Wall clock time and date at job start Tue Mar 31 2020 12:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86803 * 120.00165 * 2 1 4 4 H 1.48500 * 109.46848 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47098 * 300.00052 * 3 2 1 6 6 H 1.48497 * 109.46847 * 60.00199 * 3 2 1 7 7 C 1.38816 * 119.99867 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00036 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00226 * 359.97438 * 7 2 1 10 10 C 1.48391 * 126.56043 * 0.02562 * 9 7 2 11 11 C 1.55467 * 106.97521 * 174.47593 * 10 9 7 12 12 C 1.53426 * 101.67462 * 337.39994 * 11 10 9 13 13 H 1.08999 * 111.14836 * 282.01445 * 12 11 10 14 14 C 1.45024 * 126.56481 * 180.02562 * 9 7 2 15 15 H 1.09005 * 108.70570 * 95.89244 * 14 9 7 16 16 C 1.51081 * 119.18793 * 331.21395 * 14 9 7 17 17 C 1.53863 * 107.34317 * 176.11004 * 16 14 9 18 18 C 1.52715 * 111.52835 * 56.92398 * 17 16 14 19 19 N 1.45727 * 116.37907 * 152.72497 * 12 11 10 20 20 C 1.34772 * 122.22655 * 9.86862 * 19 12 11 21 21 O 1.21283 * 120.00484 * 0.02562 * 20 19 12 22 22 C 1.50700 * 119.99796 * 179.97438 * 20 19 12 23 23 C 1.50702 * 109.46901 * 180.02562 * 22 20 19 24 24 C 1.33387 * 125.20301 * 90.00231 * 23 22 20 25 25 C 1.38429 * 114.92089 * 179.97438 * 24 23 22 26 26 C 1.33381 * 114.92119 * 0.02562 * 25 24 23 27 27 S 1.75887 * 109.59543 * 359.75228 * 26 25 24 28 28 H 0.97004 * 120.00223 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.95636 * 55.09419 * 10 9 7 30 30 H 1.09004 * 109.98795 * 293.87760 * 10 9 7 31 31 H 1.09003 * 110.98501 * 219.30157 * 11 10 9 32 32 H 1.09004 * 111.02022 * 95.51080 * 11 10 9 33 33 H 1.09003 * 109.88540 * 295.56751 * 16 14 9 34 34 H 1.09004 * 109.88043 * 56.65188 * 16 14 9 35 35 H 1.09006 * 109.06803 * 296.39796 * 17 16 14 36 36 H 1.08997 * 109.01838 * 177.41896 * 17 16 14 37 37 H 1.08997 * 109.16693 * 191.06721 * 18 17 16 38 38 H 1.08998 * 109.11575 * 71.85005 * 18 17 16 39 39 H 1.08995 * 109.47344 * 299.99982 * 22 20 19 40 40 H 1.08998 * 109.47078 * 60.00660 * 22 20 19 41 41 H 1.07999 * 122.53992 * 359.97438 * 24 23 22 42 42 H 1.08000 * 122.53673 * 179.97438 * 25 24 23 43 43 H 1.08000 * 125.20521 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1487 -2.5576 -0.0005 11 6 -0.4305 -4.0798 -0.1437 12 6 0.8710 -4.5775 -0.7860 13 1 0.8949 -4.3513 -1.8520 14 6 1.9023 -3.7187 -0.0005 15 1 1.9441 -4.0816 1.0265 16 6 3.2560 -3.9349 -0.6357 17 6 3.6451 -5.4043 -0.3971 18 6 2.5920 -6.3603 -0.9531 19 7 1.2342 -5.9639 -0.5224 20 6 0.3890 -6.8272 0.0747 21 8 -0.7162 -6.4588 0.4119 22 6 0.8168 -8.2508 0.3225 23 6 -0.3026 -9.0016 0.9967 24 6 -1.2676 -9.6727 0.3660 25 6 -2.1897 -10.2864 1.1963 26 6 -1.9738 -10.1132 2.5010 27 16 -0.5327 -9.1326 2.7355 28 1 -0.4851 0.8401 -0.0004 29 1 -0.5852 -2.0177 -0.8407 30 1 -0.5662 -2.1883 0.9362 31 1 -1.2828 -4.2591 -0.7991 32 1 -0.5863 -4.5420 0.8312 33 1 3.1995 -3.7355 -1.7058 34 1 3.9917 -3.2768 -0.1734 35 1 3.7510 -5.5751 0.6743 36 1 4.5993 -5.6027 -0.8851 37 1 2.8003 -7.3689 -0.5963 38 1 2.6393 -6.3493 -2.0420 39 1 1.0543 -8.7295 -0.6275 40 1 1.6981 -8.2590 0.9639 41 1 -1.3251 -9.7327 -0.7108 42 1 -3.0213 -10.8611 0.8162 43 1 -2.5874 -10.5173 3.2926 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049290282.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:57 Heat of formation + Delta-G solvation = 38.764950 kcal Electronic energy + Delta-G solvation = -25266.342525 eV Core-core repulsion = 21825.286167 eV Total energy + Delta-G solvation = -3441.056359 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.36165 -38.26872 -37.30642 -35.42239 -32.66008 -32.57460 -31.75724 -28.99468 -28.25588 -27.16708 -24.56135 -24.41708 -23.16827 -21.50225 -20.87797 -19.70596 -19.38894 -18.76054 -17.18361 -16.84234 -16.12163 -15.76628 -15.36523 -15.24875 -14.72220 -14.22766 -14.13026 -13.73963 -13.60814 -13.26114 -12.93568 -12.78130 -12.53284 -12.45825 -12.33339 -12.22776 -11.82890 -11.64555 -11.52947 -11.11402 -10.85514 -10.78704 -10.70219 -10.51892 -10.43120 -10.06123 -9.97940 -9.81749 -9.60074 -9.08030 -8.66905 -8.55195 -8.47685 -8.20802 -6.80815 -5.68267 -3.02558 0.93455 1.59527 1.96341 2.67159 2.83114 3.22495 3.41033 3.45960 3.48781 4.49946 4.52162 4.61680 4.85782 4.95659 5.00801 5.09231 5.22806 5.27448 5.37912 5.44834 5.47319 5.50714 5.61780 5.66941 5.77565 5.88269 6.00358 6.03932 6.09873 6.21401 6.26905 6.30473 6.40042 6.42047 6.57690 6.73651 6.80450 6.91910 7.20855 7.60634 7.66925 7.72921 7.86569 8.26921 8.44214 9.21149 9.85148 10.53615 11.43753 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.022400 B = 0.003303 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.678784 B = 8473.897632 C = 9119.884841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.008 4.008 3 Si 0.910 3.090 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.226 4.226 8 H 0.079 0.921 9 N -0.593 5.593 10 C 0.172 3.828 11 C -0.129 4.129 12 C 0.117 3.883 13 H 0.079 0.921 14 C 0.159 3.841 15 H 0.016 0.984 16 C -0.116 4.116 17 C -0.130 4.130 18 C 0.110 3.890 19 N -0.600 5.600 20 C 0.515 3.485 21 O -0.519 6.519 22 C -0.072 4.072 23 C -0.152 4.152 24 C -0.132 4.132 25 C -0.133 4.133 26 C -0.218 4.218 27 S 0.109 5.891 28 H 0.252 0.748 29 H 0.056 0.944 30 H 0.039 0.961 31 H 0.059 0.941 32 H 0.081 0.919 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.108 0.892 40 H 0.101 0.899 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.968 -21.976 -0.245 22.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.354 4.354 8 H 0.097 0.903 9 N -0.317 5.317 10 C 0.047 3.953 11 C -0.167 4.167 12 C 0.012 3.988 13 H 0.097 0.903 14 C 0.049 3.951 15 H 0.034 0.966 16 C -0.155 4.155 17 C -0.169 4.169 18 C -0.013 4.013 19 N -0.334 5.334 20 C 0.302 3.698 21 O -0.394 6.394 22 C -0.114 4.114 23 C -0.269 4.269 24 C -0.162 4.162 25 C -0.163 4.163 26 C -0.354 4.354 27 S 0.372 5.628 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.127 0.873 40 H 0.119 0.881 41 H 0.154 0.846 42 H 0.155 0.845 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 3.068 -21.004 1.241 21.263 hybrid contribution -0.291 0.419 -1.263 1.363 sum 2.777 -20.585 -0.022 20.771 Atomic orbital electron populations 1.69960 1.04883 1.24914 1.56861 1.24809 0.95668 0.97625 1.02310 0.86078 0.78674 0.83970 0.77226 1.20549 1.21802 1.21792 1.19031 0.90339 0.82222 1.43815 0.90327 1.44092 1.01820 0.99336 1.86492 1.21745 0.83599 0.88851 1.01059 1.22956 0.94553 0.97816 1.01417 1.22383 0.98727 0.78486 0.99161 0.90287 1.20754 0.91416 0.87221 0.95666 0.96634 1.21437 0.98608 0.94145 1.01280 1.21903 0.97639 0.95792 1.01534 1.21720 0.81744 0.98246 0.99594 1.48002 1.14338 1.11496 1.59583 1.20270 0.85018 0.86530 0.78025 1.90737 1.20666 1.77672 1.50350 1.20233 0.96289 0.92910 1.01920 1.23815 1.02133 1.04773 0.96221 1.20030 0.94878 1.00221 1.01058 1.20097 1.01039 1.02726 0.92469 1.25570 1.02702 1.06658 1.00430 1.84267 1.23833 1.49965 1.04700 0.93788 0.92606 0.94306 0.92188 0.90011 0.91792 0.91482 0.91831 0.90887 0.90430 0.91447 0.87346 0.88121 0.84585 0.84488 0.82099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.40 10.46 55.49 0.58 -26.82 16 2 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 3 Si 0.91 22.18 29.55 -169.99 -5.02 17.15 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 7 C -0.23 -6.25 9.94 -15.06 -0.15 -6.40 16 8 H 0.08 2.08 7.31 -52.48 -0.38 1.70 16 9 N -0.59 -15.27 3.35 -163.27 -0.55 -15.81 16 10 C 0.17 4.40 5.47 -1.69 -0.01 4.39 16 11 C -0.13 -2.78 5.01 -25.20 -0.13 -2.90 16 12 C 0.12 2.21 3.33 -66.80 -0.22 1.98 16 13 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 14 C 0.16 3.30 2.58 -68.36 -0.18 3.12 16 15 H 0.02 0.36 8.03 -51.93 -0.42 -0.05 16 16 C -0.12 -1.95 5.45 -27.25 -0.15 -2.09 16 17 C -0.13 -1.56 5.92 -26.43 -0.16 -1.71 16 18 C 0.11 1.20 6.32 -3.44 -0.02 1.18 16 19 N -0.60 -9.04 2.91 -163.99 -0.48 -9.52 16 20 C 0.52 7.87 7.68 -10.99 -0.08 7.78 16 21 O -0.52 -9.97 12.86 5.56 0.07 -9.90 16 22 C -0.07 -0.77 4.61 -29.03 -0.13 -0.91 16 23 C -0.15 -1.83 5.00 -36.00 -0.18 -2.01 16 24 C -0.13 -1.50 10.05 -41.21 -0.41 -1.91 16 25 C -0.13 -1.39 10.18 -41.21 -0.42 -1.81 16 26 C -0.22 -2.28 11.23 29.03 0.33 -1.95 16 27 S 0.11 1.27 23.33 -107.50 -2.51 -1.23 16 28 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.06 1.55 7.19 -51.93 -0.37 1.18 16 30 H 0.04 1.09 7.81 -51.93 -0.41 0.69 16 31 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.08 1.86 6.20 -51.93 -0.32 1.54 16 33 H 0.06 1.08 8.12 -51.93 -0.42 0.65 16 34 H 0.07 1.18 7.70 -51.93 -0.40 0.78 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.60 6.18 -51.93 -0.32 0.28 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.11 0.87 8.02 -51.93 -0.42 0.46 16 40 H 0.10 0.91 7.75 -51.93 -0.40 0.51 16 41 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 42 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 43 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 349.56 15.07 5.27 5.27 Total: -1.00 -33.12 349.56 -11.03 -44.15 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -6.38 Total: 0.27 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -2.01 Total: -3.55 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: -0.44 Total: -52.15 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.07 Total: -9.90 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Atomic # 16 Polarization: 1.27 SS G_CDS: -2.51 Total: -1.23 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.12 -11.03 -44.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049290282.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.918 kcal (2) G-P(sol) polarization free energy of solvation -33.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds