Wall clock time and date at job start Tue Mar 31 2020 12:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86796 * 120.00238 * 2 1 4 4 H 1.48504 * 109.47157 * 239.99954 * 3 2 1 5 5 H 1.48499 * 109.47359 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47192 * 119.99946 * 3 2 1 7 7 C 1.38816 * 119.99828 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00214 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99784 * 359.97438 * 7 2 1 10 10 C 1.47104 * 125.64392 * 179.97438 * 9 7 2 11 11 C 1.55027 * 107.12430 * 180.18296 * 10 9 7 12 12 H 1.09001 * 112.16199 * 216.41462 * 11 10 9 13 13 C 1.52965 * 107.60107 * 92.90372 * 11 10 9 14 14 C 1.52723 * 110.88137 * 194.02685 * 13 11 10 15 15 C 1.53436 * 107.90979 * 64.54889 * 14 13 11 16 16 N 1.46798 * 107.31895 * 300.85129 * 15 14 13 17 17 C 1.34781 * 119.52114 * 232.83445 * 16 15 14 18 18 O 1.21284 * 119.99556 * 179.72553 * 17 16 15 19 19 C 1.50699 * 120.00109 * 359.73322 * 17 16 15 20 20 C 1.50695 * 109.46916 * 179.97438 * 19 17 16 21 21 C 1.33395 * 125.20766 * 90.28611 * 20 19 17 22 22 C 1.38421 * 114.92147 * 180.20922 * 21 20 19 23 23 C 1.33388 * 114.92066 * 359.48238 * 22 21 20 24 24 S 1.75885 * 109.59458 * 0.27968 * 23 22 21 25 25 C 1.45016 * 120.95720 * 52.55869 * 16 15 14 26 26 H 1.08991 * 109.87201 * 192.81173 * 25 16 15 27 27 C 1.47673 * 125.64866 * 0.03023 * 9 7 2 28 28 H 0.97003 * 120.00062 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.90076 * 60.81545 * 10 9 7 30 30 H 1.08989 * 110.06361 * 299.64180 * 10 9 7 31 31 H 1.08992 * 109.19521 * 314.38967 * 13 11 10 32 32 H 1.09005 * 109.19097 * 73.71755 * 13 11 10 33 33 H 1.09000 * 109.68069 * 183.56974 * 14 13 11 34 34 H 1.08998 * 109.68321 * 304.08152 * 14 13 11 35 35 H 1.08998 * 109.26329 * 181.80063 * 15 14 13 36 36 H 1.08995 * 110.64802 * 60.68269 * 15 14 13 37 37 H 1.08989 * 109.47385 * 59.99551 * 19 17 16 38 38 H 1.08999 * 109.46538 * 299.99436 * 19 17 16 39 39 H 1.08001 * 122.53584 * 359.96649 * 21 20 19 40 40 H 1.08002 * 122.54201 * 179.76212 * 22 21 20 41 41 H 1.08005 * 125.20509 * 180.28882 * 23 22 21 42 42 H 1.08993 * 110.45402 * 84.72307 * 27 9 7 43 43 H 1.08999 * 110.44886 * 322.17246 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0016 10 6 1.9320 -3.7282 0.0017 11 6 0.7705 -4.7550 -0.0016 12 1 0.9992 -5.6365 0.5973 13 6 0.4760 -5.1154 -1.4588 14 6 -0.8612 -5.8433 -1.5799 15 6 -1.9688 -4.8688 -1.1582 16 7 -1.6887 -4.4604 0.2237 17 6 -2.6504 -4.5824 1.1601 18 8 -2.4268 -4.2522 2.3056 19 6 -4.0034 -5.1291 0.7840 20 6 -4.8883 -5.1627 2.0033 21 6 -5.6897 -4.1727 2.3996 22 6 -6.4066 -4.4298 3.5554 23 6 -6.1957 -5.6327 4.0918 24 16 -5.0282 -6.5165 3.1174 25 6 -0.3905 -3.9332 0.5972 26 1 -0.3015 -3.9026 1.6831 27 6 -0.1442 -2.5333 0.0016 28 1 -0.4850 0.8401 -0.0004 29 1 2.5410 -3.8598 0.8961 30 1 2.5467 -3.8605 -0.8885 31 1 0.4425 -4.2029 -2.0539 32 1 1.2697 -5.7603 -1.8358 33 1 -1.0218 -6.1463 -2.6145 34 1 -0.8601 -6.7227 -0.9359 35 1 -2.9320 -5.3768 -1.2059 36 1 -1.9786 -3.9937 -1.8078 37 1 -3.8905 -6.1387 0.3895 38 1 -4.4548 -4.4906 0.0246 39 1 -5.7699 -3.2397 1.8616 40 1 -7.0888 -3.7126 3.9875 41 1 -6.6694 -6.0068 4.9874 42 1 -0.5324 -2.4783 -1.0153 43 1 -0.6025 -1.7674 0.6272 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049955742.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:05 Heat of formation + Delta-G solvation = 31.600128 kcal Electronic energy + Delta-G solvation = -25268.463166 eV Core-core repulsion = 21827.096118 eV Total energy + Delta-G solvation = -3441.367049 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.31126 -38.32536 -37.34457 -35.28907 -32.96325 -32.16447 -31.81301 -29.36265 -27.83116 -26.62076 -25.50233 -23.99537 -23.16888 -22.02925 -20.51539 -19.89614 -19.20426 -18.02758 -17.21007 -16.99469 -16.82865 -15.64411 -15.25118 -15.01940 -14.88531 -14.28455 -13.96318 -13.76032 -13.44399 -13.20830 -12.88594 -12.75110 -12.67231 -12.38664 -12.25622 -12.07573 -11.98855 -11.56716 -11.53351 -11.10621 -11.04173 -10.82601 -10.75310 -10.67161 -10.31039 -10.24229 -9.87825 -9.74015 -9.67242 -9.45309 -8.63011 -8.61618 -8.42200 -8.10768 -6.82418 -5.63994 -3.06030 0.99598 1.64742 2.00614 2.75563 2.92185 3.36833 3.42211 3.46236 3.47558 4.50540 4.59622 4.69917 4.95068 5.00823 5.06285 5.12655 5.16419 5.34532 5.36404 5.47633 5.51093 5.58082 5.59984 5.63428 5.69939 5.91669 5.95609 6.07976 6.11807 6.12682 6.22993 6.27927 6.31286 6.42896 6.49720 6.64810 6.70324 6.92251 6.98127 7.43852 7.62575 7.77927 7.88694 8.35040 8.52801 9.21738 9.83157 10.47233 11.39959 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.015439 B = 0.003723 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.099748 B = 7518.204172 C = 8710.304797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.009 4.009 3 Si 0.915 3.085 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.225 4.225 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.140 3.860 11 C -0.108 4.108 12 H 0.074 0.926 13 C -0.110 4.110 14 C -0.131 4.131 15 C 0.104 3.896 16 N -0.589 5.589 17 C 0.510 3.490 18 O -0.528 6.528 19 C -0.070 4.070 20 C -0.150 4.150 21 C -0.130 4.130 22 C -0.130 4.130 23 C -0.219 4.219 24 S 0.099 5.901 25 C 0.117 3.883 26 H 0.096 0.904 27 C 0.158 3.842 28 H 0.252 0.748 29 H 0.023 0.977 30 H 0.027 0.973 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.101 0.899 38 H 0.112 0.888 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.161 0.839 42 H 0.014 0.986 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.709 -15.114 -0.699 19.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.745 3.255 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.353 4.353 8 H 0.096 0.904 9 N -0.328 5.328 10 C 0.014 3.986 11 C -0.128 4.128 12 H 0.093 0.907 13 C -0.148 4.148 14 C -0.170 4.170 15 C -0.019 4.019 16 N -0.321 5.321 17 C 0.296 3.704 18 O -0.404 6.404 19 C -0.112 4.112 20 C -0.267 4.267 21 C -0.160 4.160 22 C -0.161 4.161 23 C -0.354 4.354 24 S 0.362 5.638 25 C 0.012 3.988 26 H 0.114 0.886 27 C 0.032 3.968 28 H 0.063 0.937 29 H 0.040 0.960 30 H 0.044 0.956 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.119 0.881 38 H 0.130 0.870 39 H 0.157 0.843 40 H 0.156 0.844 41 H 0.179 0.821 42 H 0.032 0.968 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -10.966 -16.128 0.015 19.503 hybrid contribution -0.099 2.273 -0.179 2.282 sum -11.066 -13.855 -0.164 17.732 Atomic orbital electron populations 1.69801 1.04896 1.24918 1.57264 1.24789 0.95697 0.97722 1.02266 0.86154 0.78403 0.83056 0.77877 1.21232 1.21580 1.21121 1.19027 0.90454 0.82333 1.43522 0.90416 1.44422 1.01575 0.99851 1.86993 1.21501 0.93483 0.85616 0.98041 1.22428 0.96690 0.97695 0.96000 0.90736 1.21485 0.96017 1.00599 0.96671 1.21878 0.95852 0.98064 1.01169 1.21874 0.98375 0.98429 0.83227 1.47413 1.13040 1.62982 1.08644 1.20367 0.85589 0.78913 0.85527 1.90725 1.81019 1.49188 1.19511 1.20222 0.92357 1.03524 0.95119 1.23817 1.03208 0.98374 1.01348 1.20101 0.98357 0.99645 0.97924 1.20123 1.02187 0.97074 0.96669 1.25537 1.05062 0.99376 1.05444 1.84102 1.41269 1.18180 1.20211 1.22047 0.79792 0.96102 1.00850 0.88626 1.21964 0.84853 0.91615 0.98394 0.93681 0.95951 0.95555 0.90867 0.92373 0.91091 0.91677 0.90293 0.90462 0.88122 0.87042 0.84313 0.84411 0.82131 0.96764 0.87677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.23 10.10 55.49 0.56 -26.67 16 2 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 3 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 7 C -0.23 -6.33 10.28 -15.06 -0.15 -6.49 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.60 -15.52 3.40 -169.87 -0.58 -16.09 16 10 C 0.14 2.93 6.63 -2.64 -0.02 2.91 16 11 C -0.11 -1.90 3.56 -88.87 -0.32 -2.22 16 12 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 13 C -0.11 -1.62 4.67 -26.89 -0.13 -1.75 16 14 C -0.13 -1.52 6.12 -26.65 -0.16 -1.69 16 15 C 0.10 1.30 6.06 -3.65 -0.02 1.28 16 16 N -0.59 -9.72 2.73 -165.23 -0.45 -10.17 16 17 C 0.51 8.57 7.65 -10.98 -0.08 8.49 16 18 O -0.53 -11.23 15.35 5.55 0.09 -11.14 16 19 C -0.07 -0.85 4.51 -29.04 -0.13 -0.98 16 20 C -0.15 -1.97 5.00 -36.00 -0.18 -2.15 16 21 C -0.13 -1.68 10.05 -41.21 -0.41 -2.09 16 22 C -0.13 -1.50 10.18 -41.21 -0.42 -1.92 16 23 C -0.22 -2.41 11.23 29.04 0.33 -2.09 16 24 S 0.10 1.19 23.33 -107.50 -2.51 -1.32 16 25 C 0.12 2.34 3.04 -67.45 -0.21 2.14 16 26 H 0.10 2.19 6.95 -51.93 -0.36 1.83 16 27 C 0.16 3.86 5.06 -2.82 -0.01 3.85 16 28 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.03 0.54 7.76 -51.94 -0.40 0.14 16 31 H 0.07 1.26 7.25 -51.93 -0.38 0.88 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.71 5.81 -51.93 -0.30 0.41 16 36 H 0.08 1.04 7.62 -51.93 -0.40 0.65 16 37 H 0.10 0.95 7.60 -51.94 -0.39 0.55 16 38 H 0.11 1.11 7.94 -51.93 -0.41 0.70 16 39 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 40 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 41 H 0.16 1.34 8.06 -52.48 -0.42 0.92 16 42 H 0.01 0.37 6.95 -51.93 -0.36 0.00 16 43 H 0.11 3.04 5.94 -51.93 -0.31 2.73 16 LS Contribution 350.16 15.07 5.28 5.28 Total: -1.00 -33.34 350.16 -10.90 -44.24 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -6.24 Total: 1.64 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -2.02 Total: -3.06 kcal Atomic # 7 Polarization: -52.47 SS G_CDS: -0.47 Total: -52.93 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.09 Total: -11.14 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Atomic # 16 Polarization: 1.19 SS G_CDS: -2.51 Total: -1.32 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.34 -10.90 -44.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049955742.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.837 kcal (2) G-P(sol) polarization free energy of solvation -33.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds