Wall clock time and date at job start Tue Mar 31 2020 13:00:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50695 * 1
3 3 C 1.32768 * 124.70978 * 2 1
4 4 C 1.44426 * 113.08158 * 180.02562 * 3 2 1
5 5 C 1.47199 * 123.46167 * 179.97438 * 4 3 2
6 6 O 1.21630 * 119.99789 * 135.06884 * 5 4 3
7 7 N 1.34775 * 119.99913 * 315.07632 * 5 4 3
8 8 C 1.46595 * 119.75645 * 3.24830 * 7 5 4
9 9 C 1.53500 * 110.93318 * 227.68274 * 8 7 5
10 10 C 1.51975 * 107.36902 * 308.44616 * 9 8 7
11 11 H 1.08996 * 111.57335 * 302.99611 * 10 9 8
12 12 C 1.53707 * 114.99443 * 175.28856 * 10 9 8
13 13 C 1.55299 * 101.81360 * 206.55071 * 12 10 9
14 14 N 1.48153 * 107.04435 * 22.44122 * 13 12 10
15 15 C 1.36938 * 126.39828 * 184.97945 * 14 13 12
16 16 H 1.08005 * 119.99998 * 180.02562 * 15 14 13
17 17 C 1.38809 * 119.99971 * 0.02562 * 15 14 13
18 18 N 1.31619 * 120.00047 * 0.02562 * 17 15 14
19 19 Si 1.86802 * 119.99832 * 179.97438 * 17 15 14
20 20 H 1.48500 * 109.47391 * 0.02562 * 19 17 15
21 21 H 1.48502 * 109.46998 * 120.00734 * 19 17 15
22 22 H 1.48498 * 109.47008 * 240.00108 * 19 17 15
23 23 C 1.45506 * 107.20437 * 5.00691 * 14 13 12
24 24 H 1.08993 * 109.56987 * 85.84087 * 23 14 13
25 25 C 1.47799 * 119.75314 * 183.52301 * 7 5 4
26 26 C 1.36006 * 113.08125 * 0.02562 * 4 3 2
27 27 S 1.70448 * 110.81652 * 0.21902 * 26 4 3
28 28 H 1.09000 * 109.47627 * 89.99434 * 1 2 3
29 29 H 1.09000 * 109.47090 * 209.99599 * 1 2 3
30 30 H 1.08997 * 109.47116 * 329.98732 * 1 2 3
31 31 H 1.08001 * 123.46110 * 0.03179 * 3 2 1
32 32 H 1.09004 * 109.22887 * 348.08734 * 8 7 5
33 33 H 1.09005 * 109.22886 * 107.44954 * 8 7 5
34 34 H 1.08997 * 109.96737 * 188.90390 * 9 8 7
35 35 H 1.09003 * 109.73370 * 67.85144 * 9 8 7
36 36 H 1.08993 * 110.96135 * 88.41845 * 12 10 9
37 37 H 1.09002 * 110.95685 * 324.67724 * 12 10 9
38 38 H 1.09004 * 109.92037 * 263.09167 * 13 12 10
39 39 H 1.09008 * 109.91842 * 141.79230 * 13 12 10
40 40 H 0.96997 * 119.99815 * 179.97438 * 18 17 15
41 41 H 1.08993 * 110.06477 * 247.93583 * 25 7 5
42 42 H 1.08995 * 110.06736 * 9.50233 * 25 7 5
43 43 H 1.07996 * 124.59575 * 179.97438 * 26 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.2630 1.0914 0.0000
4 6 3.6776 0.8003 -0.0006
5 6 4.7201 1.8395 -0.0013
6 8 5.6776 1.7408 0.7423
7 7 4.6135 2.9004 -0.8256
8 6 3.4229 3.0508 -1.6676
9 6 3.8132 3.3745 -3.1165
10 6 4.7709 4.5538 -3.0757
11 1 4.3278 5.4127 -2.5718
12 6 5.3649 4.9554 -4.4353
13 6 6.7080 5.6114 -4.0142
14 7 7.0491 5.0805 -2.6738
15 6 8.1041 5.4671 -1.8910
16 1 8.2567 5.0082 -0.9253
17 6 8.9774 6.4489 -2.3387
18 7 8.7911 7.0085 -3.5153
19 14 10.4161 6.9768 -1.2705
20 1 10.4032 6.2013 -0.0041
21 1 11.6884 6.7229 -1.9930
22 1 10.3007 8.4255 -0.9655
23 6 6.0542 4.0711 -2.3447
24 1 6.3569 3.1105 -2.7614
25 6 5.7005 3.9004 -0.8785
26 6 3.9476 -0.5327 -0.0016
27 16 2.5064 -1.4427 -0.0079
28 1 -0.3634 0.0001 -1.0276
29 1 -0.3633 -0.8900 0.5138
30 1 -0.3633 0.8898 0.5140
31 1 1.8614 2.0940 0.0005
32 1 2.8508 2.1231 -1.6494
33 1 2.8061 3.8598 -1.2761
34 1 2.9252 3.6374 -3.6913
35 1 4.3054 2.5123 -3.5664
36 1 4.7227 5.6740 -4.9444
37 1 5.5379 4.0786 -5.0594
38 1 6.5936 6.6943 -3.9666
39 1 7.4893 5.3487 -4.7276
40 1 9.4011 7.6947 -3.8279
41 1 5.3574 4.8481 -0.4638
42 1 6.5672 3.5402 -0.3243
43 1 4.9407 -0.9571 -0.0026
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001042268366.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:00:36
Heat of formation + Delta-G solvation = 30.061491 kcal
Electronic energy + Delta-G solvation = -25186.242320 eV
Core-core repulsion = 21744.808551 eV
Total energy + Delta-G solvation = -3441.433769 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 320.130 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-40.38277 -38.49363 -37.13841 -35.34659 -32.87811 -32.29758 -31.24413 -29.50126
-28.53649 -26.98551 -25.22401 -24.61917 -22.98889 -22.22859 -20.32809 -20.09881
-19.52935 -18.76333 -17.73765 -16.64848 -16.18865 -15.89445 -15.06236 -14.84745
-14.46888 -14.37551 -14.12346 -13.92136 -13.63942 -13.39099 -13.18471 -13.03659
-12.78049 -12.45637 -12.29002 -12.21457 -12.09966 -11.87462 -11.49347 -11.29935
-11.09998 -10.91456 -10.78304 -10.74139 -10.11557 -9.95593 -9.85553 -9.76194
-9.61595 -9.46971 -8.99279 -8.62046 -8.56697 -8.37081 -6.84326 -5.70699
-3.04386 0.70236 1.30738 1.69082 1.94554 3.03597 3.30076 3.42390
3.49067 3.51631 4.39850 4.52371 4.72039 4.86048 4.96897 4.98878
5.04630 5.17151 5.18809 5.24813 5.41420 5.53918 5.56139 5.63360
5.70294 5.70873 5.79544 5.83494 5.94774 6.04327 6.07787 6.10774
6.15518 6.18957 6.39249 6.50539 6.57713 6.73056 6.77110 7.06957
7.56058 7.57645 7.63220 7.82671 8.23985 8.32805 9.20513 9.83350
10.49941 11.41712
Molecular weight = 320.13amu
Principal moments of inertia in cm(-1)
A = 0.021870 B = 0.003360 C = 0.003047
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1280.003012 B = 8332.555903 C = 9186.055313
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.081 4.081
2 C -0.200 4.200
3 C -0.115 4.115
4 C -0.142 4.142
5 C 0.573 3.427
6 O -0.537 6.537
7 N -0.597 5.597
8 C 0.100 3.900
9 C -0.119 4.119
10 C -0.114 4.114
11 H 0.077 0.923
12 C -0.138 4.138
13 C 0.177 3.823
14 N -0.592 5.592
15 C -0.227 4.227
16 H 0.080 0.920
17 C -0.007 4.007
18 N -0.921 5.921
19 Si 0.909 3.091
20 H -0.278 1.278
21 H -0.291 1.291
22 H -0.291 1.291
23 C 0.157 3.843
24 H 0.023 0.977
25 C 0.117 3.883
26 C -0.195 4.195
27 S 0.172 5.828
28 H 0.076 0.924
29 H 0.069 0.931
30 H 0.077 0.923
31 H 0.151 0.849
32 H 0.089 0.911
33 H 0.064 0.936
34 H 0.073 0.927
35 H 0.066 0.934
36 H 0.059 0.941
37 H 0.055 0.945
38 H 0.056 0.944
39 H 0.037 0.963
40 H 0.251 0.749
41 H 0.072 0.928
42 H 0.092 0.908
43 H 0.171 0.829
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.688 -14.044 2.751 24.340
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.317 4.317
3 C -0.144 4.144
4 C -0.160 4.160
5 C 0.359 3.641
6 O -0.415 6.415
7 N -0.329 5.329
8 C -0.023 4.023
9 C -0.158 4.158
10 C -0.133 4.133
11 H 0.096 0.904
12 C -0.176 4.176
13 C 0.053 3.947
14 N -0.317 5.317
15 C -0.356 4.356
16 H 0.098 0.902
17 C -0.203 4.203
18 N -0.569 5.569
19 Si 0.740 3.260
20 H -0.203 1.203
21 H -0.218 1.218
22 H -0.218 1.218
23 C 0.047 3.953
24 H 0.040 0.960
25 C -0.005 4.005
26 C -0.332 4.332
27 S 0.437 5.563
28 H 0.094 0.906
29 H 0.087 0.913
30 H 0.096 0.904
31 H 0.169 0.831
32 H 0.107 0.893
33 H 0.082 0.918
34 H 0.091 0.909
35 H 0.085 0.915
36 H 0.078 0.922
37 H 0.074 0.926
38 H 0.074 0.926
39 H 0.055 0.945
40 H 0.062 0.938
41 H 0.090 0.910
42 H 0.110 0.890
43 H 0.189 0.811
Dipole moment (debyes) X Y Z Total
from point charges -19.271 -15.456 3.127 24.901
hybrid contribution 1.305 1.946 0.407 2.378
sum -17.967 -13.511 3.534 22.756
Atomic orbital electron populations
1.20338 0.87444 1.03288 1.02931 1.24347 1.00406 0.96138 1.10768
1.21211 0.90721 0.99624 1.02863 1.20229 0.93703 0.93444 1.08591
1.17722 0.85063 0.80877 0.80440 1.90810 1.33004 1.77276 1.40417
1.48160 1.20707 1.23896 1.40161 1.21964 0.86919 1.02157 0.91222
1.21734 0.99865 0.98982 0.95191 1.22284 0.95963 0.96835 0.98256
0.90449 1.22731 0.99306 1.00002 0.95594 1.21545 0.90225 0.97197
0.85710 1.44185 1.27640 1.42680 1.17216 1.19105 1.01350 1.16425
0.98671 0.90197 1.24783 0.99310 0.99059 0.97146 1.69954 1.38620
1.29649 1.18680 0.86069 0.82242 0.78141 0.79539 1.20348 1.21769
1.21759 1.20981 0.89041 0.93172 0.92056 0.95951 1.21750 0.89284
0.90342 0.99099 1.25401 1.04530 0.96848 1.06449 1.82961 0.93807
1.08528 1.70968 0.90570 0.91252 0.90430 0.83133 0.89278 0.91780
0.90852 0.91484 0.92227 0.92593 0.92605 0.94451 0.93828 0.91007
0.88961 0.81137
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.45 10.34 36.00 0.37 -0.08 16
2 C -0.20 -1.72 6.44 -36.18 -0.23 -1.95 16
3 C -0.12 -1.18 7.71 -39.02 -0.30 -1.49 16
4 C -0.14 -1.89 5.09 -104.63 -0.53 -2.43 16
5 C 0.57 9.77 7.42 -12.62 -0.09 9.67 16
6 O -0.54 -11.27 16.43 5.25 0.09 -11.19 16
7 N -0.60 -9.66 3.01 -174.33 -0.53 -10.19 16
8 C 0.10 1.24 5.16 -3.73 -0.02 1.22 16
9 C -0.12 -1.56 5.70 -26.99 -0.15 -1.71 16
10 C -0.11 -1.93 2.62 -89.51 -0.23 -2.17 16
11 H 0.08 1.35 8.13 -51.93 -0.42 0.93 16
12 C -0.14 -2.52 6.54 -25.14 -0.16 -2.68 16
13 C 0.18 4.27 5.45 -1.91 -0.01 4.26 16
14 N -0.59 -15.07 3.35 -162.90 -0.55 -15.61 16
15 C -0.23 -6.36 9.88 -15.06 -0.15 -6.51 16
16 H 0.08 2.20 7.41 -52.48 -0.39 1.81 16
17 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16
18 N -0.92 -27.12 10.44 55.49 0.58 -26.55 16
19 Si 0.91 22.53 29.55 -169.99 -5.02 17.50 16
20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16
21 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16
22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16
23 C 0.16 3.26 2.77 -67.82 -0.19 3.08 16
24 H 0.02 0.51 7.90 -51.93 -0.41 0.10 16
25 C 0.12 2.29 5.68 -3.95 -0.02 2.27 16
26 C -0.19 -2.29 10.76 29.93 0.32 -1.97 16
27 S 0.17 1.49 23.00 -107.50 -2.47 -0.99 16
28 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16
29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16
30 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16
31 H 0.15 1.34 7.04 -52.49 -0.37 0.97 16
32 H 0.09 0.95 4.44 -51.93 -0.23 0.72 16
33 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16
34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16
35 H 0.07 0.92 7.97 -51.93 -0.41 0.51 16
36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16
37 H 0.06 0.97 8.12 -51.93 -0.42 0.55 16
38 H 0.06 1.48 7.21 -51.93 -0.37 1.11 16
39 H 0.04 0.99 7.78 -51.92 -0.40 0.59 16
40 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16
41 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16
42 H 0.09 2.04 6.78 -51.93 -0.35 1.68 16
43 H 0.17 1.97 8.06 -52.49 -0.42 1.54 16
LS Contribution 350.30 15.07 5.28 5.28
Total: -1.00 -32.77 350.30 -10.43 -43.20
By element:
Atomic # 1 Polarization: 5.61 SS G_CDS: -6.30 Total: -0.69 kcal
Atomic # 6 Polarization: 0.73 SS G_CDS: -1.50 Total: -0.77 kcal
Atomic # 7 Polarization: -51.86 SS G_CDS: -0.49 Total: -52.35 kcal
Atomic # 8 Polarization: -11.27 SS G_CDS: 0.09 Total: -11.19 kcal
Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal
Atomic # 16 Polarization: 1.49 SS G_CDS: -2.47 Total: -0.99 kcal
Total LS contribution 5.28 Total: 5.28 kcal
Total: -32.77 -10.43 -43.20 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001042268366.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 73.264 kcal
(2) G-P(sol) polarization free energy of solvation -32.772 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.491 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.430 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.202 kcal
(6) G-S(sol) free energy of system = (1) + (5) 30.061 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds