Wall clock time and date at job start Tue Mar 31 2020 13:00:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50695 * 1
3 3 C 1.32768 * 124.70978 * 2 1
4 4 C 1.44426 * 113.08158 * 180.02562 * 3 2 1
5 5 C 1.47199 * 123.46167 * 179.97438 * 4 3 2
6 6 O 1.21630 * 119.99789 * 135.06884 * 5 4 3
7 7 N 1.34775 * 119.99913 * 315.07632 * 5 4 3
8 8 C 1.46595 * 119.75645 * 3.24830 * 7 5 4
9 9 C 1.53500 * 110.93318 * 227.68274 * 8 7 5
10 10 C 1.51975 * 107.36902 * 308.44616 * 9 8 7
11 11 H 1.08996 * 111.57335 * 302.99611 * 10 9 8
12 12 C 1.53707 * 114.99443 * 175.28856 * 10 9 8
13 13 C 1.55299 * 101.81360 * 206.55071 * 12 10 9
14 14 N 1.48153 * 107.04435 * 22.44122 * 13 12 10
15 15 C 1.36938 * 126.39828 * 184.97945 * 14 13 12
16 16 H 1.08005 * 119.99998 * 180.02562 * 15 14 13
17 17 C 1.38809 * 119.99971 * 0.02562 * 15 14 13
18 18 N 1.31619 * 120.00047 * 0.02562 * 17 15 14
19 19 Si 1.86802 * 119.99832 * 179.97438 * 17 15 14
20 20 H 1.48500 * 109.47391 * 0.02562 * 19 17 15
21 21 H 1.48502 * 109.46998 * 120.00734 * 19 17 15
22 22 H 1.48498 * 109.47008 * 240.00108 * 19 17 15
23 23 C 1.45506 * 107.20437 * 5.00691 * 14 13 12
24 24 H 1.08993 * 109.56987 * 85.84087 * 23 14 13
25 25 C 1.47799 * 119.75314 * 183.52301 * 7 5 4
26 26 C 1.36006 * 113.08125 * 0.02562 * 4 3 2
27 27 S 1.70448 * 110.81652 * 0.21902 * 26 4 3
28 28 H 1.09000 * 109.47627 * 89.99434 * 1 2 3
29 29 H 1.09000 * 109.47090 * 209.99599 * 1 2 3
30 30 H 1.08997 * 109.47116 * 329.98732 * 1 2 3
31 31 H 1.08001 * 123.46110 * 0.03179 * 3 2 1
32 32 H 1.09004 * 109.22887 * 348.08734 * 8 7 5
33 33 H 1.09005 * 109.22886 * 107.44954 * 8 7 5
34 34 H 1.08997 * 109.96737 * 188.90390 * 9 8 7
35 35 H 1.09003 * 109.73370 * 67.85144 * 9 8 7
36 36 H 1.08993 * 110.96135 * 88.41845 * 12 10 9
37 37 H 1.09002 * 110.95685 * 324.67724 * 12 10 9
38 38 H 1.09004 * 109.92037 * 263.09167 * 13 12 10
39 39 H 1.09008 * 109.91842 * 141.79230 * 13 12 10
40 40 H 0.96997 * 119.99815 * 179.97438 * 18 17 15
41 41 H 1.08993 * 110.06477 * 247.93583 * 25 7 5
42 42 H 1.08995 * 110.06736 * 9.50233 * 25 7 5
43 43 H 1.07996 * 124.59575 * 179.97438 * 26 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.2630 1.0914 0.0000
4 6 3.6776 0.8003 -0.0006
5 6 4.7201 1.8395 -0.0013
6 8 5.6776 1.7408 0.7423
7 7 4.6135 2.9004 -0.8256
8 6 3.4229 3.0508 -1.6676
9 6 3.8132 3.3745 -3.1165
10 6 4.7709 4.5538 -3.0757
11 1 4.3278 5.4127 -2.5718
12 6 5.3649 4.9554 -4.4353
13 6 6.7080 5.6114 -4.0142
14 7 7.0491 5.0805 -2.6738
15 6 8.1041 5.4671 -1.8910
16 1 8.2567 5.0082 -0.9253
17 6 8.9774 6.4489 -2.3387
18 7 8.7911 7.0085 -3.5153
19 14 10.4161 6.9768 -1.2705
20 1 10.4032 6.2013 -0.0041
21 1 11.6884 6.7229 -1.9930
22 1 10.3007 8.4255 -0.9655
23 6 6.0542 4.0711 -2.3447
24 1 6.3569 3.1105 -2.7614
25 6 5.7005 3.9004 -0.8785
26 6 3.9476 -0.5327 -0.0016
27 16 2.5064 -1.4427 -0.0079
28 1 -0.3634 0.0001 -1.0276
29 1 -0.3633 -0.8900 0.5138
30 1 -0.3633 0.8898 0.5140
31 1 1.8614 2.0940 0.0005
32 1 2.8508 2.1231 -1.6494
33 1 2.8061 3.8598 -1.2761
34 1 2.9252 3.6374 -3.6913
35 1 4.3054 2.5123 -3.5664
36 1 4.7227 5.6740 -4.9444
37 1 5.5379 4.0786 -5.0594
38 1 6.5936 6.6943 -3.9666
39 1 7.4893 5.3487 -4.7276
40 1 9.4011 7.6947 -3.8279
41 1 5.3574 4.8481 -0.4638
42 1 6.5672 3.5402 -0.3243
43 1 4.9407 -0.9571 -0.0026
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001042268366.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:00:36
Heat of formation + Delta-G solvation = 9.946436 kcal
Electronic energy + Delta-G solvation = -25187.114574 eV
Core-core repulsion = 21744.808551 eV
Total energy + Delta-G solvation = -3442.306023 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 320.130 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-41.68832 -39.93268 -38.12832 -36.88368 -34.68441 -33.05131 -32.86542 -31.04585
-30.23939 -27.64440 -26.57630 -26.46043 -24.23587 -23.59194 -21.84233 -21.42292
-20.81699 -19.92194 -18.80614 -18.45743 -17.33610 -17.15111 -16.87541 -16.21454
-15.94448 -15.73486 -15.42677 -15.01266 -14.75957 -14.57639 -14.37445 -14.20580
-13.96962 -13.81535 -13.57708 -13.22667 -13.15613 -13.12661 -12.91357 -12.83399
-12.76641 -12.51643 -12.12384 -11.99924 -11.82802 -11.79648 -11.56319 -11.34138
-11.05619 -11.02522 -10.76186 -9.83170 -9.66927 -9.29242 -8.93769 -7.89271
-5.24322 -0.14368 0.57551 0.89378 1.05843 1.41619 1.42116 1.53048
1.80036 2.09169 2.46875 3.28877 3.42162 3.56923 3.78280 3.84339
3.94196 3.97540 4.20372 4.24403 4.28195 4.32973 4.41479 4.51871
4.56863 4.60470 4.71950 4.80156 4.86963 4.88321 4.90117 4.98743
5.02688 5.08947 5.13385 5.21950 5.23299 5.35758 5.42969 5.47509
5.57820 5.64555 5.76238 6.16451 6.33153 7.02375 7.05654 7.73417
8.40273 9.21766
Molecular weight = 320.13amu
Principal moments of inertia in cm(-1)
A = 0.021870 B = 0.003360 C = 0.003047
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1280.003012 B = 8332.555903 C = 9186.055313
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.083 4.083
2 C -0.188 4.188
3 C -0.128 4.128
4 C -0.163 4.163
5 C 0.567 3.433
6 O -0.593 6.593
7 N -0.594 5.594
8 C 0.095 3.905
9 C -0.110 4.110
10 C -0.096 4.096
11 H 0.079 0.921
12 C -0.122 4.122
13 C 0.180 3.820
14 N -0.613 5.613
15 C -0.238 4.238
16 H 0.073 0.927
17 C -0.061 4.061
18 N -0.947 5.947
19 Si 0.972 3.028
20 H -0.273 1.273
21 H -0.291 1.291
22 H -0.286 1.286
23 C 0.148 3.852
24 H 0.005 0.995
25 C 0.129 3.871
26 C -0.217 4.217
27 S 0.231 5.769
28 H 0.093 0.907
29 H 0.081 0.919
30 H 0.088 0.912
31 H 0.167 0.833
32 H 0.116 0.884
33 H 0.089 0.911
34 H 0.117 0.883
35 H 0.061 0.939
36 H 0.089 0.911
37 H 0.068 0.932
38 H 0.024 0.976
39 H -0.001 1.001
40 H 0.248 0.752
41 H 0.069 0.931
42 H 0.054 0.946
43 H 0.161 0.839
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -23.835 -15.464 2.568 28.528
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.306 4.306
3 C -0.156 4.156
4 C -0.181 4.181
5 C 0.355 3.645
6 O -0.475 6.475
7 N -0.325 5.325
8 C -0.026 4.026
9 C -0.148 4.148
10 C -0.116 4.116
11 H 0.097 0.903
12 C -0.160 4.160
13 C 0.056 3.944
14 N -0.339 5.339
15 C -0.367 4.367
16 H 0.091 0.909
17 C -0.254 4.254
18 N -0.596 5.596
19 Si 0.800 3.200
20 H -0.198 1.198
21 H -0.218 1.218
22 H -0.213 1.213
23 C 0.040 3.960
24 H 0.022 0.978
25 C 0.006 3.994
26 C -0.356 4.356
27 S 0.497 5.503
28 H 0.111 0.889
29 H 0.100 0.900
30 H 0.107 0.893
31 H 0.185 0.815
32 H 0.134 0.866
33 H 0.107 0.893
34 H 0.135 0.865
35 H 0.080 0.920
36 H 0.107 0.893
37 H 0.087 0.913
38 H 0.043 0.957
39 H 0.017 0.983
40 H 0.057 0.943
41 H 0.087 0.913
42 H 0.073 0.927
43 H 0.178 0.822
Dipole moment (debyes) X Y Z Total
from point charges -23.482 -16.905 2.930 29.082
hybrid contribution 2.573 2.256 0.481 3.455
sum -20.910 -14.649 3.411 25.757
Atomic orbital electron populations
1.20507 0.84818 1.04494 1.04363 1.24814 1.02016 0.95487 1.08249
1.21224 0.88939 1.01059 1.04396 1.20068 0.94184 0.92574 1.11288
1.18409 0.85240 0.81362 0.79451 1.90768 1.35564 1.78460 1.42708
1.48214 1.20826 1.22875 1.40620 1.22324 0.85517 1.04582 0.90146
1.21740 1.00258 0.96586 0.96192 1.22219 0.94605 0.98463 0.96270
0.90304 1.22607 0.96085 1.00663 0.96608 1.21373 0.92538 0.95927
0.84555 1.44455 1.28232 1.43472 1.17702 1.19339 1.02429 1.16210
0.98752 0.90895 1.25551 1.01853 0.99514 0.98487 1.70151 1.39364
1.30067 1.20001 0.85106 0.79057 0.77699 0.78098 1.19763 1.21774
1.21293 1.21107 0.90184 0.91302 0.93374 0.97782 1.21319 0.89523
0.90975 0.97612 1.25583 1.06115 0.97300 1.06568 1.82786 0.91210
1.07383 1.68884 0.88877 0.90050 0.89287 0.81548 0.86601 0.89320
0.86470 0.91983 0.89284 0.91301 0.95720 0.98280 0.94287 0.91276
0.92739 0.82168
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.51 10.34 71.23 0.74 0.23 16
2 C -0.19 -2.48 6.44 24.51 0.16 -2.32 16
3 C -0.13 -2.23 7.71 22.67 0.17 -2.06 16
4 C -0.16 -4.17 5.09 -19.87 -0.10 -4.27 16
5 C 0.57 19.77 7.42 86.60 0.64 20.41 16
6 O -0.59 -26.49 16.43 -4.13 -0.07 -26.56 16
7 N -0.59 -19.14 3.01 -823.71 -2.48 -21.62 16
8 C 0.10 2.06 5.16 86.53 0.45 2.50 16
9 C -0.11 -2.45 5.70 30.42 0.17 -2.28 16
10 C -0.10 -3.10 2.62 -10.08 -0.03 -3.12 16
11 H 0.08 2.57 8.13 -2.39 -0.02 2.55 16
12 C -0.12 -4.26 6.54 31.62 0.21 -4.05 16
13 C 0.18 9.01 5.45 86.85 0.47 9.49 16
14 N -0.61 -32.62 3.35 -669.31 -2.24 -34.86 16
15 C -0.24 -13.99 9.88 84.03 0.83 -13.16 16
16 H 0.07 4.27 7.41 -2.91 -0.02 4.24 16
17 C -0.06 -3.59 5.49 84.86 0.47 -3.12 16
18 N -0.95 -58.11 10.44 21.65 0.23 -57.89 16
19 Si 0.97 47.97 29.55 68.60 2.03 50.00 16
20 H -0.27 -13.07 7.11 99.48 0.71 -12.36 16
21 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16
22 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16
23 C 0.15 6.35 2.77 45.60 0.13 6.48 16
24 H 0.00 0.22 7.90 -2.39 -0.02 0.20 16
25 C 0.13 5.27 5.68 85.73 0.49 5.76 16
26 C -0.22 -4.96 10.76 67.30 0.72 -4.24 16
27 S 0.23 3.30 23.00 -56.49 -1.30 2.00 16
28 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16
29 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16
30 H 0.09 0.41 8.14 -2.39 -0.02 0.40 16
31 H 0.17 2.28 7.04 -2.91 -0.02 2.26 16
32 H 0.12 1.99 4.44 -2.38 -0.01 1.98 16
33 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16
34 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16
35 H 0.06 1.50 7.97 -2.39 -0.02 1.48 16
36 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16
37 H 0.07 2.25 8.12 -2.39 -0.02 2.23 16
38 H 0.02 1.36 7.21 -2.39 -0.02 1.34 16
39 H 0.00 -0.06 7.78 -2.38 -0.02 -0.08 16
40 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16
41 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16
42 H 0.05 2.61 6.78 -2.39 -0.02 2.59 16
43 H 0.16 3.84 8.06 -2.91 -0.02 3.81 16
Total: -1.00 -78.16 350.30 2.69 -75.47
By element:
Atomic # 1 Polarization: 6.22 SS G_CDS: 1.01 Total: 7.23 kcal
Atomic # 6 Polarization: 0.71 SS G_CDS: 5.52 Total: 6.22 kcal
Atomic # 7 Polarization: -109.87 SS G_CDS: -4.50 Total: -114.37 kcal
Atomic # 8 Polarization: -26.49 SS G_CDS: -0.07 Total: -26.56 kcal
Atomic # 14 Polarization: 47.97 SS G_CDS: 2.03 Total: 50.00 kcal
Atomic # 16 Polarization: 3.30 SS G_CDS: -1.30 Total: 2.00 kcal
Total: -78.16 2.69 -75.47 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001042268366.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 85.420 kcal
(2) G-P(sol) polarization free energy of solvation -78.163 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.257 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.689 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.474 kcal
(6) G-S(sol) free energy of system = (1) + (5) 9.946 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds