Wall clock time and date at job start Tue Mar 31 2020 12:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99990 * 2 1 4 4 H 1.48497 * 109.46839 * 270.00360 * 3 2 1 5 5 H 1.48494 * 109.46903 * 29.99814 * 3 2 1 6 6 H 1.48498 * 109.47203 * 150.00048 * 3 2 1 7 7 C 1.38808 * 120.00077 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00421 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99997 * 359.97438 * 7 2 1 10 10 C 1.48156 * 126.39569 * 359.97438 * 9 7 2 11 11 C 1.55307 * 107.04124 * 175.00006 * 10 9 7 12 12 C 1.53692 * 101.81406 * 337.55805 * 11 10 9 13 13 H 1.08999 * 111.10901 * 280.63164 * 12 11 10 14 14 C 1.51981 * 115.00476 * 153.46120 * 12 11 10 15 15 C 1.53887 * 107.35245 * 183.69524 * 14 12 11 16 16 N 1.46770 * 110.61675 * 51.78064 * 15 14 12 17 17 C 1.34780 * 119.71348 * 132.27798 * 16 15 14 18 18 O 1.21280 * 119.99974 * 180.02562 * 17 16 15 19 19 C 1.50699 * 119.99870 * 0.02562 * 17 16 15 20 20 C 1.50702 * 109.46728 * 180.02562 * 19 17 16 21 21 C 1.33392 * 125.20454 * 89.72115 * 20 19 17 22 22 C 1.38420 * 114.91955 * 179.85966 * 21 20 19 23 23 C 1.33388 * 114.92318 * 0.42495 * 22 21 20 24 24 S 1.75880 * 109.59441 * 359.77487 * 23 22 21 25 25 C 1.47795 * 120.53409 * 312.29211 * 16 15 14 26 26 C 1.46082 * 125.94685 * 179.15949 * 9 7 2 27 27 H 1.08996 * 109.03034 * 93.26914 * 26 9 7 28 28 H 0.96998 * 120.00344 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.92031 * 55.65120 * 10 9 7 30 30 H 1.09000 * 110.08832 * 294.44041 * 10 9 7 31 31 H 1.08996 * 110.95639 * 219.42622 * 11 10 9 32 32 H 1.09006 * 110.99009 * 95.70041 * 11 10 9 33 33 H 1.09002 * 109.89219 * 303.18193 * 14 12 11 34 34 H 1.09003 * 109.89133 * 64.21252 * 14 12 11 35 35 H 1.09001 * 109.22641 * 172.16033 * 15 14 12 36 36 H 1.08992 * 109.23521 * 291.52975 * 15 14 12 37 37 H 1.08996 * 109.47294 * 299.99987 * 19 17 16 38 38 H 1.08995 * 109.47320 * 60.00425 * 19 17 16 39 39 H 1.08000 * 122.53576 * 0.02562 * 21 20 19 40 40 H 1.08004 * 122.53767 * 180.20589 * 22 21 20 41 41 H 1.08003 * 125.20196 * 179.79491 * 23 22 21 42 42 H 1.08995 * 110.06888 * 292.04601 * 25 16 15 43 43 H 1.09001 * 110.06634 * 170.47411 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1468 -2.5531 0.0005 11 6 -0.4344 -4.0738 -0.1293 12 6 0.8676 -4.5872 -0.7644 13 1 0.8843 -4.3933 -1.8369 14 6 1.1972 -6.0409 -0.4682 15 6 2.5667 -6.3397 -1.1033 16 7 3.5590 -5.3425 -0.6847 17 6 4.7674 -5.7463 -0.2449 18 8 5.5911 -4.9268 0.1028 19 6 5.0949 -7.2161 -0.1851 20 6 6.4964 -7.3974 0.3382 21 6 6.8261 -7.5293 1.6240 22 6 8.1799 -7.6873 1.8658 23 6 8.9505 -7.6749 0.7771 24 16 7.9485 -7.4601 -0.6524 25 6 3.2437 -3.8997 -0.7413 26 6 1.9209 -3.7219 -0.0184 27 1 2.0255 -4.0782 1.0063 28 1 -0.4850 0.8400 0.0004 29 1 -0.5809 -2.0195 -0.8450 30 1 -0.5653 -2.1743 0.9330 31 1 -1.2859 -4.2548 -0.7851 32 1 -0.5954 -4.5257 0.8495 33 1 1.2457 -6.1981 0.6093 34 1 0.4371 -6.6897 -0.9036 35 1 2.8979 -7.3306 -0.7927 36 1 2.4717 -6.3175 -2.1888 37 1 4.3916 -7.7183 0.4791 38 1 5.0213 -7.6457 -1.1841 39 1 6.0921 -7.5166 2.4162 40 1 8.5821 -7.8079 2.8608 41 1 10.0253 -7.7809 0.7738 42 1 3.1493 -3.5779 -1.7783 43 1 4.0236 -3.3265 -0.2401 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041903710.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:15 Heat of formation + Delta-G solvation = 32.311892 kcal Electronic energy + Delta-G solvation = -24918.438625 eV Core-core repulsion = 21477.102441 eV Total energy + Delta-G solvation = -3441.336184 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.23095 -38.47671 -37.54546 -35.35169 -32.89955 -32.44431 -31.19304 -29.50175 -28.53459 -27.04977 -24.69287 -24.01115 -22.98326 -22.24769 -20.19402 -19.85318 -19.32761 -18.91504 -17.25660 -17.06148 -16.44134 -15.75268 -15.40801 -15.15861 -14.75953 -14.36008 -14.08775 -13.72408 -13.57689 -13.07628 -13.01393 -12.96887 -12.65133 -12.52336 -12.43612 -12.21261 -11.90880 -11.69839 -11.47315 -11.30908 -10.95263 -10.84039 -10.79060 -10.73659 -10.14516 -9.95766 -9.88102 -9.73010 -9.63709 -9.47262 -8.72555 -8.61894 -8.51553 -8.42178 -6.84602 -5.70727 -3.04351 0.89825 1.55577 1.91889 2.64718 2.76072 3.17906 3.42743 3.48451 3.50829 4.47196 4.52118 4.62544 4.84175 4.92662 4.96671 4.99307 5.13824 5.21925 5.36344 5.44255 5.49118 5.50998 5.62106 5.67444 5.75701 5.91226 6.00973 6.01680 6.05978 6.12221 6.15808 6.19223 6.38100 6.39669 6.47719 6.55478 6.70889 6.74864 7.05262 7.54318 7.56528 7.61840 7.82078 8.23797 8.33605 9.20591 9.83001 10.48977 11.41552 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.016250 B = 0.003393 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.660137 B = 8250.698687 C = 9501.943071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.006 4.006 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.228 4.228 8 H 0.079 0.921 9 N -0.593 5.593 10 C 0.179 3.821 11 C -0.138 4.138 12 C -0.112 4.112 13 H 0.076 0.924 14 C -0.120 4.120 15 C 0.107 3.893 16 N -0.607 5.607 17 C 0.510 3.490 18 O -0.529 6.529 19 C -0.070 4.070 20 C -0.153 4.153 21 C -0.130 4.130 22 C -0.132 4.132 23 C -0.217 4.217 24 S 0.104 5.896 25 C 0.117 3.883 26 C 0.155 3.845 27 H 0.024 0.976 28 H 0.252 0.748 29 H 0.055 0.945 30 H 0.038 0.962 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.111 0.889 38 H 0.102 0.898 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.162 0.838 42 H 0.069 0.931 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.400 -20.694 -1.488 22.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.203 4.203 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.356 4.356 8 H 0.097 0.903 9 N -0.318 5.318 10 C 0.055 3.945 11 C -0.176 4.176 12 C -0.132 4.132 13 H 0.094 0.906 14 C -0.159 4.159 15 C -0.016 4.016 16 N -0.341 5.341 17 C 0.296 3.704 18 O -0.405 6.405 19 C -0.112 4.112 20 C -0.271 4.271 21 C -0.160 4.160 22 C -0.162 4.162 23 C -0.353 4.353 24 S 0.367 5.633 25 C -0.005 4.005 26 C 0.047 3.953 27 H 0.041 0.959 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.129 0.871 38 H 0.120 0.880 39 H 0.156 0.844 40 H 0.156 0.844 41 H 0.179 0.821 42 H 0.087 0.913 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 9.093 -19.887 -2.836 22.050 hybrid contribution 0.081 0.865 1.518 1.749 sum 9.174 -19.022 -1.318 21.160 Atomic orbital electron populations 1.69939 1.04886 1.25052 1.57094 1.24777 0.95678 0.97635 1.02173 0.86148 0.78743 0.83522 0.77605 1.21580 1.21686 1.20586 1.19063 0.90460 0.82346 1.43774 0.90304 1.44335 1.01535 0.99200 1.86725 1.21522 0.83558 0.88459 1.00990 1.22716 0.95943 0.99687 0.99249 1.22246 0.97319 0.93391 1.00210 0.90570 1.21816 0.95361 0.97538 1.01181 1.21787 0.89319 0.91117 0.99397 1.48326 1.13359 1.07869 1.64576 1.20406 0.81989 0.90453 0.77551 1.90734 1.47383 1.54833 1.47521 1.20228 0.92315 0.95187 1.03485 1.23828 0.97508 1.08951 0.96810 1.20068 0.96590 1.03565 0.95787 1.20119 0.93033 1.03540 0.99543 1.25563 1.03295 1.10819 0.95604 1.84168 0.97473 1.71329 1.10282 1.21703 0.99147 0.78374 1.01281 1.21086 0.91006 0.87628 0.95614 0.95859 0.93778 0.92716 0.94391 0.92206 0.92565 0.91385 0.90824 0.90340 0.91572 0.87063 0.87996 0.84447 0.84395 0.82061 0.91261 0.88990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.08 10.43 55.49 0.58 -26.50 16 2 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 3 Si 0.91 22.51 29.55 -169.99 -5.02 17.48 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.23 -6.37 9.88 -15.06 -0.15 -6.52 16 8 H 0.08 2.17 7.47 -52.49 -0.39 1.78 16 9 N -0.59 -14.96 3.37 -162.48 -0.55 -15.51 16 10 C 0.18 4.27 5.46 -1.91 -0.01 4.26 16 11 C -0.14 -2.46 6.56 -25.15 -0.17 -2.62 16 12 C -0.11 -1.84 2.57 -89.51 -0.23 -2.08 16 13 H 0.08 1.30 8.13 -51.93 -0.42 0.88 16 14 C -0.12 -1.45 5.72 -26.79 -0.15 -1.60 16 15 C 0.11 1.16 6.23 -3.43 -0.02 1.14 16 16 N -0.61 -9.06 3.01 -172.60 -0.52 -9.58 16 17 C 0.51 7.79 7.67 -10.98 -0.08 7.70 16 18 O -0.53 -10.44 15.40 5.56 0.09 -10.36 16 19 C -0.07 -0.75 4.53 -29.03 -0.13 -0.88 16 20 C -0.15 -1.83 5.00 -36.00 -0.18 -2.01 16 21 C -0.13 -1.51 10.05 -41.21 -0.41 -1.92 16 22 C -0.13 -1.39 10.18 -41.21 -0.42 -1.81 16 23 C -0.22 -2.22 11.23 29.04 0.33 -1.89 16 24 S 0.10 1.17 23.33 -107.50 -2.51 -1.34 16 25 C 0.12 2.22 5.75 -3.95 -0.02 2.20 16 26 C 0.16 3.17 2.79 -67.51 -0.19 2.98 16 27 H 0.02 0.52 7.93 -51.93 -0.41 0.11 16 28 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.05 1.44 7.20 -51.93 -0.37 1.07 16 30 H 0.04 1.00 7.77 -51.93 -0.40 0.60 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.06 0.95 8.12 -51.93 -0.42 0.52 16 33 H 0.07 0.84 7.98 -51.93 -0.41 0.43 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.60 5.85 -51.93 -0.30 0.30 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.11 0.92 7.55 -51.93 -0.39 0.52 16 38 H 0.10 0.85 7.99 -51.93 -0.42 0.43 16 39 H 0.14 1.43 8.06 -52.49 -0.42 1.00 16 40 H 0.14 1.14 8.06 -52.48 -0.42 0.72 16 41 H 0.16 1.24 8.06 -52.48 -0.42 0.81 16 42 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.09 2.00 6.80 -51.93 -0.35 1.64 16 LS Contribution 353.37 15.07 5.33 5.33 Total: -1.00 -33.19 353.37 -10.95 -44.14 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -6.40 Total: -0.34 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -1.94 Total: -3.32 kcal Atomic # 7 Polarization: -51.10 SS G_CDS: -0.49 Total: -51.59 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.09 Total: -10.36 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -2.51 Total: -1.34 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.19 -10.95 -44.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041903710.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.450 kcal (2) G-P(sol) polarization free energy of solvation -33.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds