Wall clock time and date at job start Tue Mar 31 2020 12:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99990 * 2 1 4 4 H 1.48497 * 109.46839 * 270.00360 * 3 2 1 5 5 H 1.48494 * 109.46903 * 29.99814 * 3 2 1 6 6 H 1.48498 * 109.47203 * 150.00048 * 3 2 1 7 7 C 1.38808 * 120.00077 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00421 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99997 * 359.97438 * 7 2 1 10 10 C 1.48156 * 126.39569 * 359.97438 * 9 7 2 11 11 C 1.55307 * 107.04124 * 175.00006 * 10 9 7 12 12 C 1.53692 * 101.81406 * 337.55805 * 11 10 9 13 13 H 1.08999 * 111.10901 * 280.63164 * 12 11 10 14 14 C 1.51981 * 115.00476 * 153.46120 * 12 11 10 15 15 C 1.53887 * 107.35245 * 183.69524 * 14 12 11 16 16 N 1.46770 * 110.61675 * 51.78064 * 15 14 12 17 17 C 1.34780 * 119.71348 * 132.27798 * 16 15 14 18 18 O 1.21280 * 119.99974 * 180.02562 * 17 16 15 19 19 C 1.50699 * 119.99870 * 0.02562 * 17 16 15 20 20 C 1.50702 * 109.46728 * 180.02562 * 19 17 16 21 21 C 1.33392 * 125.20454 * 89.72115 * 20 19 17 22 22 C 1.38420 * 114.91955 * 179.85966 * 21 20 19 23 23 C 1.33388 * 114.92318 * 0.42495 * 22 21 20 24 24 S 1.75880 * 109.59441 * 359.77487 * 23 22 21 25 25 C 1.47795 * 120.53409 * 312.29211 * 16 15 14 26 26 C 1.46082 * 125.94685 * 179.15949 * 9 7 2 27 27 H 1.08996 * 109.03034 * 93.26914 * 26 9 7 28 28 H 0.96998 * 120.00344 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.92031 * 55.65120 * 10 9 7 30 30 H 1.09000 * 110.08832 * 294.44041 * 10 9 7 31 31 H 1.08996 * 110.95639 * 219.42622 * 11 10 9 32 32 H 1.09006 * 110.99009 * 95.70041 * 11 10 9 33 33 H 1.09002 * 109.89219 * 303.18193 * 14 12 11 34 34 H 1.09003 * 109.89133 * 64.21252 * 14 12 11 35 35 H 1.09001 * 109.22641 * 172.16033 * 15 14 12 36 36 H 1.08992 * 109.23521 * 291.52975 * 15 14 12 37 37 H 1.08996 * 109.47294 * 299.99987 * 19 17 16 38 38 H 1.08995 * 109.47320 * 60.00425 * 19 17 16 39 39 H 1.08000 * 122.53576 * 0.02562 * 21 20 19 40 40 H 1.08004 * 122.53767 * 180.20589 * 22 21 20 41 41 H 1.08003 * 125.20196 * 179.79491 * 23 22 21 42 42 H 1.08995 * 110.06888 * 292.04601 * 25 16 15 43 43 H 1.09001 * 110.06634 * 170.47411 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1468 -2.5531 0.0005 11 6 -0.4344 -4.0738 -0.1293 12 6 0.8676 -4.5872 -0.7644 13 1 0.8843 -4.3933 -1.8369 14 6 1.1972 -6.0409 -0.4682 15 6 2.5667 -6.3397 -1.1033 16 7 3.5590 -5.3425 -0.6847 17 6 4.7674 -5.7463 -0.2449 18 8 5.5911 -4.9268 0.1028 19 6 5.0949 -7.2161 -0.1851 20 6 6.4964 -7.3974 0.3382 21 6 6.8261 -7.5293 1.6240 22 6 8.1799 -7.6873 1.8658 23 6 8.9505 -7.6749 0.7771 24 16 7.9485 -7.4601 -0.6524 25 6 3.2437 -3.8997 -0.7413 26 6 1.9209 -3.7219 -0.0184 27 1 2.0255 -4.0782 1.0063 28 1 -0.4850 0.8400 0.0004 29 1 -0.5809 -2.0195 -0.8450 30 1 -0.5653 -2.1743 0.9330 31 1 -1.2859 -4.2548 -0.7851 32 1 -0.5954 -4.5257 0.8495 33 1 1.2457 -6.1981 0.6093 34 1 0.4371 -6.6897 -0.9036 35 1 2.8979 -7.3306 -0.7927 36 1 2.4717 -6.3175 -2.1888 37 1 4.3916 -7.7183 0.4791 38 1 5.0213 -7.6457 -1.1841 39 1 6.0921 -7.5166 2.4162 40 1 8.5821 -7.8079 2.8608 41 1 10.0253 -7.7809 0.7738 42 1 3.1493 -3.5779 -1.7783 43 1 4.0236 -3.3265 -0.2401 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041903710.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:14 Heat of formation + Delta-G solvation = 12.087495 kcal Electronic energy + Delta-G solvation = -24919.315621 eV Core-core repulsion = 21477.102441 eV Total energy + Delta-G solvation = -3442.213180 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.48141 -39.81161 -38.48187 -36.80654 -34.66411 -33.41959 -32.77201 -30.92708 -30.16382 -28.00937 -26.52607 -25.33736 -23.98023 -23.50622 -21.80942 -21.36021 -20.32486 -19.96812 -18.70296 -18.19566 -17.86450 -16.88595 -16.79698 -16.39943 -16.21903 -15.79381 -15.63792 -15.19178 -14.85618 -14.34720 -14.22513 -13.91014 -13.79734 -13.66645 -13.52108 -13.47405 -13.25273 -13.10422 -13.02955 -12.76273 -12.50500 -12.43937 -12.11461 -11.99000 -11.78271 -11.65472 -11.51319 -11.33629 -11.01603 -10.89844 -10.74690 -9.67291 -9.56155 -9.34241 -8.91918 -7.88352 -5.22936 0.07077 0.75741 1.11296 1.41539 1.42584 1.51702 1.62038 1.77158 2.07833 2.47583 3.29649 3.45675 3.60401 3.71050 3.88868 3.97144 4.01386 4.21407 4.26927 4.29602 4.31501 4.35051 4.49444 4.58229 4.63253 4.70608 4.74989 4.76925 4.86249 4.93083 4.95453 5.14055 5.17811 5.21971 5.25909 5.37975 5.39913 5.51089 5.60392 5.62096 5.66092 5.77761 6.17689 6.44079 7.06938 7.17773 7.75105 8.41049 9.22379 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.016250 B = 0.003393 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.660137 B = 8250.698687 C = 9501.943071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.061 4.061 3 Si 0.970 3.030 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.238 4.238 8 H 0.072 0.928 9 N -0.615 5.615 10 C 0.181 3.819 11 C -0.122 4.122 12 C -0.096 4.096 13 H 0.074 0.926 14 C -0.112 4.112 15 C 0.099 3.901 16 N -0.605 5.605 17 C 0.504 3.496 18 O -0.585 6.585 19 C -0.060 4.060 20 C -0.172 4.172 21 C -0.141 4.141 22 C -0.145 4.145 23 C -0.217 4.217 24 S 0.084 5.916 25 C 0.130 3.870 26 C 0.147 3.853 27 H 0.008 0.992 28 H 0.247 0.753 29 H 0.021 0.979 30 H -0.001 1.001 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.115 0.885 35 H 0.125 0.875 36 H 0.084 0.916 37 H 0.145 0.855 38 H 0.133 0.867 39 H 0.146 0.854 40 H 0.158 0.842 41 H 0.185 0.815 42 H 0.062 0.938 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.590 -24.134 -2.031 25.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.255 4.255 3 Si 0.799 3.201 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.202 1.202 7 C -0.367 4.367 8 H 0.090 0.910 9 N -0.341 5.341 10 C 0.057 3.943 11 C -0.160 4.160 12 C -0.116 4.116 13 H 0.092 0.908 14 C -0.150 4.150 15 C -0.021 4.021 16 N -0.338 5.338 17 C 0.293 3.707 18 O -0.464 6.464 19 C -0.101 4.101 20 C -0.290 4.290 21 C -0.172 4.172 22 C -0.175 4.175 23 C -0.352 4.352 24 S 0.348 5.652 25 C 0.006 3.994 26 C 0.039 3.961 27 H 0.026 0.974 28 H 0.057 0.943 29 H 0.039 0.961 30 H 0.017 0.983 31 H 0.105 0.895 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.133 0.867 35 H 0.143 0.857 36 H 0.103 0.897 37 H 0.163 0.837 38 H 0.151 0.849 39 H 0.164 0.836 40 H 0.176 0.824 41 H 0.202 0.798 42 H 0.080 0.920 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.277 -23.394 -3.394 25.394 hybrid contribution 0.077 1.940 1.740 2.607 sum 9.354 -21.454 -1.654 23.463 Atomic orbital electron populations 1.70143 1.06014 1.25236 1.58285 1.25537 0.96570 1.00634 1.02716 0.85199 0.77556 0.79721 0.77640 1.20975 1.21650 1.20218 1.19302 0.90527 0.83990 1.42889 0.91004 1.44617 1.02529 1.00396 1.86534 1.21344 0.82713 0.92719 0.97537 1.22592 0.97723 0.94672 1.00969 1.22188 0.94314 0.95859 0.99196 0.90801 1.21828 0.97094 0.94258 1.01796 1.22199 0.87650 0.91736 1.00558 1.48400 1.14536 1.06505 1.64391 1.21318 0.81133 0.92246 0.76021 1.90711 1.49082 1.56782 1.49873 1.20312 0.92320 0.91377 1.06075 1.24074 0.98198 1.09621 0.97074 1.20374 0.97406 1.03276 0.96098 1.20421 0.92877 1.03531 1.00680 1.25905 1.04416 1.09970 0.94899 1.84185 0.98169 1.71606 1.11263 1.21216 0.97004 0.81351 0.99863 1.21239 0.93206 0.86101 0.95530 0.97426 0.94334 0.96090 0.98282 0.89513 0.91091 0.91338 0.86715 0.85748 0.89746 0.83734 0.84892 0.83617 0.82420 0.79819 0.92014 0.92954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.12 10.43 21.65 0.23 -57.90 16 2 C -0.06 -3.61 5.49 84.86 0.47 -3.15 16 3 Si 0.97 47.87 29.55 68.60 2.03 49.90 16 4 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 5 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 6 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 7 C -0.24 -13.90 9.88 84.03 0.83 -13.07 16 8 H 0.07 4.18 7.47 -2.91 -0.02 4.16 16 9 N -0.62 -32.33 3.37 -667.96 -2.25 -34.58 16 10 C 0.18 8.97 5.46 86.85 0.47 9.44 16 11 C -0.12 -4.14 6.56 31.62 0.21 -3.93 16 12 C -0.10 -2.95 2.57 -10.08 -0.03 -2.98 16 13 H 0.07 2.34 8.13 -2.39 -0.02 2.32 16 14 C -0.11 -2.14 5.72 30.56 0.17 -1.96 16 15 C 0.10 1.68 6.23 86.63 0.54 2.22 16 16 N -0.61 -16.93 3.01 -818.38 -2.47 -19.40 16 17 C 0.50 14.64 7.67 87.66 0.67 15.31 16 18 O -0.58 -23.48 15.40 -3.03 -0.05 -23.53 16 19 C -0.06 -1.06 4.53 29.10 0.13 -0.93 16 20 C -0.17 -3.77 5.00 24.59 0.12 -3.64 16 21 C -0.14 -3.03 10.05 21.22 0.21 -2.81 16 22 C -0.14 -2.80 10.18 21.22 0.22 -2.59 16 23 C -0.22 -4.07 11.23 66.72 0.75 -3.32 16 24 S 0.08 1.78 23.33 -56.49 -1.32 0.46 16 25 C 0.13 5.02 5.75 85.73 0.49 5.51 16 26 C 0.15 6.06 2.79 45.49 0.13 6.18 16 27 H 0.01 0.36 7.93 -2.39 -0.02 0.35 16 28 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 29 H 0.02 1.15 7.20 -2.39 -0.02 1.14 16 30 H 0.00 -0.06 7.77 -2.39 -0.02 -0.08 16 31 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 32 H 0.07 2.23 8.12 -2.38 -0.02 2.21 16 33 H 0.07 1.37 7.98 -2.39 -0.02 1.35 16 34 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.12 1.05 5.85 -2.39 -0.01 1.04 16 36 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.15 1.61 7.55 -2.39 -0.02 1.59 16 38 H 0.13 1.56 7.99 -2.39 -0.02 1.54 16 39 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 40 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 41 H 0.18 2.43 8.06 -2.91 -0.02 2.41 16 42 H 0.06 2.43 8.14 -2.39 -0.02 2.42 16 43 H 0.05 2.42 6.80 -2.39 -0.02 2.40 16 Total: -1.00 -79.46 353.37 2.57 -76.90 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: 1.00 Total: 7.86 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: 5.39 Total: 0.28 kcal Atomic # 7 Polarization: -107.38 SS G_CDS: -4.49 Total: -111.87 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.05 Total: -23.53 kcal Atomic # 14 Polarization: 47.87 SS G_CDS: 2.03 Total: 49.90 kcal Atomic # 16 Polarization: 1.78 SS G_CDS: -1.32 Total: 0.46 kcal Total: -79.46 2.57 -76.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041903710.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.985 kcal (2) G-P(sol) polarization free energy of solvation -79.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds