Wall clock time and date at job start Tue Mar 31 2020 12:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 120.00299 * 2 1 4 4 H 1.48494 * 109.47221 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46718 * 299.99969 * 3 2 1 6 6 H 1.48502 * 109.47037 * 59.99422 * 3 2 1 7 7 C 1.38808 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00287 * 197.47309 * 7 2 1 9 9 N 1.36943 * 119.99970 * 17.47273 * 7 2 1 10 10 C 1.46945 * 120.54810 * 27.96626 * 9 7 2 11 11 C 1.53334 * 108.68590 * 125.67119 * 10 9 7 12 12 C 1.52108 * 109.44245 * 53.30179 * 11 10 9 13 13 C 1.54365 * 110.55316 * 177.18518 * 12 11 10 14 14 C 1.54462 * 102.87517 * 276.69836 * 13 12 11 15 15 N 1.47347 * 107.33303 * 338.50612 * 14 13 12 16 16 C 1.34782 * 125.77838 * 178.98854 * 15 14 13 17 17 O 1.21702 * 120.00426 * 179.97438 * 16 15 14 18 18 C 1.46586 * 119.99712 * 0.02562 * 16 15 14 19 19 C 1.36644 * 125.45807 * 179.72184 * 18 16 15 20 20 C 1.37473 * 113.29674 * 179.79596 * 19 18 16 21 21 C 1.33811 * 115.10179 * 0.48986 * 20 19 18 22 22 S 1.70619 * 110.95336 * 359.72800 * 21 20 19 23 23 C 1.47570 * 108.59685 * 358.99000 * 15 14 13 24 24 C 1.52103 * 111.59904 * 300.68869 * 12 11 10 25 25 C 1.46929 * 120.55385 * 207.97993 * 9 7 2 26 26 H 0.97003 * 119.99833 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.59902 * 5.90676 * 10 9 7 28 28 H 1.08998 * 109.72736 * 245.51207 * 10 9 7 29 29 H 1.09005 * 109.47750 * 293.31346 * 11 10 9 30 30 H 1.08999 * 109.48379 * 173.29904 * 11 10 9 31 31 H 1.09003 * 110.73337 * 35.04501 * 13 12 11 32 32 H 1.09004 * 110.73555 * 158.17165 * 13 12 11 33 33 H 1.08992 * 109.88093 * 97.92140 * 14 13 12 34 34 H 1.09005 * 109.87724 * 218.92297 * 14 13 12 35 35 H 1.08004 * 123.35327 * 359.97438 * 19 18 16 36 36 H 1.07997 * 122.44928 * 180.19923 * 20 19 18 37 37 H 1.08003 * 124.52788 * 179.70284 * 21 20 19 38 38 H 1.09006 * 110.37570 * 264.47183 * 23 15 14 39 39 H 1.08991 * 110.38148 * 142.23362 * 23 15 14 40 40 H 1.09005 * 109.47237 * 179.29675 * 24 12 11 41 41 H 1.09000 * 109.47429 * 299.30893 * 24 12 11 42 42 H 1.08992 * 109.59967 * 354.08835 * 25 9 7 43 43 H 1.08998 * 109.59925 * 114.56447 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0528 -1.2236 0.2814 9 7 1.3729 -2.3609 -0.3550 10 6 0.2340 -2.3323 -1.2831 11 6 0.5221 -3.2917 -2.4440 12 6 0.8755 -4.6640 -1.8910 13 6 1.1021 -5.6694 -3.0402 14 6 -0.3321 -6.1287 -3.3835 15 7 -1.1741 -5.8564 -2.2054 16 6 -2.4969 -6.0969 -2.1097 17 8 -3.0910 -5.8303 -1.0815 18 6 -3.2196 -6.6804 -3.2436 19 6 -4.5539 -6.9744 -3.2666 20 6 -4.9719 -7.5109 -4.4613 21 6 -4.0129 -7.6618 -5.3823 22 16 -2.5072 -7.1211 -4.7895 23 6 -0.3271 -5.2757 -1.1457 24 6 2.0951 -4.6051 -0.9841 25 6 1.8163 -3.6532 0.1853 26 1 -0.4850 0.8401 -0.0004 27 1 0.1016 -1.3213 -1.6684 28 1 -0.6713 -2.6474 -0.7643 29 1 1.3574 -2.9107 -3.0317 30 1 -0.3613 -3.3716 -3.0775 31 1 1.5656 -5.1790 -3.8962 32 1 1.7092 -6.5098 -2.7035 33 1 -0.7047 -5.5699 -4.2419 34 1 -0.3363 -7.1958 -3.6060 35 1 -5.2149 -6.7998 -2.4305 36 1 -5.9982 -7.7945 -4.6416 37 1 -4.1709 -8.0715 -6.3690 38 1 0.0076 -6.0530 -0.4587 39 1 -0.8724 -4.5019 -0.6054 40 1 2.3095 -5.6018 -0.5983 41 1 2.9525 -4.2427 -1.5513 42 1 2.7268 -3.5130 0.7678 43 1 1.0348 -4.0720 0.8192 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040586708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:39 Heat of formation + Delta-G solvation = 4.967826 kcal Electronic energy + Delta-G solvation = -25347.917128 eV Core-core repulsion = 21905.395216 eV Total energy + Delta-G solvation = -3442.521912 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.65582 -39.95509 -38.35933 -37.39435 -34.84541 -32.88469 -31.66340 -30.98174 -30.65227 -28.23566 -26.73477 -25.39251 -24.21938 -23.90150 -22.29233 -21.87177 -19.98017 -19.78004 -19.09356 -18.31441 -17.32054 -17.09615 -16.88834 -16.64496 -15.83840 -15.58053 -15.40263 -15.21543 -14.85025 -14.75570 -14.47318 -14.00691 -13.87624 -13.80560 -13.61404 -13.41408 -13.21364 -13.09496 -13.03763 -12.83469 -12.61071 -12.37253 -12.14768 -11.88338 -11.84117 -11.69207 -11.47154 -11.27092 -11.10041 -10.96411 -10.53092 -10.05902 -9.66813 -9.42993 -8.67030 -7.86691 -5.32971 -0.48834 0.50959 0.99323 1.40113 1.45365 1.46648 1.57977 1.84472 2.12638 2.51256 3.25040 3.36091 3.55558 3.70837 3.76847 3.85459 4.15326 4.17488 4.24448 4.33343 4.37338 4.52552 4.54672 4.55810 4.64810 4.72038 4.73904 4.84487 4.93284 5.02412 5.03417 5.06892 5.14136 5.25389 5.26354 5.33567 5.36604 5.39000 5.41255 5.53055 5.65099 5.76904 6.37841 6.38835 6.95944 7.14409 7.87094 8.38737 9.19308 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.022103 B = 0.003368 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.511503 B = 8311.189021 C = 8716.025347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.056 4.056 3 Si 0.968 3.032 4 H -0.261 1.261 5 H -0.291 1.291 6 H -0.296 1.296 7 C -0.258 4.258 8 H 0.072 0.928 9 N -0.608 5.608 10 C 0.180 3.820 11 C -0.109 4.109 12 C -0.054 4.054 13 C -0.106 4.106 14 C 0.083 3.917 15 N -0.611 5.611 16 C 0.590 3.410 17 O -0.589 6.589 18 C -0.303 4.303 19 C -0.066 4.066 20 C -0.161 4.161 21 C -0.235 4.235 22 S 0.268 5.732 23 C 0.119 3.881 24 C -0.103 4.103 25 C 0.135 3.865 26 H 0.247 0.753 27 H 0.048 0.952 28 H -0.020 1.020 29 H 0.068 0.932 30 H 0.051 0.949 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.082 0.918 34 H 0.100 0.900 35 H 0.139 0.861 36 H 0.166 0.834 37 H 0.201 0.799 38 H 0.075 0.925 39 H 0.040 0.960 40 H 0.090 0.910 41 H 0.075 0.925 42 H 0.057 0.943 43 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.142 -20.007 -16.064 25.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.251 4.251 3 Si 0.796 3.204 4 H -0.185 1.185 5 H -0.218 1.218 6 H -0.223 1.223 7 C -0.388 4.388 8 H 0.089 0.911 9 N -0.332 5.332 10 C 0.055 3.945 11 C -0.148 4.148 12 C -0.055 4.055 13 C -0.143 4.143 14 C -0.039 4.039 15 N -0.343 5.343 16 C 0.380 3.620 17 O -0.472 6.472 18 C -0.423 4.423 19 C -0.101 4.101 20 C -0.191 4.191 21 C -0.372 4.372 22 S 0.536 5.464 23 C -0.003 4.003 24 C -0.142 4.142 25 C 0.010 3.990 26 H 0.056 0.944 27 H 0.066 0.934 28 H -0.002 1.002 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.124 0.876 32 H 0.125 0.875 33 H 0.100 0.900 34 H 0.117 0.883 35 H 0.156 0.844 36 H 0.183 0.817 37 H 0.218 0.782 38 H 0.093 0.907 39 H 0.058 0.942 40 H 0.109 0.891 41 H 0.093 0.907 42 H 0.075 0.925 43 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges -0.137 -19.708 -16.162 25.488 hybrid contribution -1.977 1.439 1.399 2.818 sum -2.115 -18.269 -14.763 23.583 Atomic orbital electron populations 1.70247 1.06985 1.25615 1.55815 1.25862 0.95920 1.01796 1.01534 0.85193 0.78835 0.79755 0.76592 1.18521 1.21762 1.22323 1.19609 0.93099 0.86001 1.40112 0.91069 1.44335 1.36092 1.02442 1.50314 1.20529 0.87390 0.97524 0.89093 1.21762 1.00435 0.94921 0.97675 1.20939 0.93912 0.94571 0.96092 1.22695 0.94173 0.98954 0.98499 1.22535 0.91686 1.02394 0.87323 1.48522 1.06768 1.61531 1.17446 1.17147 0.80559 0.77784 0.86495 1.90804 1.68040 1.55684 1.32658 1.24497 0.99653 1.17280 1.00871 1.20980 0.93325 0.96227 0.99571 1.20167 1.02666 1.04220 0.92021 1.26111 0.98952 1.06069 1.06094 1.82976 1.07750 1.54118 1.01588 1.22243 0.91130 0.96608 0.90329 1.21720 0.96318 0.99794 0.96349 1.21154 0.96966 0.86199 0.94682 0.94382 0.93363 1.00230 0.91377 0.93036 0.87552 0.87546 0.89993 0.88253 0.84364 0.81697 0.78189 0.90694 0.94192 0.89130 0.90664 0.92464 0.97877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.39 11.20 21.65 0.24 -58.14 16 2 C -0.06 -3.23 4.90 84.86 0.42 -2.82 16 3 Si 0.97 45.78 29.59 68.60 2.03 47.81 16 4 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 6 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 7 C -0.26 -14.37 9.57 84.03 0.80 -13.56 16 8 H 0.07 3.81 7.89 -2.91 -0.02 3.79 16 9 N -0.61 -31.01 2.98 -698.50 -2.08 -33.09 16 10 C 0.18 9.11 5.01 86.41 0.43 9.54 16 11 C -0.11 -4.01 4.83 30.41 0.15 -3.87 16 12 C -0.05 -1.59 0.54 -51.92 -0.03 -1.62 16 13 C -0.11 -1.95 5.89 31.55 0.19 -1.76 16 14 C 0.08 1.65 4.82 86.71 0.42 2.06 16 15 N -0.61 -18.53 3.33 -816.64 -2.72 -21.25 16 16 C 0.59 20.63 7.82 86.42 0.68 21.31 16 17 O -0.59 -26.44 17.11 -4.35 -0.07 -26.51 16 18 C -0.30 -8.03 6.38 24.08 0.15 -7.87 16 19 C -0.07 -1.60 10.01 21.72 0.22 -1.38 16 20 C -0.16 -2.66 10.15 21.08 0.21 -2.45 16 21 C -0.23 -3.06 10.92 66.81 0.73 -2.33 16 22 S 0.27 4.20 18.45 -56.49 -1.04 3.16 16 23 C 0.12 4.06 4.87 86.56 0.42 4.48 16 24 C -0.10 -3.02 4.83 30.41 0.15 -2.87 16 25 C 0.14 5.54 6.25 86.41 0.54 6.08 16 26 H 0.25 14.90 8.31 -92.71 -0.77 14.12 16 27 H 0.05 2.78 6.01 -2.39 -0.01 2.77 16 28 H -0.02 -1.16 6.58 -2.39 -0.02 -1.18 16 29 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 30 H 0.05 1.83 7.84 -2.39 -0.02 1.81 16 31 H 0.11 1.60 8.01 -2.39 -0.02 1.58 16 32 H 0.11 1.45 7.99 -2.39 -0.02 1.43 16 33 H 0.08 1.49 6.84 -2.39 -0.02 1.48 16 34 H 0.10 1.44 6.99 -2.38 -0.02 1.42 16 35 H 0.14 3.57 8.06 -2.91 -0.02 3.54 16 36 H 0.17 1.86 8.06 -2.91 -0.02 1.84 16 37 H 0.20 1.19 8.06 -2.91 -0.02 1.16 16 38 H 0.07 2.36 7.97 -2.38 -0.02 2.34 16 39 H 0.04 1.78 6.10 -2.39 -0.01 1.77 16 40 H 0.09 2.06 8.09 -2.38 -0.02 2.04 16 41 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.06 2.27 7.93 -2.39 -0.02 2.25 16 43 H 0.00 0.14 7.63 -2.39 -0.02 0.12 16 Total: -1.00 -78.34 345.43 2.84 -75.50 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: 1.01 Total: 9.58 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: 5.48 Total: 2.94 kcal Atomic # 7 Polarization: -107.93 SS G_CDS: -4.56 Total: -112.48 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.07 Total: -26.51 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Atomic # 16 Polarization: 4.20 SS G_CDS: -1.04 Total: 3.16 kcal Total: -78.34 2.84 -75.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040586708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.466 kcal (2) G-P(sol) polarization free energy of solvation -78.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds