Wall clock time and date at job start Tue Mar 31 2020 13:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.32769 * 124.70911 * 2 1 4 4 C 1.44429 * 113.07693 * 180.17837 * 3 2 1 5 5 C 1.47192 * 123.45812 * 179.80617 * 4 3 2 6 6 O 1.21636 * 120.00187 * 328.36120 * 5 4 3 7 7 N 1.34779 * 119.99920 * 148.35765 * 5 4 3 8 8 C 1.46598 * 119.74939 * 173.60075 * 7 5 4 9 9 C 1.53887 * 110.70581 * 132.28043 * 8 7 5 10 10 C 1.51974 * 107.28999 * 51.81046 * 9 8 7 11 11 H 1.08995 * 111.01666 * 56.51659 * 10 9 8 12 12 C 1.53708 * 115.61041 * 184.24344 * 10 9 8 13 13 C 1.55353 * 101.89953 * 153.51070 * 12 10 9 14 14 N 1.48156 * 107.01951 * 337.90783 * 13 12 10 15 15 C 1.36931 * 126.39756 * 174.88604 * 14 13 12 16 16 H 1.07996 * 120.00060 * 179.68421 * 15 14 13 17 17 C 1.38813 * 119.99928 * 359.68979 * 15 14 13 18 18 N 1.31622 * 120.00145 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99779 * 180.27585 * 17 15 14 20 20 H 1.48499 * 109.46789 * 269.72003 * 19 17 15 21 21 H 1.48498 * 109.47069 * 29.71924 * 19 17 15 22 22 H 1.48505 * 109.46978 * 149.72354 * 19 17 15 23 23 C 1.45507 * 107.20274 * 354.62371 * 14 13 12 24 24 H 1.09003 * 109.56916 * 273.61213 * 23 14 13 25 25 C 1.46254 * 120.15210 * 353.72166 * 7 5 4 26 26 C 1.36010 * 113.08160 * 359.53356 * 4 3 2 27 27 S 1.70451 * 110.81434 * 0.25178 * 26 4 3 28 28 H 1.08999 * 109.47167 * 180.32204 * 1 2 3 29 29 H 1.08995 * 109.47284 * 300.33194 * 1 2 3 30 30 H 1.09001 * 109.46952 * 60.33052 * 1 2 3 31 31 H 1.08001 * 123.46194 * 359.97438 * 3 2 1 32 32 H 1.09002 * 109.23163 * 11.96144 * 8 7 5 33 33 H 1.09004 * 109.19486 * 252.57415 * 8 7 5 34 34 H 1.08999 * 109.89089 * 292.35850 * 9 8 7 35 35 H 1.09006 * 109.89030 * 171.25500 * 9 8 7 36 36 H 1.08992 * 110.95689 * 271.84745 * 12 10 9 37 37 H 1.09004 * 110.95609 * 35.55138 * 12 10 9 38 38 H 1.08996 * 110.03996 * 218.50045 * 13 12 10 39 39 H 1.09001 * 109.81727 * 97.18344 * 13 12 10 40 40 H 0.96996 * 119.99502 * 180.02562 * 18 17 15 41 41 H 1.09004 * 109.63185 * 112.22227 * 25 7 5 42 42 H 1.09000 * 109.72898 * 351.15903 * 25 7 5 43 43 H 1.07994 * 124.59085 * 180.27861 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2631 1.0914 0.0000 4 6 3.6777 0.8002 -0.0041 5 6 4.7201 1.8394 -0.0091 6 8 4.5159 2.9031 -0.5627 7 7 5.9009 1.6123 0.5998 8 6 6.9850 2.5910 0.4727 9 6 7.6032 2.8997 1.8477 10 6 7.9602 1.5701 2.4913 11 1 8.6271 0.9926 1.8512 12 6 8.5037 1.6514 3.9267 13 6 8.1095 0.2614 4.4977 14 7 6.9894 -0.2452 3.6709 15 6 6.4020 -1.4785 3.7664 16 1 5.5843 -1.7394 3.1110 17 6 6.8576 -2.3934 4.7057 18 7 7.8545 -2.0756 5.5043 19 14 6.0614 -4.0786 4.8307 20 1 4.9392 -4.0250 5.8017 21 1 5.5444 -4.4819 3.4984 22 1 7.0679 -5.0686 5.2916 23 6 6.6258 0.8147 2.7427 24 1 5.9105 1.4863 3.2175 25 6 6.1015 0.3931 1.3822 26 6 3.9477 -0.5328 0.0030 27 16 2.5064 -1.4427 0.0077 28 1 -0.3633 -1.0276 0.0058 29 1 -0.3633 0.5189 0.8869 30 1 -0.3633 0.5087 -0.8929 31 1 1.8615 2.0940 -0.0004 32 1 6.5895 3.5110 0.0421 33 1 7.7554 2.1890 -0.1853 34 1 6.8811 3.4303 2.4683 35 1 8.5015 3.5045 1.7230 36 1 9.5856 1.7833 3.9271 37 1 8.0151 2.4509 4.4838 38 1 7.7901 0.3607 5.5351 39 1 8.9579 -0.4196 4.4310 40 1 8.1730 -2.7151 6.1604 41 1 6.8291 -0.2469 0.8830 42 1 5.1533 -0.1329 1.4935 43 1 4.9408 -0.9572 0.0058 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042268368.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:41 Heat of formation + Delta-G solvation = 32.807234 kcal Electronic energy + Delta-G solvation = -25528.994237 eV Core-core repulsion = 22087.679532 eV Total energy + Delta-G solvation = -3441.314705 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.43967 -38.44707 -37.00622 -35.27072 -33.33430 -32.20204 -31.14543 -29.31157 -28.53545 -26.77860 -25.44147 -24.38762 -23.23541 -22.00364 -20.30343 -20.05755 -19.53000 -18.88400 -17.26674 -16.62134 -16.56352 -15.61228 -15.06410 -14.80548 -14.64571 -14.27531 -14.03955 -13.90086 -13.61124 -13.24683 -13.16574 -13.03577 -12.63180 -12.34149 -12.17123 -12.03302 -11.97286 -11.77750 -11.62664 -11.30451 -10.96290 -10.92325 -10.84353 -10.72160 -10.22360 -10.06498 -9.85595 -9.82949 -9.66686 -9.42659 -8.69946 -8.67340 -8.51678 -8.26775 -6.91049 -5.77524 -3.11693 0.84580 1.53446 1.91743 2.09822 3.08002 3.35245 3.39987 3.42335 3.44159 4.42789 4.62848 4.82604 4.95300 5.07316 5.14632 5.17879 5.27213 5.37175 5.39362 5.43154 5.56521 5.59805 5.71381 5.74661 5.78560 5.86442 5.90724 5.98833 6.05421 6.07662 6.11309 6.23209 6.25721 6.33115 6.46837 6.56890 6.65136 6.78805 7.01518 7.46869 7.56912 7.58961 7.75521 8.17375 8.32244 9.12373 9.75961 10.43871 11.34594 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.010187 B = 0.005787 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.990024 B = 4837.047334 C = 7209.844804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.207 4.207 3 C -0.092 4.092 4 C -0.150 4.150 5 C 0.580 3.420 6 O -0.549 6.549 7 N -0.596 5.596 8 C 0.113 3.887 9 C -0.118 4.118 10 C -0.113 4.113 11 H 0.076 0.924 12 C -0.138 4.138 13 C 0.178 3.822 14 N -0.592 5.592 15 C -0.230 4.230 16 H 0.077 0.923 17 C -0.004 4.004 18 N -0.919 5.919 19 Si 0.907 3.093 20 H -0.288 1.288 21 H -0.280 1.280 22 H -0.290 1.290 23 C 0.156 3.844 24 H 0.026 0.974 25 C 0.093 3.907 26 C -0.208 4.208 27 S 0.184 5.816 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.148 0.852 32 H 0.089 0.911 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.037 0.963 39 H 0.056 0.944 40 H 0.253 0.747 41 H 0.071 0.929 42 H 0.096 0.904 43 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.354 4.946 -10.555 13.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.324 4.324 3 C -0.121 4.121 4 C -0.168 4.168 5 C 0.367 3.633 6 O -0.428 6.428 7 N -0.328 5.328 8 C -0.010 4.010 9 C -0.157 4.157 10 C -0.133 4.133 11 H 0.094 0.906 12 C -0.176 4.176 13 C 0.054 3.946 14 N -0.317 5.317 15 C -0.358 4.358 16 H 0.095 0.905 17 C -0.201 4.201 18 N -0.566 5.566 19 Si 0.737 3.263 20 H -0.215 1.215 21 H -0.206 1.206 22 H -0.216 1.216 23 C 0.047 3.953 24 H 0.043 0.957 25 C -0.030 4.030 26 C -0.346 4.346 27 S 0.451 5.549 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.166 0.834 32 H 0.107 0.893 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.055 0.945 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.089 0.911 42 H 0.114 0.886 43 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -7.722 3.725 -10.693 13.706 hybrid contribution 0.237 0.495 0.314 0.632 sum -7.486 4.220 -10.379 13.475 Atomic orbital electron populations 1.20301 0.87587 1.02832 1.03010 1.24352 1.00399 0.96228 1.11425 1.20900 0.90249 0.99503 1.01457 1.20137 0.94189 0.92548 1.09918 1.17699 0.81177 0.86098 0.78331 1.90736 1.79919 1.25865 1.46297 1.47716 1.12771 1.22325 1.49989 1.21593 0.88764 0.93063 0.97558 1.21787 1.00411 0.97798 0.95699 1.22273 0.98549 0.95652 0.96788 0.90560 1.22730 0.99495 1.00184 0.95213 1.21554 0.90843 0.88900 0.93342 1.44152 1.38391 1.11925 1.37234 1.18956 1.12463 0.88574 1.15815 0.90507 1.24778 0.98463 0.98479 0.98364 1.69941 1.28167 1.34840 1.23618 0.86196 0.78342 0.83905 0.77811 1.21537 1.20572 1.21639 1.20980 0.93989 0.91104 0.89273 0.95691 1.22089 1.02791 0.85482 0.92640 1.25985 1.04992 0.97507 1.06123 1.83081 0.93792 1.08349 1.69697 0.91427 0.90549 0.90652 0.83409 0.89297 0.91893 0.91458 0.90856 0.92196 0.92586 0.94450 0.92558 0.93686 0.91080 0.88567 0.80384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 10.35 36.01 0.37 -0.30 16 2 C -0.21 -2.47 6.44 -36.18 -0.23 -2.70 16 3 C -0.09 -1.27 10.10 -39.02 -0.39 -1.67 16 4 C -0.15 -2.33 5.42 -104.63 -0.57 -2.89 16 5 C 0.58 9.97 7.50 -12.62 -0.09 9.88 16 6 O -0.55 -10.59 16.31 5.25 0.09 -10.51 16 7 N -0.60 -9.70 2.98 -175.34 -0.52 -10.22 16 8 C 0.11 1.62 6.35 -3.53 -0.02 1.60 16 9 C -0.12 -1.68 5.76 -26.79 -0.15 -1.83 16 10 C -0.11 -1.93 2.58 -89.51 -0.23 -2.16 16 11 H 0.08 1.33 8.12 -51.93 -0.42 0.91 16 12 C -0.14 -2.51 6.57 -25.12 -0.16 -2.67 16 13 C 0.18 4.17 5.46 -1.88 -0.01 4.16 16 14 N -0.59 -14.31 3.34 -162.87 -0.54 -14.86 16 15 C -0.23 -6.02 9.88 -15.06 -0.15 -6.17 16 16 H 0.08 1.92 7.43 -52.49 -0.39 1.53 16 17 C 0.00 -0.11 5.49 -17.43 -0.10 -0.21 16 18 N -0.92 -26.13 10.44 55.49 0.58 -25.55 16 19 Si 0.91 21.29 29.55 -169.99 -5.02 16.26 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 23 C 0.16 3.10 2.80 -67.82 -0.19 2.91 16 24 H 0.03 0.55 7.94 -51.93 -0.41 0.14 16 25 C 0.09 1.63 4.04 -4.79 -0.02 1.61 16 26 C -0.21 -2.95 8.35 29.93 0.25 -2.70 16 27 S 0.18 2.23 23.00 -107.50 -2.47 -0.24 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.15 1.93 8.06 -52.49 -0.42 1.51 16 32 H 0.09 1.30 6.92 -51.93 -0.36 0.94 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.07 1.00 7.99 -51.93 -0.41 0.59 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.06 0.97 8.13 -51.93 -0.42 0.55 16 38 H 0.04 0.97 7.79 -51.93 -0.40 0.57 16 39 H 0.06 1.46 7.19 -51.93 -0.37 1.08 16 40 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.07 1.23 8.08 -51.93 -0.42 0.81 16 42 H 0.10 1.71 4.15 -51.93 -0.22 1.49 16 43 H 0.18 2.45 6.17 -52.49 -0.32 2.12 16 LS Contribution 349.14 15.07 5.26 5.26 Total: -1.00 -30.51 349.14 -10.59 -41.10 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -6.25 Total: 1.90 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: -1.70 Total: -3.15 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: -0.49 Total: -50.63 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.09 Total: -10.51 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 2.23 SS G_CDS: -2.47 Total: -0.24 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.51 -10.59 -41.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042268368.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.908 kcal (2) G-P(sol) polarization free energy of solvation -30.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds