Wall clock time and date at job start Tue Mar 31 2020 12:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86803 * 120.00165 * 2 1 4 4 H 1.48500 * 109.46848 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47098 * 300.00052 * 3 2 1 6 6 H 1.48497 * 109.46847 * 60.00199 * 3 2 1 7 7 C 1.38816 * 119.99867 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00036 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00226 * 359.97438 * 7 2 1 10 10 C 1.48391 * 126.56043 * 0.02562 * 9 7 2 11 11 C 1.55467 * 106.97521 * 174.47593 * 10 9 7 12 12 C 1.53426 * 101.67462 * 337.39994 * 11 10 9 13 13 H 1.08999 * 111.14836 * 282.01445 * 12 11 10 14 14 C 1.45024 * 126.56481 * 180.02562 * 9 7 2 15 15 H 1.09005 * 108.70570 * 95.89244 * 14 9 7 16 16 C 1.51081 * 119.18793 * 331.21395 * 14 9 7 17 17 C 1.53863 * 107.34317 * 176.11004 * 16 14 9 18 18 C 1.52715 * 111.52835 * 56.92398 * 17 16 14 19 19 N 1.45727 * 116.37907 * 152.72497 * 12 11 10 20 20 C 1.34772 * 122.22655 * 9.86862 * 19 12 11 21 21 O 1.21283 * 120.00484 * 0.02562 * 20 19 12 22 22 C 1.50700 * 119.99796 * 179.97438 * 20 19 12 23 23 C 1.50702 * 109.46901 * 180.02562 * 22 20 19 24 24 C 1.33387 * 125.20301 * 90.00231 * 23 22 20 25 25 C 1.38429 * 114.92089 * 179.97438 * 24 23 22 26 26 C 1.33381 * 114.92119 * 0.02562 * 25 24 23 27 27 S 1.75887 * 109.59543 * 359.75228 * 26 25 24 28 28 H 0.97004 * 120.00223 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.95636 * 55.09419 * 10 9 7 30 30 H 1.09004 * 109.98795 * 293.87760 * 10 9 7 31 31 H 1.09003 * 110.98501 * 219.30157 * 11 10 9 32 32 H 1.09004 * 111.02022 * 95.51080 * 11 10 9 33 33 H 1.09003 * 109.88540 * 295.56751 * 16 14 9 34 34 H 1.09004 * 109.88043 * 56.65188 * 16 14 9 35 35 H 1.09006 * 109.06803 * 296.39796 * 17 16 14 36 36 H 1.08997 * 109.01838 * 177.41896 * 17 16 14 37 37 H 1.08997 * 109.16693 * 191.06721 * 18 17 16 38 38 H 1.08998 * 109.11575 * 71.85005 * 18 17 16 39 39 H 1.08995 * 109.47344 * 299.99982 * 22 20 19 40 40 H 1.08998 * 109.47078 * 60.00660 * 22 20 19 41 41 H 1.07999 * 122.53992 * 359.97438 * 24 23 22 42 42 H 1.08000 * 122.53673 * 179.97438 * 25 24 23 43 43 H 1.08000 * 125.20521 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1487 -2.5576 -0.0005 11 6 -0.4305 -4.0798 -0.1437 12 6 0.8710 -4.5775 -0.7860 13 1 0.8949 -4.3513 -1.8520 14 6 1.9023 -3.7187 -0.0005 15 1 1.9441 -4.0816 1.0265 16 6 3.2560 -3.9349 -0.6357 17 6 3.6451 -5.4043 -0.3971 18 6 2.5920 -6.3603 -0.9531 19 7 1.2342 -5.9639 -0.5224 20 6 0.3890 -6.8272 0.0747 21 8 -0.7162 -6.4588 0.4119 22 6 0.8168 -8.2508 0.3225 23 6 -0.3026 -9.0016 0.9967 24 6 -1.2676 -9.6727 0.3660 25 6 -2.1897 -10.2864 1.1963 26 6 -1.9738 -10.1132 2.5010 27 16 -0.5327 -9.1326 2.7355 28 1 -0.4851 0.8401 -0.0004 29 1 -0.5852 -2.0177 -0.8407 30 1 -0.5662 -2.1883 0.9362 31 1 -1.2828 -4.2591 -0.7991 32 1 -0.5863 -4.5420 0.8312 33 1 3.1995 -3.7355 -1.7058 34 1 3.9917 -3.2768 -0.1734 35 1 3.7510 -5.5751 0.6743 36 1 4.5993 -5.6027 -0.8851 37 1 2.8003 -7.3689 -0.5963 38 1 2.6393 -6.3493 -2.0420 39 1 1.0543 -8.7295 -0.6275 40 1 1.6981 -8.2590 0.9639 41 1 -1.3251 -9.7327 -0.7108 42 1 -3.0213 -10.8611 0.8162 43 1 -2.5874 -10.5173 3.2926 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049290282.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:56 Heat of formation + Delta-G solvation = 18.874930 kcal Electronic energy + Delta-G solvation = -25267.205021 eV Core-core repulsion = 21825.286167 eV Total energy + Delta-G solvation = -3441.918855 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.68125 -39.51145 -38.35431 -36.90503 -34.37646 -33.86187 -33.01786 -30.80360 -29.70916 -28.15450 -26.38882 -25.79129 -24.12737 -22.82841 -22.42944 -21.46406 -20.34913 -19.86481 -18.62792 -18.06401 -17.37468 -17.16485 -16.67311 -16.48272 -16.23784 -15.78365 -15.40184 -15.20781 -15.00609 -14.40782 -14.28693 -13.92939 -13.77118 -13.62905 -13.44891 -13.36211 -13.22587 -13.14081 -12.87140 -12.75217 -12.43185 -12.22318 -12.06575 -11.93805 -11.75814 -11.70096 -11.62045 -11.55670 -11.40293 -10.79033 -10.38266 -9.52627 -9.51639 -9.33710 -8.91956 -7.85078 -5.22225 0.10088 0.77819 1.14586 1.44891 1.46574 1.56729 1.69263 1.81475 2.12669 2.49863 3.33682 3.36563 3.60288 3.74411 3.94529 4.03457 4.10680 4.13471 4.24226 4.27866 4.29420 4.36721 4.52463 4.57286 4.60074 4.71076 4.72401 4.76224 4.86001 4.93451 5.04752 5.11777 5.17870 5.24199 5.29998 5.41144 5.45355 5.48249 5.58485 5.62762 5.64025 5.72851 6.17068 6.56806 7.04214 7.27417 7.74660 8.45013 9.26949 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.022400 B = 0.003303 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.678784 B = 8473.897632 C = 9119.884841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.071 4.071 3 Si 0.980 3.020 4 H -0.260 1.260 5 H -0.292 1.292 6 H -0.296 1.296 7 C -0.232 4.232 8 H 0.090 0.910 9 N -0.613 5.613 10 C 0.182 3.818 11 C -0.111 4.111 12 C 0.134 3.866 13 H 0.080 0.920 14 C 0.152 3.848 15 H -0.004 1.004 16 C -0.112 4.112 17 C -0.121 4.121 18 C 0.103 3.897 19 N -0.601 5.601 20 C 0.509 3.491 21 O -0.568 6.568 22 C -0.061 4.061 23 C -0.168 4.168 24 C -0.137 4.137 25 C -0.142 4.142 26 C -0.218 4.218 27 S 0.071 5.929 28 H 0.246 0.754 29 H 0.025 0.975 30 H -0.004 1.004 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.112 0.888 37 H 0.123 0.877 38 H 0.088 0.912 39 H 0.147 0.853 40 H 0.124 0.876 41 H 0.151 0.849 42 H 0.160 0.840 43 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.396 -24.771 -1.428 25.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.264 4.264 3 Si 0.808 3.192 4 H -0.184 1.184 5 H -0.219 1.219 6 H -0.224 1.224 7 C -0.360 4.360 8 H 0.108 0.892 9 N -0.337 5.337 10 C 0.057 3.943 11 C -0.149 4.149 12 C 0.028 3.972 13 H 0.098 0.902 14 C 0.044 3.956 15 H 0.014 0.986 16 C -0.151 4.151 17 C -0.160 4.160 18 C -0.018 4.018 19 N -0.334 5.334 20 C 0.298 3.702 21 O -0.447 6.447 22 C -0.102 4.102 23 C -0.286 4.286 24 C -0.168 4.168 25 C -0.173 4.173 26 C -0.353 4.353 27 S 0.335 5.665 28 H 0.055 0.945 29 H 0.043 0.957 30 H 0.014 0.986 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.130 0.870 37 H 0.141 0.859 38 H 0.107 0.893 39 H 0.165 0.835 40 H 0.142 0.858 41 H 0.169 0.831 42 H 0.177 0.823 43 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 5.562 -23.858 0.049 24.498 hybrid contribution -1.102 1.239 -0.850 1.864 sum 4.460 -22.619 -0.801 23.068 Atomic orbital electron populations 1.70195 1.06577 1.25177 1.58523 1.25721 0.96547 1.01266 1.02838 0.84984 0.78377 0.79297 0.76536 1.18431 1.21894 1.22356 1.19462 0.91034 0.83145 1.42404 0.89244 1.44363 1.01992 1.01043 1.86343 1.21436 0.84034 0.91324 0.97509 1.22656 0.96447 0.94678 1.01157 1.21926 0.95770 0.81154 0.98340 0.90236 1.20953 0.94494 0.84863 0.95288 0.98624 1.21427 0.95335 0.97799 1.00540 1.21896 0.99746 0.92131 1.02188 1.22124 0.78637 0.99973 1.01031 1.48104 1.16282 1.09458 1.59541 1.21131 0.84283 0.88165 0.76663 1.90717 1.22945 1.78847 1.52156 1.20285 0.96452 0.89254 1.04175 1.24033 1.03148 1.05540 0.95859 1.20365 0.94622 0.99770 1.02028 1.20436 1.01592 1.02801 0.92447 1.25881 1.02115 1.06033 1.01258 1.84362 1.25334 1.50996 1.05850 0.94519 0.95684 0.98560 0.92076 0.91301 0.91744 0.92772 0.91941 0.86973 0.85949 0.89346 0.83545 0.85784 0.83113 0.82256 0.80046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.93 10.46 21.65 0.23 -59.70 16 2 C -0.07 -4.16 5.49 84.86 0.47 -3.69 16 3 Si 0.98 46.56 29.55 68.60 2.03 48.59 16 4 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 6 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 7 C -0.23 -13.12 9.94 84.04 0.84 -12.29 16 8 H 0.09 4.75 7.31 -2.91 -0.02 4.73 16 9 N -0.61 -32.76 3.35 -670.46 -2.25 -35.00 16 10 C 0.18 9.97 5.47 86.86 0.48 10.44 16 11 C -0.11 -4.99 5.01 31.59 0.16 -4.83 16 12 C 0.13 5.02 3.33 46.14 0.15 5.17 16 13 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 14 C 0.15 6.35 2.58 45.50 0.12 6.47 16 15 H 0.00 -0.17 8.03 -2.38 -0.02 -0.19 16 16 C -0.11 -3.57 5.45 30.26 0.16 -3.40 16 17 C -0.12 -2.39 5.92 30.79 0.18 -2.21 16 18 C 0.10 1.74 6.32 86.02 0.54 2.28 16 19 N -0.60 -16.60 2.91 -791.14 -2.30 -18.90 16 20 C 0.51 14.49 7.68 87.66 0.67 15.17 16 21 O -0.57 -21.77 12.86 -3.04 -0.04 -21.81 16 22 C -0.06 -1.08 4.61 29.10 0.13 -0.95 16 23 C -0.17 -3.68 5.00 24.59 0.12 -3.56 16 24 C -0.14 -2.81 10.05 21.22 0.21 -2.60 16 25 C -0.14 -2.70 10.18 21.22 0.22 -2.48 16 26 C -0.22 -4.22 11.23 66.72 0.75 -3.47 16 27 S 0.07 1.60 23.33 -56.49 -1.32 0.29 16 28 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 29 H 0.02 1.49 7.19 -2.39 -0.02 1.48 16 30 H 0.00 -0.24 7.81 -2.38 -0.02 -0.26 16 31 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 32 H 0.07 3.30 6.20 -2.39 -0.01 3.28 16 33 H 0.06 2.03 8.12 -2.39 -0.02 2.01 16 34 H 0.05 1.84 7.70 -2.38 -0.02 1.82 16 35 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 36 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.12 1.06 6.18 -2.39 -0.01 1.05 16 38 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.15 1.52 8.02 -2.39 -0.02 1.50 16 40 H 0.12 1.67 7.75 -2.39 -0.02 1.65 16 41 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 42 H 0.16 2.20 8.06 -2.91 -0.02 2.17 16 43 H 0.18 2.57 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -78.32 349.56 2.55 -75.77 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: 1.00 Total: 10.72 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: 5.21 Total: 0.05 kcal Atomic # 7 Polarization: -109.28 SS G_CDS: -4.32 Total: -113.60 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.04 Total: -21.81 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Atomic # 16 Polarization: 1.60 SS G_CDS: -1.32 Total: 0.29 kcal Total: -78.32 2.55 -75.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049290282.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.642 kcal (2) G-P(sol) polarization free energy of solvation -78.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds