Wall clock time and date at job start Tue Mar 31 2020 13:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33813 * 124.52112 * 2 1 4 4 C 1.37484 * 115.09838 * 179.72603 * 3 2 1 5 5 C 1.36647 * 113.29518 * 0.44996 * 4 3 2 6 6 C 1.46582 * 125.45551 * 179.83582 * 5 4 3 7 7 O 1.21700 * 119.99775 * 31.29457 * 6 5 4 8 8 N 1.34778 * 119.99921 * 211.28204 * 6 5 4 9 9 C 1.47146 * 121.21404 * 3.01644 * 8 6 5 10 10 C 1.52842 * 107.97710 * 122.68896 * 9 8 6 11 11 C 1.53095 * 110.53890 * 57.37407 * 10 9 8 12 12 H 1.08995 * 112.49661 * 70.51731 * 11 10 9 13 13 C 1.56110 * 106.34969 * 195.42083 * 11 10 9 14 14 C 1.54507 * 102.62332 * 78.36781 * 13 11 10 15 15 N 1.47430 * 107.14682 * 22.83602 * 14 13 11 16 16 C 1.36937 * 126.06043 * 181.64853 * 15 14 13 17 17 H 1.07998 * 120.00607 * 188.75204 * 16 15 14 18 18 C 1.38814 * 119.99950 * 8.74763 * 16 15 14 19 19 N 1.31623 * 120.00064 * 9.58214 * 18 16 15 20 20 Si 1.86798 * 120.00035 * 189.57118 * 18 16 15 21 21 H 1.48505 * 109.46723 * 84.97997 * 20 18 16 22 22 H 1.48504 * 109.47111 * 204.97788 * 20 18 16 23 23 H 1.48497 * 109.47472 * 324.98118 * 20 18 16 24 24 C 1.46469 * 107.88308 * 1.62614 * 15 14 13 25 25 H 1.09000 * 108.42015 * 89.23404 * 24 15 14 26 26 C 1.46751 * 121.21260 * 182.98842 * 8 6 5 27 27 S 1.70611 * 124.52206 * 179.97438 * 2 1 3 28 28 H 1.08996 * 109.47275 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47205 * 300.00693 * 1 2 3 30 30 H 1.08996 * 109.46869 * 60.00495 * 1 2 3 31 31 H 1.08000 * 122.45240 * 359.95154 * 3 2 1 32 32 H 1.08001 * 123.35090 * 180.26702 * 4 3 2 33 33 H 1.09000 * 109.76297 * 3.07521 * 9 8 6 34 34 H 1.08999 * 109.76638 * 242.30960 * 9 8 6 35 35 H 1.09003 * 109.25514 * 177.62979 * 10 9 8 36 36 H 1.08989 * 109.26016 * 297.10899 * 10 9 8 37 37 H 1.09004 * 110.78670 * 320.07926 * 13 11 10 38 38 H 1.09005 * 110.93808 * 196.72006 * 13 11 10 39 39 H 1.09000 * 109.89929 * 263.45723 * 14 13 11 40 40 H 1.08998 * 110.05043 * 142.30357 * 14 13 11 41 41 H 0.96995 * 120.00048 * 180.02562 * 19 18 16 42 42 H 1.09008 * 109.22709 * 352.85960 * 26 8 6 43 43 H 1.08999 * 109.22735 * 112.22302 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2653 1.1025 0.0000 4 6 3.6216 0.8774 0.0060 5 6 3.9493 -0.4492 0.0010 6 6 5.3123 -0.9883 0.0020 7 8 6.2081 -0.3770 0.5543 8 7 5.5735 -2.1612 -0.6086 9 6 4.5253 -2.8901 -1.3401 10 6 5.0040 -3.0875 -2.7782 11 6 6.3398 -3.8351 -2.8018 12 1 6.2373 -4.8812 -2.5135 13 6 6.9286 -3.6375 -4.2340 14 6 7.5057 -2.2058 -4.1673 15 7 7.7541 -1.9031 -2.7459 16 6 8.2355 -0.7230 -2.2453 17 1 8.5144 -0.6516 -1.2044 18 6 8.3649 0.3818 -3.0757 19 7 7.8539 0.3571 -4.2884 20 14 9.2641 1.9038 -2.4720 21 1 10.7225 1.7397 -2.6992 22 1 8.7780 3.0936 -3.2159 23 1 9.0068 2.0879 -1.0211 24 6 7.3944 -3.0883 -1.9641 25 1 8.2729 -3.7287 -1.8852 26 6 6.9138 -2.7574 -0.5686 27 16 2.4739 -1.4057 0.0006 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.8429 2.0965 -0.0008 32 1 4.3550 1.6702 0.0109 33 1 3.6019 -2.3110 -1.3354 34 1 4.3554 -3.8597 -0.8720 35 1 4.2600 -3.6633 -3.3288 36 1 5.1284 -2.1141 -3.2525 37 1 6.1437 -3.7034 -4.9875 38 1 7.7169 -4.3632 -4.4346 39 1 6.7869 -1.4966 -4.5776 40 1 8.4397 -2.1529 -4.7267 41 1 7.9447 1.1289 -4.8688 42 1 7.6066 -2.0529 -0.1081 43 1 6.8830 -3.6703 0.0263 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041891581.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:16 Heat of formation + Delta-G solvation = 12.403340 kcal Electronic energy + Delta-G solvation = -26111.382729 eV Core-core repulsion = 22669.183245 eV Total energy + Delta-G solvation = -3442.199484 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.42937 -39.79428 -38.56736 -36.59058 -34.66666 -33.23514 -32.69528 -30.94467 -30.11955 -28.20451 -26.51656 -25.52336 -24.29128 -24.01435 -22.25905 -21.76303 -20.28535 -19.40323 -18.97118 -18.48441 -17.14646 -16.95240 -16.73894 -16.44499 -15.98304 -15.79340 -15.50841 -15.10871 -14.85946 -14.49052 -14.29503 -14.11980 -13.99356 -13.73841 -13.49145 -13.21628 -13.08148 -13.01962 -12.89135 -12.71542 -12.65932 -12.53050 -12.37897 -12.08746 -11.83437 -11.72936 -11.40656 -11.26154 -11.19248 -10.89543 -10.71208 -9.74421 -9.43892 -9.31024 -8.78571 -7.81276 -5.16787 -0.44137 0.43470 0.87998 1.33260 1.35260 1.44770 1.45004 1.87998 2.33254 2.47004 3.32447 3.46657 3.69003 3.85449 3.87952 3.90273 4.10846 4.23626 4.28317 4.40046 4.44730 4.45490 4.55185 4.63889 4.69324 4.74344 4.78595 4.81694 4.86195 4.98956 5.06892 5.09563 5.13654 5.16518 5.22387 5.32597 5.42859 5.49236 5.62601 5.66551 5.68662 5.86297 6.26285 6.44783 7.13696 7.17253 7.82859 8.45992 9.24281 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.012773 B = 0.005730 C = 0.004646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.561631 B = 4885.029436 C = 6025.327527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.206 4.206 3 C -0.169 4.169 4 C -0.074 4.074 5 C -0.302 4.302 6 C 0.582 3.418 7 O -0.583 6.583 8 N -0.590 5.590 9 C 0.095 3.905 10 C -0.118 4.118 11 C -0.084 4.084 12 H 0.130 0.870 13 C -0.125 4.125 14 C 0.170 3.830 15 N -0.603 5.603 16 C -0.202 4.202 17 H 0.062 0.938 18 C -0.062 4.062 19 N -0.944 5.944 20 Si 0.950 3.050 21 H -0.282 1.282 22 H -0.292 1.292 23 H -0.289 1.289 24 C 0.138 3.862 25 H 0.035 0.965 26 C 0.117 3.883 27 S 0.281 5.719 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.159 0.841 32 H 0.122 0.878 33 H 0.088 0.912 34 H 0.115 0.885 35 H 0.107 0.893 36 H 0.030 0.970 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.029 0.971 40 H -0.016 1.016 41 H 0.242 0.758 42 H 0.052 0.948 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.627 -11.168 6.348 22.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.325 4.325 3 C -0.198 4.198 4 C -0.108 4.108 5 C -0.422 4.422 6 C 0.370 3.630 7 O -0.465 6.465 8 N -0.321 5.321 9 C -0.028 4.028 10 C -0.156 4.156 11 C -0.103 4.103 12 H 0.147 0.853 13 C -0.163 4.163 14 C 0.045 3.955 15 N -0.328 5.328 16 C -0.332 4.332 17 H 0.080 0.920 18 C -0.254 4.254 19 N -0.594 5.594 20 Si 0.781 3.219 21 H -0.209 1.209 22 H -0.219 1.219 23 H -0.215 1.215 24 C 0.032 3.968 25 H 0.052 0.948 26 C -0.006 4.006 27 S 0.549 5.451 28 H 0.104 0.896 29 H 0.111 0.889 30 H 0.108 0.892 31 H 0.177 0.823 32 H 0.140 0.860 33 H 0.105 0.895 34 H 0.132 0.868 35 H 0.125 0.875 36 H 0.049 0.951 37 H 0.100 0.900 38 H 0.090 0.910 39 H 0.047 0.953 40 H 0.002 0.998 41 H 0.051 0.949 42 H 0.070 0.930 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -18.435 -12.193 6.581 23.061 hybrid contribution 1.808 3.526 -0.077 3.963 sum -16.627 -8.667 6.504 19.846 Atomic orbital electron populations 1.20529 0.84537 1.04537 1.04486 1.25042 1.03541 0.98324 1.05633 1.19954 0.91047 1.01228 1.07584 1.20810 0.97544 0.94827 0.97590 1.24529 0.97796 0.99305 1.20577 1.17409 0.86824 0.80355 0.78380 1.90761 1.47808 1.59545 1.48352 1.47789 1.11824 1.21004 1.51468 1.22417 0.89638 0.98026 0.92732 1.21793 0.97497 1.00401 0.95895 1.22484 0.93565 0.99736 0.94538 0.85263 1.22980 1.00256 0.95680 0.97387 1.21167 0.96008 0.93611 0.84680 1.44496 1.75063 1.10647 1.02598 1.18981 1.32255 0.87913 0.94057 0.92049 1.25297 1.03143 0.99805 0.97204 1.70113 1.50643 1.29862 1.08792 0.85488 0.78923 0.80577 0.76927 1.20870 1.21867 1.21493 1.21096 0.95935 0.88753 0.91052 0.94753 1.21365 0.83267 0.98109 0.97894 1.82424 0.90098 1.05932 1.66679 0.89614 0.88886 0.89165 0.82298 0.86041 0.89483 0.86753 0.87500 0.95112 0.89966 0.91030 0.95291 0.99762 0.94894 0.92977 0.88116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.96 10.33 71.24 0.74 -0.23 16 2 C -0.21 -4.25 6.28 24.68 0.15 -4.09 16 3 C -0.17 -4.32 10.00 21.09 0.21 -4.11 16 4 C -0.07 -2.58 10.15 21.72 0.22 -2.36 16 5 C -0.30 -10.71 5.83 24.08 0.14 -10.57 16 6 C 0.58 25.17 7.61 86.42 0.66 25.83 16 7 O -0.58 -30.99 16.44 -4.35 -0.07 -31.06 16 8 N -0.59 -21.76 2.97 -827.94 -2.46 -24.22 16 9 C 0.09 2.50 5.77 86.20 0.50 2.99 16 10 C -0.12 -3.39 5.04 30.57 0.15 -3.24 16 11 C -0.08 -2.45 3.68 -9.35 -0.03 -2.48 16 12 H 0.13 2.59 8.14 -2.39 -0.02 2.58 16 13 C -0.12 -4.19 6.33 32.19 0.20 -3.99 16 14 C 0.17 8.39 4.80 86.71 0.42 8.81 16 15 N -0.60 -31.20 3.20 -674.12 -2.15 -33.35 16 16 C -0.20 -12.13 9.58 84.03 0.81 -11.33 16 17 H 0.06 3.85 6.69 -2.91 -0.02 3.83 16 18 C -0.06 -3.80 5.43 84.86 0.46 -3.34 16 19 N -0.94 -59.85 10.61 21.65 0.23 -59.62 16 20 Si 0.95 51.49 29.56 68.60 2.03 53.52 16 21 H -0.28 -14.69 7.11 99.48 0.71 -13.99 16 22 H -0.29 -15.63 7.11 99.48 0.71 -14.93 16 23 H -0.29 -15.98 7.11 99.48 0.71 -15.27 16 24 C 0.14 5.41 2.97 44.77 0.13 5.54 16 25 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 26 C 0.12 4.42 5.69 85.76 0.49 4.91 16 27 S 0.28 6.24 19.17 -56.49 -1.08 5.16 16 28 H 0.08 0.71 8.11 -2.39 -0.02 0.69 16 29 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.16 3.28 8.06 -2.91 -0.02 3.25 16 32 H 0.12 4.71 8.06 -2.91 -0.02 4.69 16 33 H 0.09 2.19 3.59 -20.56 -0.07 2.11 16 34 H 0.11 2.04 8.14 -2.39 -0.02 2.03 16 35 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.03 1.23 6.85 -2.39 -0.02 1.22 16 37 H 0.08 2.42 7.97 -2.38 -0.02 2.40 16 38 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 39 H 0.03 1.65 6.36 -2.39 -0.02 1.63 16 40 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 41 H 0.24 15.05 8.31 -92.71 -0.77 14.28 16 42 H 0.05 2.45 5.60 -2.38 -0.01 2.43 16 43 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 Total: -1.00 -83.64 345.61 2.69 -80.96 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: 0.95 Total: 6.27 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: 5.24 Total: 2.35 kcal Atomic # 7 Polarization: -112.81 SS G_CDS: -4.38 Total: -117.19 kcal Atomic # 8 Polarization: -30.99 SS G_CDS: -0.07 Total: -31.06 kcal Atomic # 14 Polarization: 51.49 SS G_CDS: 2.03 Total: 53.52 kcal Atomic # 16 Polarization: 6.24 SS G_CDS: -1.08 Total: 5.16 kcal Total: -83.64 2.69 -80.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041891581.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.360 kcal (2) G-P(sol) polarization free energy of solvation -83.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds