Si 0.90 21.70 29.59 -169.99 -5.03 16.67 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 7 C -0.25 -6.87 9.57 -15.06 -0.14 -7.01 16 8 H 0.07 1.75 7.89 -52.49 -0.41 1.33 16 9 N -0.59 -14.56 2.98 -172.13 -0.51 -15.07 16 10 C 0.17 4.05 5.01 -3.63 -0.02 4.03 16 11 C -0.13 -2.31 4.83 -27.01 -0.13 -2.44 16 12 C -0.06 -0.87 0.54 -154.11 -0.08 -0.95 16 13 C -0.12 -1.40 5.89 -25.25 -0.15 -1.55 16 14 C 0.09 1.04 4.82 -2.81 -0.01 1.02 16 15 N -0.61 -9.30 3.33 -172.11 -0.57 -9.87 16 16 C 0.60 10.04 7.82 -12.89 -0.10 9.94 16 17 O -0.53 -10.83 17.11 5.19 0.09 -10.74 16 18 C -0.25 -3.41 6.38 -36.79 -0.23 -3.65 16 19 C -0.06 -0.75 10.01 -40.44 -0.40 -1.15 16 20 C -0.15 -1.41 10.15 -41.41 -0.42 -1.83 16 21 C -0.25 -2.17 10.92 29.18 0.32 -1.86 16 22 S 0.21 2.04 18.45 -107.50 -1.98 0.06 16 23 C 0.12 1.94 4.87 -2.86 -0.01 1.93 16 24 C -0.12 -1.86 4.83 -27.01 -0.13 -1.99 16 25 C 0.14 2.90 6.25 -3.63 -0.02 2.88 16 26 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 27 H 0.09 2.36 6.01 -51.93 -0.31 2.05 16 28 H 0.02 0.51 6.58 -51.93 -0.34 0.17 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.05 0.84 7.84 -51.93 -0.41 0.44 16 31 H 0.08 0.88 8.01 -51.93 -0.42 0.47 16 32 H 0.08 0.77 7.99 -51.93 -0.42 0.36 16 33 H 0.07 0.79 6.84 -51.93 -0.36 0.44 16 34 H 0.07 0.68 6.99 -51.93 -0.36 0.31 16 35 H 0.15 1.81 8.06 -52.48 -0.42 1.38 16 36 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.16 0.97 8.06 -52.48 -0.42 0.55 16 38 H 0.07 1.03 7.97 -51.93 -0.41 0.61 16 39 H 0.09 1.89 6.10 -51.93 -0.32 1.57 16 40 H 0.05 0.72 8.09 -51.93 -0.42 0.30 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.05 1.10 7.93 -51.93 -0.41 0.68 16 43 H 0.02 0.39 7.63 -51.93 -0.40 -0.01 16 LS Contribution 345.43 15.07 5.21 5.21 Total: -1.00 -32.18 345.43 -10.05 -42.23 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -6.23 Total: -0.02 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -1.63 Total: -2.66 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: -0.46 Total: -50.75 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.09 Total: -10.74 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.67 kcal Atomic # 16 Polarization: 2.04 SS G_CDS: -1.98 Total: 0.06 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.18 -10.05 -42.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040586708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.146 kcal (2) G-P(sol) polarization free energy of solvation -32.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds