Wall clock time and date at job start Tue Mar 31 2020 13:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33813 * 124.52112 * 2 1 4 4 C 1.37484 * 115.09838 * 179.72603 * 3 2 1 5 5 C 1.36647 * 113.29518 * 0.44996 * 4 3 2 6 6 C 1.46582 * 125.45551 * 179.83582 * 5 4 3 7 7 O 1.21700 * 119.99775 * 31.29457 * 6 5 4 8 8 N 1.34778 * 119.99921 * 211.28204 * 6 5 4 9 9 C 1.47146 * 121.21404 * 3.01644 * 8 6 5 10 10 C 1.52842 * 107.97710 * 122.68896 * 9 8 6 11 11 C 1.53095 * 110.53890 * 57.37407 * 10 9 8 12 12 H 1.08995 * 112.49661 * 70.51731 * 11 10 9 13 13 C 1.56110 * 106.34969 * 195.42083 * 11 10 9 14 14 C 1.54507 * 102.62332 * 78.36781 * 13 11 10 15 15 N 1.47430 * 107.14682 * 22.83602 * 14 13 11 16 16 C 1.36937 * 126.06043 * 181.64853 * 15 14 13 17 17 H 1.07998 * 120.00607 * 188.75204 * 16 15 14 18 18 C 1.38814 * 119.99950 * 8.74763 * 16 15 14 19 19 N 1.31623 * 120.00064 * 9.58214 * 18 16 15 20 20 Si 1.86798 * 120.00035 * 189.57118 * 18 16 15 21 21 H 1.48505 * 109.46723 * 84.97997 * 20 18 16 22 22 H 1.48504 * 109.47111 * 204.97788 * 20 18 16 23 23 H 1.48497 * 109.47472 * 324.98118 * 20 18 16 24 24 C 1.46469 * 107.88308 * 1.62614 * 15 14 13 25 25 H 1.09000 * 108.42015 * 89.23404 * 24 15 14 26 26 C 1.46751 * 121.21260 * 182.98842 * 8 6 5 27 27 S 1.70611 * 124.52206 * 179.97438 * 2 1 3 28 28 H 1.08996 * 109.47275 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47205 * 300.00693 * 1 2 3 30 30 H 1.08996 * 109.46869 * 60.00495 * 1 2 3 31 31 H 1.08000 * 122.45240 * 359.95154 * 3 2 1 32 32 H 1.08001 * 123.35090 * 180.26702 * 4 3 2 33 33 H 1.09000 * 109.76297 * 3.07521 * 9 8 6 34 34 H 1.08999 * 109.76638 * 242.30960 * 9 8 6 35 35 H 1.09003 * 109.25514 * 177.62979 * 10 9 8 36 36 H 1.08989 * 109.26016 * 297.10899 * 10 9 8 37 37 H 1.09004 * 110.78670 * 320.07926 * 13 11 10 38 38 H 1.09005 * 110.93808 * 196.72006 * 13 11 10 39 39 H 1.09000 * 109.89929 * 263.45723 * 14 13 11 40 40 H 1.08998 * 110.05043 * 142.30357 * 14 13 11 41 41 H 0.96995 * 120.00048 * 180.02562 * 19 18 16 42 42 H 1.09008 * 109.22709 * 352.85960 * 26 8 6 43 43 H 1.08999 * 109.22735 * 112.22302 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2653 1.1025 0.0000 4 6 3.6216 0.8774 0.0060 5 6 3.9493 -0.4492 0.0010 6 6 5.3123 -0.9883 0.0020 7 8 6.2081 -0.3770 0.5543 8 7 5.5735 -2.1612 -0.6086 9 6 4.5253 -2.8901 -1.3401 10 6 5.0040 -3.0875 -2.7782 11 6 6.3398 -3.8351 -2.8018 12 1 6.2373 -4.8812 -2.5135 13 6 6.9286 -3.6375 -4.2340 14 6 7.5057 -2.2058 -4.1673 15 7 7.7541 -1.9031 -2.7459 16 6 8.2355 -0.7230 -2.2453 17 1 8.5144 -0.6516 -1.2044 18 6 8.3649 0.3818 -3.0757 19 7 7.8539 0.3571 -4.2884 20 14 9.2641 1.9038 -2.4720 21 1 10.7225 1.7397 -2.6992 22 1 8.7780 3.0936 -3.2159 23 1 9.0068 2.0879 -1.0211 24 6 7.3944 -3.0883 -1.9641 25 1 8.2729 -3.7287 -1.8852 26 6 6.9138 -2.7574 -0.5686 27 16 2.4739 -1.4057 0.0006 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.8429 2.0965 -0.0008 32 1 4.3550 1.6702 0.0109 33 1 3.6019 -2.3110 -1.3354 34 1 4.3554 -3.8597 -0.8720 35 1 4.2600 -3.6633 -3.3288 36 1 5.1284 -2.1141 -3.2525 37 1 6.1437 -3.7034 -4.9875 38 1 7.7169 -4.3632 -4.4346 39 1 6.7869 -1.4966 -4.5776 40 1 8.4397 -2.1529 -4.7267 41 1 7.9447 1.1289 -4.8688 42 1 7.6066 -2.0529 -0.1081 43 1 6.8830 -3.6703 0.0263 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041891581.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:17 Heat of formation + Delta-G solvation = 33.908705 kcal Electronic energy + Delta-G solvation = -26110.450186 eV Core-core repulsion = 22669.183245 eV Total energy + Delta-G solvation = -3441.266941 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.93760 -38.34309 -37.30931 -34.95311 -32.77782 -32.11309 -31.10901 -29.37629 -28.39536 -27.03735 -24.62658 -24.06665 -23.13561 -22.58488 -20.92987 -19.97061 -18.83355 -18.11600 -17.63062 -16.52550 -15.86163 -15.56413 -15.04728 -14.76875 -14.50505 -14.19675 -14.01031 -13.88202 -13.52396 -13.10580 -13.03510 -12.83823 -12.64070 -12.30883 -12.07756 -11.89940 -11.76111 -11.56983 -11.36554 -11.24745 -10.90131 -10.83532 -10.69503 -10.57649 -10.06450 -9.84255 -9.80817 -9.66345 -9.47774 -9.39435 -8.52855 -8.50816 -8.28445 -8.06841 -6.70136 -5.57462 -2.94433 0.72105 1.53924 1.94776 2.62754 3.30055 3.50598 3.55262 3.61552 3.74701 4.62397 4.74102 4.87163 5.06992 5.11181 5.16677 5.33910 5.36607 5.42275 5.52326 5.56409 5.63771 5.70275 5.73823 5.80112 5.83716 5.98576 6.04221 6.12821 6.16610 6.26732 6.30649 6.34576 6.46558 6.51178 6.54508 6.63210 6.78059 6.99375 7.11824 7.49761 7.78126 7.88749 7.93306 8.36974 8.67096 9.31873 9.94270 10.58833 11.50754 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.012773 B = 0.005730 C = 0.004646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.561631 B = 4885.029436 C = 6025.327527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.224 4.224 3 C -0.150 4.150 4 C -0.060 4.060 5 C -0.247 4.247 6 C 0.595 3.405 7 O -0.520 6.520 8 N -0.588 5.588 9 C 0.099 3.901 10 C -0.121 4.121 11 C -0.102 4.102 12 H 0.076 0.924 13 C -0.140 4.140 14 C 0.165 3.835 15 N -0.585 5.585 16 C -0.212 4.212 17 H 0.079 0.921 18 C -0.006 4.006 19 N -0.922 5.922 20 Si 0.902 3.098 21 H -0.290 1.290 22 H -0.293 1.293 23 H -0.278 1.278 24 C 0.152 3.848 25 H 0.028 0.972 26 C 0.116 3.884 27 S 0.204 5.796 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.139 0.861 32 H 0.150 0.850 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.084 0.916 37 H 0.059 0.941 38 H 0.053 0.947 39 H 0.068 0.932 40 H 0.023 0.977 41 H 0.249 0.751 42 H 0.097 0.903 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.942 -7.723 5.999 17.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.342 4.342 3 C -0.181 4.181 4 C -0.092 4.092 5 C -0.367 4.367 6 C 0.381 3.619 7 O -0.397 6.397 8 N -0.321 5.321 9 C -0.026 4.026 10 C -0.159 4.159 11 C -0.122 4.122 12 H 0.094 0.906 13 C -0.178 4.178 14 C 0.041 3.959 15 N -0.310 5.310 16 C -0.340 4.340 17 H 0.097 0.903 18 C -0.202 4.202 19 N -0.570 5.570 20 Si 0.733 3.267 21 H -0.218 1.218 22 H -0.220 1.220 23 H -0.203 1.203 24 C 0.044 3.956 25 H 0.045 0.955 26 C -0.007 4.007 27 S 0.472 5.528 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.157 0.843 32 H 0.168 0.832 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.103 0.897 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.086 0.914 40 H 0.041 0.959 41 H 0.059 0.941 42 H 0.115 0.885 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.732 -8.682 6.239 18.203 hybrid contribution 0.735 2.510 -0.015 2.616 sum -13.997 -6.172 6.224 16.515 Atomic orbital electron populations 1.20314 0.87867 1.02703 1.02976 1.24437 1.01444 0.99093 1.09258 1.19875 0.92622 0.99413 1.06185 1.20722 0.96135 0.95310 0.97045 1.24641 0.96972 0.97888 1.17239 1.16798 0.85833 0.80259 0.78986 1.90820 1.45552 1.57783 1.45566 1.47603 1.11203 1.21325 1.51943 1.22068 0.90642 0.96319 0.93528 1.21817 0.96395 1.02566 0.95102 1.22415 0.95027 0.97579 0.97158 0.90608 1.23110 0.99276 1.00044 0.95395 1.21368 0.98617 0.90134 0.85804 1.44319 1.75176 1.10372 1.01165 1.18971 1.33627 0.86394 0.95030 0.90286 1.24708 1.01355 0.97471 0.96639 1.69927 1.49104 1.29797 1.08150 0.86250 0.79389 0.82838 0.78251 1.21792 1.21984 1.20335 1.20762 0.94138 0.90347 0.90389 0.95501 1.21416 0.83472 0.97542 0.98249 1.82976 0.93960 1.07423 1.68448 0.91582 0.90687 0.90571 0.84333 0.83220 0.90102 0.91468 0.91944 0.89730 0.92245 0.92848 0.91436 0.95868 0.94108 0.88515 0.92613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.33 36.01 0.37 -0.29 16 2 C -0.22 -2.65 6.28 -35.86 -0.23 -2.87 16 3 C -0.15 -1.99 10.00 -41.41 -0.41 -2.40 16 4 C -0.06 -0.99 10.15 -40.43 -0.41 -1.40 16 5 C -0.25 -4.29 5.83 -36.79 -0.21 -4.50 16 6 C 0.59 12.30 7.61 -12.89 -0.10 12.20 16 7 O -0.52 -12.73 16.44 5.19 0.09 -12.64 16 8 N -0.59 -10.98 2.97 -175.68 -0.52 -11.50 16 9 C 0.10 1.48 5.77 -3.77 -0.02 1.46 16 10 C -0.12 -1.94 5.04 -26.76 -0.13 -2.08 16 11 C -0.10 -1.69 3.68 -88.38 -0.33 -2.02 16 12 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 13 C -0.14 -2.53 6.33 -24.27 -0.15 -2.68 16 14 C 0.17 3.95 4.80 -2.74 -0.01 3.94 16 15 N -0.59 -14.61 3.20 -164.42 -0.53 -15.14 16 16 C -0.21 -6.00 9.58 -15.06 -0.14 -6.14 16 17 H 0.08 2.30 6.69 -52.49 -0.35 1.95 16 18 C -0.01 -0.17 5.43 -17.43 -0.09 -0.27 16 19 N -0.92 -27.59 10.61 55.49 0.59 -27.00 16 20 Si 0.90 23.60 29.56 -169.99 -5.03 18.58 16 21 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 22 H -0.29 -7.70 7.11 56.52 0.40 -7.29 16 23 H -0.28 -7.36 7.11 56.52 0.40 -6.96 16 24 C 0.15 3.05 2.97 -68.30 -0.20 2.85 16 25 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 26 C 0.12 2.22 5.69 -4.78 -0.03 2.19 16 27 S 0.20 2.58 19.17 -107.50 -2.06 0.52 16 28 H 0.07 0.46 8.11 -51.93 -0.42 0.04 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 32 H 0.15 2.57 8.06 -52.49 -0.42 2.15 16 33 H 0.08 1.15 3.59 -23.35 -0.08 1.07 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.08 1.74 6.85 -51.94 -0.36 1.38 16 37 H 0.06 0.97 7.97 -51.93 -0.41 0.56 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.07 1.82 6.36 -51.93 -0.33 1.49 16 40 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 42 H 0.10 2.15 5.60 -51.92 -0.29 1.86 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 345.61 15.07 5.21 5.21 Total: -1.00 -33.47 345.61 -10.39 -43.86 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -6.03 Total: 0.13 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -2.11 Total: -2.02 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: -0.46 Total: -53.64 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.09 Total: -12.64 kcal Atomic # 14 Polarization: 23.60 SS G_CDS: -5.03 Total: 18.58 kcal Atomic # 16 Polarization: 2.58 SS G_CDS: -2.06 Total: 0.52 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.47 -10.39 -43.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041891581.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.773 kcal (2) G-P(sol) polarization free energy of solvation -33.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds