Wall clock time and date at job start Tue Mar 31 2020 12:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33814 * 124.52275 * 2 1 4 4 C 1.37473 * 115.10173 * 179.77070 * 3 2 1 5 5 C 1.36647 * 113.29636 * 0.45286 * 4 3 2 6 6 C 1.46582 * 125.45909 * 179.83634 * 5 4 3 7 7 O 1.21699 * 119.99627 * 42.66135 * 6 5 4 8 8 N 1.34768 * 120.00256 * 222.65699 * 6 5 4 9 9 C 1.47853 * 122.23122 * 355.62313 * 8 6 5 10 10 C 1.52717 * 111.02379 * 127.51895 * 9 8 6 11 11 C 1.53750 * 111.58584 * 48.54475 * 10 9 8 12 12 C 1.51084 * 107.31755 * 303.05073 * 11 10 9 13 13 H 1.08994 * 108.30069 * 308.76729 * 12 11 10 14 14 C 1.45732 * 122.23019 * 175.59730 * 8 6 5 15 15 H 1.08999 * 111.07222 * 118.63174 * 14 8 6 16 16 C 1.53430 * 116.36954 * 350.12233 * 14 8 6 17 17 C 1.55468 * 101.67359 * 207.28387 * 16 14 8 18 18 N 1.45022 * 119.19187 * 183.89822 * 12 11 10 19 19 C 1.36933 * 126.56479 * 28.74450 * 18 12 11 20 20 H 1.08002 * 119.99696 * 0.02833 * 19 18 12 21 21 C 1.38803 * 120.00202 * 180.02562 * 19 18 12 22 22 N 1.31619 * 120.00278 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 120.00135 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.46674 * 60.00349 * 23 21 19 25 25 H 1.48503 * 109.47178 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47292 * 300.00467 * 23 21 19 27 27 S 1.70620 * 124.52227 * 180.02562 * 2 1 3 28 28 H 1.09006 * 109.47089 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47301 * 300.00077 * 1 2 3 30 30 H 1.09002 * 109.47345 * 60.00513 * 1 2 3 31 31 H 1.07996 * 122.44958 * 0.03999 * 3 2 1 32 32 H 1.08000 * 123.35122 * 180.27191 * 4 3 2 33 33 H 1.09003 * 109.16066 * 247.90448 * 9 8 6 34 34 H 1.09000 * 109.15987 * 7.14039 * 9 8 6 35 35 H 1.09007 * 109.06541 * 169.03308 * 10 9 8 36 36 H 1.08997 * 109.06803 * 287.97308 * 10 9 8 37 37 H 1.09006 * 109.89664 * 183.59982 * 11 10 9 38 38 H 1.08996 * 109.94981 * 62.53919 * 11 10 9 39 39 H 1.09008 * 110.98596 * 325.38131 * 16 14 8 40 40 H 1.09004 * 110.98727 * 89.14888 * 16 14 8 41 41 H 1.09001 * 109.96280 * 141.97667 * 17 16 14 42 42 H 1.09001 * 109.96162 * 263.22053 * 17 16 14 43 43 H 0.96995 * 120.00691 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2653 1.1025 0.0000 4 6 3.6215 0.8775 0.0050 5 6 3.9492 -0.4491 -0.0008 6 6 5.3123 -0.9883 -0.0010 7 8 6.1619 -0.4948 0.7172 8 7 5.6247 -2.0305 -0.7963 9 6 4.6114 -2.7279 -1.6166 10 6 5.0503 -2.8093 -3.0771 11 6 6.4962 -3.3160 -3.2058 12 6 7.3726 -2.3836 -2.4025 13 1 7.1545 -1.3605 -2.7083 14 6 6.9838 -2.5448 -0.9055 15 1 7.0377 -3.5827 -0.5771 16 6 8.0866 -1.7000 -0.2541 17 6 9.3237 -2.0787 -1.1161 18 7 8.8099 -2.5767 -2.4161 19 6 9.5509 -3.1162 -3.4334 20 1 9.0644 -3.4467 -4.3392 21 6 10.9271 -3.2381 -3.3005 22 7 11.5199 -2.8357 -2.1964 23 14 11.9381 -3.9734 -4.6886 24 1 11.7674 -3.1520 -5.9141 25 1 13.3714 -3.9926 -4.3007 26 1 11.4790 -5.3603 -4.9545 27 16 2.4739 -1.4057 -0.0006 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8429 2.0964 0.0006 32 1 4.3549 1.6703 0.0099 33 1 4.4697 -3.7367 -1.2288 34 1 3.6676 -2.1859 -1.5565 35 1 4.3868 -3.4898 -3.6109 36 1 4.9787 -1.8188 -3.5262 37 1 6.8022 -3.3029 -4.2519 38 1 6.5720 -4.3288 -2.8102 39 1 7.8638 -0.6362 -0.3370 40 1 8.2335 -1.9859 0.7875 41 1 9.9493 -1.2005 -1.2753 42 1 9.8984 -2.8603 -0.6192 43 1 12.4816 -2.9212 -2.1033 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049298533.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:35 Heat of formation + Delta-G solvation = 36.866821 kcal Electronic energy + Delta-G solvation = -25355.911014 eV Core-core repulsion = 21914.772347 eV Total energy + Delta-G solvation = -3441.138668 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.35052 -38.37609 -37.31939 -35.44307 -32.63479 -32.52220 -31.88314 -29.13653 -28.29623 -27.32380 -24.66317 -24.44799 -23.49980 -21.58562 -21.47107 -20.14153 -19.55467 -18.48883 -17.54286 -16.50295 -16.14294 -15.59484 -15.30703 -14.96224 -14.65477 -14.39776 -14.10183 -13.99956 -13.63365 -13.43766 -13.27549 -12.96727 -12.54635 -12.42930 -12.25759 -12.25199 -11.99987 -11.79720 -11.57392 -11.29827 -10.96373 -10.82332 -10.65253 -10.51766 -10.46546 -10.10868 -10.01621 -9.83849 -9.59915 -9.20289 -8.75862 -8.59013 -8.55794 -8.24501 -6.81493 -5.68074 -3.02580 0.48231 1.25382 1.70136 2.36030 2.99880 3.30145 3.41903 3.46081 3.47681 4.48747 4.51388 4.58069 4.84007 4.89245 5.08205 5.16221 5.17656 5.27128 5.37028 5.39471 5.44002 5.56974 5.59504 5.64212 5.77279 5.85075 5.86078 5.99938 6.00775 6.10793 6.23282 6.25981 6.30744 6.39600 6.56288 6.72373 6.78631 6.89853 7.16903 7.58419 7.62655 7.69365 7.85533 8.26561 8.33945 9.21086 9.84928 10.53242 11.43922 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.029409 B = 0.003356 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.845389 B = 8341.593664 C = 8899.612014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.217 4.217 3 C -0.151 4.151 4 C -0.066 4.066 5 C -0.253 4.253 6 C 0.588 3.412 7 O -0.518 6.518 8 N -0.592 5.592 9 C 0.099 3.901 10 C -0.127 4.127 11 C -0.116 4.116 12 C 0.160 3.840 13 H 0.018 0.982 14 C 0.117 3.883 15 H 0.083 0.917 16 C -0.129 4.129 17 C 0.173 3.827 18 N -0.592 5.592 19 C -0.227 4.227 20 H 0.078 0.922 21 C -0.007 4.007 22 N -0.920 5.920 23 Si 0.911 3.089 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.285 1.285 27 S 0.209 5.791 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.141 0.859 32 H 0.149 0.851 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.040 0.960 42 H 0.057 0.943 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.308 2.989 3.405 23.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.336 4.336 3 C -0.181 4.181 4 C -0.098 4.098 5 C -0.373 4.373 6 C 0.375 3.625 7 O -0.395 6.395 8 N -0.325 5.325 9 C -0.025 4.025 10 C -0.166 4.166 11 C -0.155 4.155 12 C 0.051 3.949 13 H 0.035 0.965 14 C 0.013 3.987 15 H 0.100 0.900 16 C -0.168 4.168 17 C 0.048 3.952 18 N -0.317 5.317 19 C -0.355 4.355 20 H 0.096 0.904 21 C -0.203 4.203 22 N -0.567 5.567 23 Si 0.741 3.259 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.212 1.212 27 S 0.476 5.524 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.159 0.841 32 H 0.167 0.833 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.058 0.942 42 H 0.075 0.925 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -22.918 1.674 3.764 23.285 hybrid contribution 0.797 1.225 -0.780 1.657 sum -22.121 2.900 2.984 22.509 Atomic orbital electron populations 1.20343 0.87637 1.02923 1.03154 1.24346 1.01515 0.98556 1.09164 1.19881 0.92580 0.99500 1.06176 1.20654 0.96208 0.94933 0.98052 1.24688 0.97295 0.98063 1.17279 1.16960 0.85614 0.79775 0.80189 1.90850 1.48451 1.59604 1.40638 1.47914 1.10235 1.31618 1.42714 1.22066 0.91144 0.97373 0.91900 1.21852 0.97862 1.02074 0.94773 1.21426 0.92826 0.99711 1.01517 1.20741 0.86242 0.96265 0.91699 0.96489 1.22466 0.79465 0.97475 0.99248 0.89962 1.22950 0.94850 1.00114 0.98861 1.21746 0.91088 0.98407 0.83932 1.44075 0.99363 1.72333 1.15902 1.18938 0.88846 1.33529 0.94227 0.90394 1.24802 0.96531 1.01420 0.97566 1.69932 1.09157 1.52020 1.25596 0.86227 0.79438 0.78931 0.81305 1.21218 1.21619 1.21190 1.83107 0.93713 1.07430 1.68100 0.91443 0.90494 0.90420 0.84131 0.83325 0.91114 0.90057 0.90744 0.91744 0.91331 0.91678 0.90390 0.91852 0.94222 0.92457 0.93652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.49 10.33 36.00 0.37 -0.12 16 2 C -0.22 -1.97 6.28 -35.86 -0.23 -2.20 16 3 C -0.15 -1.49 9.99 -41.41 -0.41 -1.90 16 4 C -0.07 -0.82 10.22 -40.44 -0.41 -1.23 16 5 C -0.25 -3.46 5.62 -36.79 -0.21 -3.67 16 6 C 0.59 10.08 7.49 -12.90 -0.10 9.98 16 7 O -0.52 -10.57 14.03 5.19 0.07 -10.49 16 8 N -0.59 -9.74 2.91 -165.55 -0.48 -10.22 16 9 C 0.10 1.25 5.89 -3.44 -0.02 1.23 16 10 C -0.13 -1.65 5.91 -26.49 -0.16 -1.80 16 11 C -0.12 -1.99 5.45 -27.30 -0.15 -2.14 16 12 C 0.16 3.37 2.58 -68.36 -0.18 3.19 16 13 H 0.02 0.40 8.03 -51.93 -0.42 -0.02 16 14 C 0.12 2.28 3.32 -66.79 -0.22 2.06 16 15 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 16 C -0.13 -2.80 4.94 -25.20 -0.12 -2.92 16 17 C 0.17 4.40 5.47 -1.69 -0.01 4.39 16 18 N -0.59 -15.26 3.35 -163.28 -0.55 -15.80 16 19 C -0.23 -6.28 9.94 -15.06 -0.15 -6.43 16 20 H 0.08 2.05 7.31 -52.49 -0.38 1.67 16 21 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 22 N -0.92 -27.35 10.46 55.49 0.58 -26.77 16 23 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 27 S 0.21 2.11 19.73 -107.50 -2.12 -0.01 16 28 H 0.07 0.34 8.11 -51.93 -0.42 -0.08 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 32 H 0.15 1.79 8.06 -52.49 -0.42 1.36 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.08 0.90 4.06 -30.18 -0.12 0.77 16 35 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 1.22 7.70 -51.93 -0.40 0.82 16 38 H 0.06 1.11 8.12 -51.93 -0.42 0.69 16 39 H 0.08 1.77 6.35 -51.92 -0.33 1.44 16 40 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.04 1.11 7.81 -51.93 -0.41 0.70 16 42 H 0.06 1.58 7.19 -51.93 -0.37 1.21 16 43 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 346.39 15.07 5.22 5.22 Total: -1.00 -32.41 346.39 -10.60 -43.01 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -6.21 Total: -0.20 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -2.09 Total: -1.84 kcal Atomic # 7 Polarization: -52.34 SS G_CDS: -0.45 Total: -52.79 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.07 Total: -10.49 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Atomic # 16 Polarization: 2.11 SS G_CDS: -2.12 Total: -0.01 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.41 -10.60 -43.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049298533.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.876 kcal (2) G-P(sol) polarization free energy of solvation -32.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds