Wall clock time and date at job start Tue Mar 31 2020 13:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.32769 * 124.70911 * 2 1 4 4 C 1.44429 * 113.07693 * 180.17837 * 3 2 1 5 5 C 1.47192 * 123.45812 * 179.80617 * 4 3 2 6 6 O 1.21636 * 120.00187 * 328.36120 * 5 4 3 7 7 N 1.34779 * 119.99920 * 148.35765 * 5 4 3 8 8 C 1.46598 * 119.74939 * 173.60075 * 7 5 4 9 9 C 1.53887 * 110.70581 * 132.28043 * 8 7 5 10 10 C 1.51974 * 107.28999 * 51.81046 * 9 8 7 11 11 H 1.08995 * 111.01666 * 56.51659 * 10 9 8 12 12 C 1.53708 * 115.61041 * 184.24344 * 10 9 8 13 13 C 1.55353 * 101.89953 * 153.51070 * 12 10 9 14 14 N 1.48156 * 107.01951 * 337.90783 * 13 12 10 15 15 C 1.36931 * 126.39756 * 174.88604 * 14 13 12 16 16 H 1.07996 * 120.00060 * 179.68421 * 15 14 13 17 17 C 1.38813 * 119.99928 * 359.68979 * 15 14 13 18 18 N 1.31622 * 120.00145 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99779 * 180.27585 * 17 15 14 20 20 H 1.48499 * 109.46789 * 269.72003 * 19 17 15 21 21 H 1.48498 * 109.47069 * 29.71924 * 19 17 15 22 22 H 1.48505 * 109.46978 * 149.72354 * 19 17 15 23 23 C 1.45507 * 107.20274 * 354.62371 * 14 13 12 24 24 H 1.09003 * 109.56916 * 273.61213 * 23 14 13 25 25 C 1.46254 * 120.15210 * 353.72166 * 7 5 4 26 26 C 1.36010 * 113.08160 * 359.53356 * 4 3 2 27 27 S 1.70451 * 110.81434 * 0.25178 * 26 4 3 28 28 H 1.08999 * 109.47167 * 180.32204 * 1 2 3 29 29 H 1.08995 * 109.47284 * 300.33194 * 1 2 3 30 30 H 1.09001 * 109.46952 * 60.33052 * 1 2 3 31 31 H 1.08001 * 123.46194 * 359.97438 * 3 2 1 32 32 H 1.09002 * 109.23163 * 11.96144 * 8 7 5 33 33 H 1.09004 * 109.19486 * 252.57415 * 8 7 5 34 34 H 1.08999 * 109.89089 * 292.35850 * 9 8 7 35 35 H 1.09006 * 109.89030 * 171.25500 * 9 8 7 36 36 H 1.08992 * 110.95689 * 271.84745 * 12 10 9 37 37 H 1.09004 * 110.95609 * 35.55138 * 12 10 9 38 38 H 1.08996 * 110.03996 * 218.50045 * 13 12 10 39 39 H 1.09001 * 109.81727 * 97.18344 * 13 12 10 40 40 H 0.96996 * 119.99502 * 180.02562 * 18 17 15 41 41 H 1.09004 * 109.63185 * 112.22227 * 25 7 5 42 42 H 1.09000 * 109.72898 * 351.15903 * 25 7 5 43 43 H 1.07994 * 124.59085 * 180.27861 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2631 1.0914 0.0000 4 6 3.6777 0.8002 -0.0041 5 6 4.7201 1.8394 -0.0091 6 8 4.5159 2.9031 -0.5627 7 7 5.9009 1.6123 0.5998 8 6 6.9850 2.5910 0.4727 9 6 7.6032 2.8997 1.8477 10 6 7.9602 1.5701 2.4913 11 1 8.6271 0.9926 1.8512 12 6 8.5037 1.6514 3.9267 13 6 8.1095 0.2614 4.4977 14 7 6.9894 -0.2452 3.6709 15 6 6.4020 -1.4785 3.7664 16 1 5.5843 -1.7394 3.1110 17 6 6.8576 -2.3934 4.7057 18 7 7.8545 -2.0756 5.5043 19 14 6.0614 -4.0786 4.8307 20 1 4.9392 -4.0250 5.8017 21 1 5.5444 -4.4819 3.4984 22 1 7.0679 -5.0686 5.2916 23 6 6.6258 0.8147 2.7427 24 1 5.9105 1.4863 3.2175 25 6 6.1015 0.3931 1.3822 26 6 3.9477 -0.5328 0.0030 27 16 2.5064 -1.4427 0.0077 28 1 -0.3633 -1.0276 0.0058 29 1 -0.3633 0.5189 0.8869 30 1 -0.3633 0.5087 -0.8929 31 1 1.8615 2.0940 -0.0004 32 1 6.5895 3.5110 0.0421 33 1 7.7554 2.1890 -0.1853 34 1 6.8811 3.4303 2.4683 35 1 8.5015 3.5045 1.7230 36 1 9.5856 1.7833 3.9271 37 1 8.0151 2.4509 4.4838 38 1 7.7901 0.3607 5.5351 39 1 8.9579 -0.4196 4.4310 40 1 8.1730 -2.7151 6.1604 41 1 6.8291 -0.2469 0.8830 42 1 5.1533 -0.1329 1.4935 43 1 4.9408 -0.9572 0.0058 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042268368.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:41 Heat of formation + Delta-G solvation = 15.998545 kcal Electronic energy + Delta-G solvation = -25529.723116 eV Core-core repulsion = 22087.679532 eV Total energy + Delta-G solvation = -3442.043584 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.77758 -39.89709 -38.13519 -36.80215 -34.87370 -33.55108 -32.52505 -30.85714 -30.16271 -27.73173 -26.85618 -26.11408 -24.61179 -23.27973 -21.83079 -21.54151 -20.79693 -20.12461 -18.75736 -18.09709 -17.82422 -16.90318 -16.81540 -16.24590 -16.00123 -15.72233 -15.46083 -15.13329 -14.80183 -14.67513 -14.32257 -14.10945 -13.95113 -13.77011 -13.56998 -13.24137 -13.16200 -13.08236 -12.95201 -12.81931 -12.71903 -12.51565 -12.10323 -12.00122 -11.94712 -11.75157 -11.54427 -11.35330 -11.24184 -10.80123 -10.69812 -9.81312 -9.69619 -9.34906 -8.89719 -7.82562 -5.18184 -0.23107 0.54909 0.87146 1.00814 1.47877 1.49034 1.57130 1.81016 2.19318 2.51740 3.36391 3.37954 3.53808 3.78087 3.86549 3.91919 3.99533 4.12341 4.23075 4.26814 4.34370 4.36852 4.46883 4.49717 4.59872 4.65969 4.77829 4.83073 4.85660 4.87301 4.92585 5.00406 5.07499 5.12454 5.12944 5.17779 5.36144 5.44123 5.49145 5.58089 5.67070 5.78916 6.18712 6.25524 7.00911 7.09111 7.78263 8.46785 9.28838 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.010187 B = 0.005787 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.990024 B = 4837.047334 C = 7209.844804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.197 4.197 3 C -0.116 4.116 4 C -0.173 4.173 5 C 0.576 3.424 6 O -0.575 6.575 7 N -0.595 5.595 8 C 0.108 3.892 9 C -0.106 4.106 10 C -0.099 4.099 11 H 0.078 0.922 12 C -0.123 4.123 13 C 0.182 3.818 14 N -0.609 5.609 15 C -0.232 4.232 16 H 0.087 0.913 17 C -0.063 4.063 18 N -0.951 5.951 19 Si 0.967 3.033 20 H -0.290 1.290 21 H -0.261 1.261 22 H -0.298 1.298 23 C 0.148 3.852 24 H 0.007 0.993 25 C 0.108 3.892 26 C -0.221 4.221 27 S 0.220 5.780 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.149 0.851 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.060 0.940 35 H 0.108 0.892 36 H 0.084 0.916 37 H 0.065 0.935 38 H -0.001 1.001 39 H 0.025 0.975 40 H 0.245 0.755 41 H 0.075 0.925 42 H 0.093 0.907 43 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.332 5.014 -12.118 15.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.314 4.314 3 C -0.145 4.145 4 C -0.191 4.191 5 C 0.365 3.635 6 O -0.457 6.457 7 N -0.326 5.326 8 C -0.013 4.013 9 C -0.145 4.145 10 C -0.119 4.119 11 H 0.097 0.903 12 C -0.162 4.162 13 C 0.057 3.943 14 N -0.334 5.334 15 C -0.361 4.361 16 H 0.105 0.895 17 C -0.256 4.256 18 N -0.600 5.600 19 Si 0.796 3.204 20 H -0.217 1.217 21 H -0.185 1.185 22 H -0.224 1.224 23 C 0.039 3.961 24 H 0.025 0.975 25 C -0.016 4.016 26 C -0.359 4.359 27 S 0.487 5.513 28 H 0.101 0.899 29 H 0.103 0.897 30 H 0.109 0.891 31 H 0.167 0.833 32 H 0.108 0.892 33 H 0.100 0.900 34 H 0.078 0.922 35 H 0.126 0.874 36 H 0.102 0.898 37 H 0.084 0.916 38 H 0.017 0.983 39 H 0.043 0.957 40 H 0.054 0.946 41 H 0.093 0.907 42 H 0.111 0.889 43 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -8.711 3.813 -12.287 15.537 hybrid contribution 0.474 0.473 0.805 1.047 sum -8.238 4.286 -11.482 14.767 Atomic orbital electron populations 1.20468 0.85055 1.04224 1.04184 1.24798 1.02050 0.95539 1.08985 1.20975 0.89831 1.00310 1.03365 1.20205 0.94625 0.92657 1.11598 1.17995 0.81526 0.86134 0.77840 1.90709 1.80390 1.27023 1.47565 1.47746 1.13172 1.22217 1.49450 1.21776 0.88671 0.92834 0.98056 1.21732 1.01644 0.96213 0.94892 1.22203 0.96455 0.96938 0.96272 0.90336 1.22605 1.01149 0.96827 0.95578 1.21344 0.89585 0.91367 0.91961 1.44400 1.38426 1.12229 1.38365 1.19368 1.12230 0.89319 1.15180 0.89533 1.25570 0.99419 1.01994 0.98633 1.70160 1.29820 1.35584 1.24429 0.85234 0.77057 0.79726 0.78380 1.21747 1.18511 1.22439 1.21088 0.95462 0.89977 0.89528 0.97508 1.21839 1.02544 0.85929 0.91283 1.26067 1.06165 0.97531 1.06183 1.82936 0.92339 1.07653 1.68399 0.89912 0.89654 0.89102 0.83313 0.89237 0.89963 0.92165 0.87411 0.89762 0.91629 0.98256 0.95667 0.94555 0.90720 0.88938 0.80453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.16 10.35 71.24 0.74 -0.42 16 2 C -0.20 -4.31 6.44 24.51 0.16 -4.15 16 3 C -0.12 -3.13 10.10 22.67 0.23 -2.90 16 4 C -0.17 -5.27 5.42 -19.87 -0.11 -5.38 16 5 C 0.58 19.60 7.50 86.59 0.65 20.24 16 6 O -0.58 -22.06 16.31 -4.14 -0.07 -22.13 16 7 N -0.59 -18.75 2.98 -826.91 -2.46 -21.21 16 8 C 0.11 2.89 6.35 86.66 0.55 3.44 16 9 C -0.11 -2.73 5.76 30.56 0.18 -2.56 16 10 C -0.10 -3.21 2.58 -10.08 -0.03 -3.24 16 11 H 0.08 2.56 8.12 -2.39 -0.02 2.54 16 12 C -0.12 -4.35 6.57 31.64 0.21 -4.14 16 13 C 0.18 8.78 5.46 86.87 0.47 9.25 16 14 N -0.61 -29.87 3.34 -669.21 -2.24 -32.11 16 15 C -0.23 -12.27 9.88 84.03 0.83 -11.44 16 16 H 0.09 4.28 7.43 -2.91 -0.02 4.26 16 17 C -0.06 -3.47 5.49 84.86 0.47 -3.00 16 18 N -0.95 -55.94 10.44 21.65 0.23 -55.72 16 19 Si 0.97 44.03 29.55 68.60 2.03 46.06 16 20 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 21 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 22 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 23 C 0.15 5.82 2.80 45.59 0.13 5.95 16 24 H 0.01 0.32 7.94 -2.39 -0.02 0.30 16 25 C 0.11 3.68 4.04 86.02 0.35 4.02 16 26 C -0.22 -6.06 8.35 67.30 0.56 -5.50 16 27 S 0.22 4.90 23.00 -56.49 -1.30 3.60 16 28 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 32 H 0.09 2.45 6.92 -2.39 -0.02 2.43 16 33 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 34 H 0.06 1.66 7.99 -2.39 -0.02 1.65 16 35 H 0.11 2.11 8.14 -2.38 -0.02 2.09 16 36 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 37 H 0.06 2.19 8.13 -2.39 -0.02 2.17 16 38 H 0.00 -0.05 7.79 -2.39 -0.02 -0.06 16 39 H 0.03 1.35 7.19 -2.39 -0.02 1.33 16 40 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 41 H 0.07 2.50 8.08 -2.38 -0.02 2.48 16 42 H 0.09 3.24 4.15 -2.39 -0.01 3.23 16 43 H 0.18 4.75 6.17 -2.91 -0.02 4.73 16 Total: -1.00 -67.80 349.14 2.58 -65.23 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 1.01 Total: 16.09 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: 5.38 Total: 0.19 kcal Atomic # 7 Polarization: -104.56 SS G_CDS: -4.48 Total: -109.04 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -0.07 Total: -22.13 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: 4.90 SS G_CDS: -1.30 Total: 3.60 kcal Total: -67.80 2.58 -65.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042268368.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.227 kcal (2) G-P(sol) polarization free energy of solvation -67.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds