Wall clock time and date at job start Tue Mar 31 2020 12:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 S 1.70444 * 124.59336 * 2 1 4 4 C 1.75499 * 92.44672 * 179.97438 * 3 2 1 5 5 C 1.32767 * 110.57662 * 359.97438 * 4 3 2 6 6 C 1.36011 * 124.59197 * 179.97438 * 2 1 3 7 7 C 1.47194 * 123.45919 * 0.02562 * 6 2 1 8 8 O 1.21641 * 119.99598 * 25.07381 * 7 6 2 9 9 N 1.34772 * 119.99682 * 205.07462 * 7 6 2 10 10 C 1.47569 * 125.67975 * 5.06361 * 9 7 6 11 11 C 1.55429 * 104.92117 * 156.11368 * 10 9 7 12 12 C 1.53498 * 101.29884 * 35.61882 * 11 10 9 13 13 C 1.53469 * 111.80773 * 88.09582 * 12 11 10 14 14 C 1.54622 * 102.74819 * 154.35572 * 13 12 11 15 15 N 1.47157 * 107.34141 * 339.34457 * 14 13 12 16 16 C 1.36938 * 125.59800 * 179.10776 * 15 14 13 17 17 H 1.08001 * 119.99696 * 184.99988 * 16 15 14 18 18 C 1.38812 * 119.99983 * 5.00214 * 16 15 14 19 19 N 1.31617 * 120.00411 * 354.95078 * 18 16 15 20 20 Si 1.86799 * 119.99739 * 174.95689 * 18 16 15 21 21 H 1.48499 * 109.47487 * 94.99865 * 20 18 16 22 22 H 1.48509 * 109.47015 * 214.99905 * 20 18 16 23 23 H 1.48501 * 109.47474 * 334.99268 * 20 18 16 24 24 C 1.47754 * 108.80199 * 359.08493 * 15 14 13 25 25 C 1.47451 * 125.67252 * 185.36843 * 9 7 6 26 26 H 1.09003 * 109.47113 * 0.03273 * 1 2 3 27 27 H 1.09002 * 109.47061 * 120.02158 * 1 2 3 28 28 H 1.08993 * 109.47457 * 240.03009 * 1 2 3 29 29 H 1.08001 * 124.71359 * 179.97438 * 4 3 2 30 30 H 1.07999 * 123.46369 * 180.02562 * 5 4 3 31 31 H 1.09001 * 110.33091 * 275.09396 * 10 9 7 32 32 H 1.09007 * 110.32810 * 37.31942 * 10 9 7 33 33 H 1.08998 * 111.22831 * 277.56082 * 11 10 9 34 34 H 1.09000 * 110.97491 * 153.56652 * 11 10 9 35 35 H 1.09003 * 110.75714 * 272.66837 * 13 12 11 36 36 H 1.08999 * 110.75630 * 35.85177 * 13 12 11 37 37 H 1.09000 * 109.87227 * 98.78065 * 14 13 12 38 38 H 1.09003 * 109.87018 * 219.76680 * 14 13 12 39 39 H 0.96995 * 120.00420 * 179.97438 * 19 18 16 40 40 H 1.09000 * 110.39609 * 263.53965 * 24 15 14 41 41 H 1.08998 * 110.39296 * 141.13619 * 24 15 14 42 42 H 1.08998 * 109.99590 * 301.51310 * 25 9 7 43 43 H 1.08998 * 109.99265 * 62.80743 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4747 1.4031 0.0000 4 6 3.9606 0.4693 0.0008 5 6 3.6943 -0.8314 0.0016 6 6 2.2792 -1.1197 0.0005 7 6 1.7290 -2.4849 0.0006 8 8 0.6168 -2.6924 -0.4463 9 7 2.4575 -3.5049 0.4957 10 6 3.7691 -3.3825 1.1609 11 6 3.8841 -4.6486 2.0551 12 6 3.1814 -5.6979 1.1825 13 6 4.1560 -6.3762 0.2103 14 6 3.4847 -7.7452 -0.0462 15 7 2.5570 -7.9945 1.0685 16 6 1.7545 -9.0955 1.2067 17 1 1.0472 -9.1494 2.0211 18 6 1.8502 -10.1423 0.3001 19 7 2.6394 -10.0354 -0.7478 20 14 0.8587 -11.7027 0.5673 21 1 -0.4093 -11.6213 -0.2013 22 1 1.6447 -12.8742 0.1029 23 1 0.5527 -11.8536 2.0125 24 6 2.6339 -6.8621 2.0145 25 6 2.0796 -4.9297 0.4572 26 1 -0.3633 1.0277 -0.0006 27 1 -0.3633 -0.5142 -0.8898 28 1 -0.3634 -0.5133 0.8902 29 1 4.9537 0.8937 0.0006 30 1 4.4576 -1.5955 0.0026 31 1 4.5690 -3.3650 0.4206 32 1 3.7999 -2.4820 1.7744 33 1 3.3605 -4.5123 3.0013 34 1 4.9278 -4.9145 2.2226 35 1 4.2375 -5.8064 -0.7154 36 1 5.1356 -6.5033 0.6712 37 1 2.9346 -7.7177 -0.9869 38 1 4.2421 -8.5282 -0.0828 39 1 2.7065 -10.7670 -1.3811 40 1 3.3141 -7.0967 2.8333 41 1 1.6432 -6.6209 2.3996 42 1 1.1265 -5.0763 0.9653 43 1 2.0067 -5.2681 -0.5763 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041256842.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:13 Heat of formation + Delta-G solvation = 29.713226 kcal Electronic energy + Delta-G solvation = -24999.883637 eV Core-core repulsion = 21558.434766 eV Total energy + Delta-G solvation = -3441.448871 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.43876 -38.75933 -36.88645 -35.69886 -32.73935 -32.09227 -30.59726 -29.10501 -28.60589 -27.42411 -25.59897 -24.17250 -23.35631 -22.58294 -20.83074 -20.22716 -18.99075 -18.59021 -17.40755 -16.85654 -16.21057 -15.74567 -15.69553 -14.86065 -14.55565 -14.21657 -13.95152 -13.79248 -13.69827 -13.45340 -13.05336 -12.96712 -12.62549 -12.51232 -12.28910 -12.03689 -11.91150 -11.72317 -11.60310 -11.40141 -11.22550 -11.14405 -10.87789 -10.74486 -10.21068 -10.05483 -9.96761 -9.78881 -9.70703 -9.58509 -9.01020 -8.69239 -8.56402 -8.41718 -6.80664 -5.69560 -3.02321 0.63869 1.27945 1.66510 1.88060 3.13687 3.29216 3.42352 3.47647 3.49465 4.47399 4.50260 4.54927 4.67197 4.80572 4.95996 5.00934 5.14169 5.26298 5.33213 5.42937 5.48785 5.49127 5.54254 5.68771 5.76943 5.83446 5.87815 5.96077 5.98404 6.02367 6.06819 6.18057 6.25702 6.33798 6.37743 6.51350 6.58996 6.73972 6.80981 7.57489 7.63562 7.64549 7.84530 8.27110 8.27508 9.24036 9.84273 10.50261 11.42407 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.027625 B = 0.002900 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.336200 B = 9651.902140 C =10165.242212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.145 4.145 3 S 0.169 5.831 4 C -0.238 4.238 5 C -0.107 4.107 6 C -0.167 4.167 7 C 0.590 3.410 8 O -0.537 6.537 9 N -0.611 5.611 10 C 0.100 3.900 11 C -0.119 4.119 12 C -0.083 4.083 13 C -0.131 4.131 14 C 0.178 3.822 15 N -0.605 5.605 16 C -0.228 4.228 17 H 0.077 0.923 18 C -0.007 4.007 19 N -0.921 5.921 20 Si 0.910 3.090 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.151 3.849 25 C 0.135 3.865 26 H 0.064 0.936 27 H 0.092 0.908 28 H 0.080 0.920 29 H 0.168 0.832 30 H 0.154 0.846 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.042 0.958 38 H 0.046 0.954 39 H 0.252 0.748 40 H 0.025 0.975 41 H 0.040 0.960 42 H 0.071 0.929 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.988 23.580 3.539 24.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.265 4.265 3 S 0.434 5.566 4 C -0.373 4.373 5 C -0.136 4.136 6 C -0.183 4.183 7 C 0.378 3.622 8 O -0.415 6.415 9 N -0.344 5.344 10 C -0.023 4.023 11 C -0.157 4.157 12 C -0.085 4.085 13 C -0.169 4.169 14 C 0.053 3.947 15 N -0.332 5.332 16 C -0.356 4.356 17 H 0.095 0.905 18 C -0.204 4.204 19 N -0.568 5.568 20 Si 0.741 3.259 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.025 3.975 25 C 0.013 3.987 26 H 0.083 0.917 27 H 0.111 0.889 28 H 0.099 0.901 29 H 0.185 0.815 30 H 0.172 0.828 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.043 0.957 41 H 0.058 0.942 42 H 0.089 0.911 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.018 24.850 3.150 25.369 hybrid contribution 0.039 -2.465 0.018 2.466 sum 4.057 22.385 3.169 22.969 Atomic orbital electron populations 1.20428 0.86793 1.02126 1.04817 1.24476 1.01712 0.96793 1.03519 1.82991 0.95246 1.07540 1.70839 1.25389 1.02149 0.97153 1.12604 1.21541 0.94861 0.96478 1.00720 1.20142 0.92865 0.93591 1.11727 1.17196 0.84192 0.82900 0.77915 1.90792 1.19085 1.84321 1.47331 1.48552 1.20756 1.07304 1.57825 1.22642 0.85117 0.99195 0.95341 1.22658 1.01549 0.93570 0.97934 1.21588 0.95477 0.94878 0.96544 1.22756 0.97466 0.99107 0.97578 1.21223 0.92166 0.90124 0.91162 1.44578 1.47429 1.19497 1.21685 1.19048 1.13388 0.93043 1.10128 0.90478 1.24801 0.99808 0.98434 0.97324 1.69966 1.41561 1.31904 1.13400 0.86129 0.79127 0.83158 0.77529 1.21688 1.21695 1.20660 1.21292 0.97567 0.86502 0.92140 1.21733 0.97884 0.77526 1.01550 0.91696 0.88903 0.90122 0.81468 0.82823 0.91300 0.90634 0.90553 0.89642 0.92200 0.91995 0.94000 0.93579 0.93806 0.95748 0.94225 0.91057 0.90849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 9.02 36.01 0.32 -0.57 16 2 C -0.14 -1.65 6.33 -35.11 -0.22 -1.88 16 3 S 0.17 1.41 22.95 -107.50 -2.47 -1.06 16 4 C -0.24 -1.96 11.12 28.86 0.32 -1.64 16 5 C -0.11 -1.08 8.52 -39.02 -0.33 -1.41 16 6 C -0.17 -2.15 5.68 -104.63 -0.59 -2.74 16 7 C 0.59 9.48 7.63 -12.63 -0.10 9.38 16 8 O -0.54 -10.37 15.47 5.24 0.08 -10.29 16 9 N -0.61 -9.18 3.34 -172.10 -0.58 -9.76 16 10 C 0.10 1.13 5.08 -2.17 -0.01 1.12 16 11 C -0.12 -1.45 6.07 -25.18 -0.15 -1.61 16 12 C -0.08 -1.37 0.61 -154.08 -0.09 -1.47 16 13 C -0.13 -2.32 5.79 -25.64 -0.15 -2.47 16 14 C 0.18 4.25 5.37 -2.83 -0.02 4.24 16 15 N -0.61 -15.26 3.41 -170.56 -0.58 -15.84 16 16 C -0.23 -6.36 10.27 -15.06 -0.15 -6.51 16 17 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 18 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16 19 N -0.92 -27.17 10.33 55.49 0.57 -26.59 16 20 Si 0.91 22.32 29.56 -169.99 -5.02 17.29 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 C 0.15 3.03 6.26 -3.25 -0.02 3.01 16 25 C 0.13 2.36 6.08 -3.70 -0.02 2.34 16 26 H 0.06 0.52 8.12 -51.93 -0.42 0.10 16 27 H 0.09 1.14 7.47 -51.93 -0.39 0.75 16 28 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.17 0.92 8.06 -52.49 -0.42 0.50 16 30 H 0.15 1.34 5.41 -52.49 -0.28 1.05 16 31 H 0.07 0.69 7.02 -51.93 -0.36 0.33 16 32 H 0.08 0.73 6.87 -51.93 -0.36 0.38 16 33 H 0.08 0.90 8.09 -51.93 -0.42 0.48 16 34 H 0.09 0.91 7.76 -51.93 -0.40 0.51 16 35 H 0.06 1.00 7.94 -51.93 -0.41 0.59 16 36 H 0.06 1.00 7.80 -51.93 -0.40 0.59 16 37 H 0.04 1.12 7.54 -51.93 -0.39 0.73 16 38 H 0.05 1.22 7.36 -51.93 -0.38 0.84 16 39 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.02 0.48 8.05 -51.93 -0.42 0.06 16 41 H 0.04 0.79 7.66 -51.93 -0.40 0.40 16 42 H 0.07 1.36 7.58 -51.93 -0.39 0.97 16 43 H 0.07 1.45 7.78 -51.93 -0.40 1.05 16 LS Contribution 350.48 15.07 5.28 5.28 Total: -1.00 -32.64 350.48 -10.26 -42.90 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -6.23 Total: -1.43 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -1.31 Total: -0.50 kcal Atomic # 7 Polarization: -51.61 SS G_CDS: -0.58 Total: -52.19 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.08 Total: -10.29 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Atomic # 16 Polarization: 1.41 SS G_CDS: -2.47 Total: -1.06 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.64 -10.26 -42.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041256842.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.610 kcal (2) G-P(sol) polarization free energy of solvation -32.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds