Wall clock time and date at job start Tue Mar 31 2020 12:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86796 * 120.00238 * 2 1 4 4 H 1.48504 * 109.47157 * 239.99954 * 3 2 1 5 5 H 1.48499 * 109.47359 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47192 * 119.99946 * 3 2 1 7 7 C 1.38816 * 119.99828 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00214 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99784 * 359.97438 * 7 2 1 10 10 C 1.47104 * 125.64392 * 179.97438 * 9 7 2 11 11 C 1.55027 * 107.12430 * 180.18296 * 10 9 7 12 12 H 1.09001 * 112.16199 * 216.41462 * 11 10 9 13 13 C 1.52965 * 107.60107 * 92.90372 * 11 10 9 14 14 C 1.52723 * 110.88137 * 194.02685 * 13 11 10 15 15 C 1.53436 * 107.90979 * 64.54889 * 14 13 11 16 16 N 1.46798 * 107.31895 * 300.85129 * 15 14 13 17 17 C 1.34781 * 119.52114 * 232.83445 * 16 15 14 18 18 O 1.21284 * 119.99556 * 179.72553 * 17 16 15 19 19 C 1.50699 * 120.00109 * 359.73322 * 17 16 15 20 20 C 1.50695 * 109.46916 * 179.97438 * 19 17 16 21 21 C 1.33395 * 125.20766 * 90.28611 * 20 19 17 22 22 C 1.38421 * 114.92147 * 180.20922 * 21 20 19 23 23 C 1.33388 * 114.92066 * 359.48238 * 22 21 20 24 24 S 1.75885 * 109.59458 * 0.27968 * 23 22 21 25 25 C 1.45016 * 120.95720 * 52.55869 * 16 15 14 26 26 H 1.08991 * 109.87201 * 192.81173 * 25 16 15 27 27 C 1.47673 * 125.64866 * 0.03023 * 9 7 2 28 28 H 0.97003 * 120.00062 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.90076 * 60.81545 * 10 9 7 30 30 H 1.08989 * 110.06361 * 299.64180 * 10 9 7 31 31 H 1.08992 * 109.19521 * 314.38967 * 13 11 10 32 32 H 1.09005 * 109.19097 * 73.71755 * 13 11 10 33 33 H 1.09000 * 109.68069 * 183.56974 * 14 13 11 34 34 H 1.08998 * 109.68321 * 304.08152 * 14 13 11 35 35 H 1.08998 * 109.26329 * 181.80063 * 15 14 13 36 36 H 1.08995 * 110.64802 * 60.68269 * 15 14 13 37 37 H 1.08989 * 109.47385 * 59.99551 * 19 17 16 38 38 H 1.08999 * 109.46538 * 299.99436 * 19 17 16 39 39 H 1.08001 * 122.53584 * 359.96649 * 21 20 19 40 40 H 1.08002 * 122.54201 * 179.76212 * 22 21 20 41 41 H 1.08005 * 125.20509 * 180.28882 * 23 22 21 42 42 H 1.08993 * 110.45402 * 84.72307 * 27 9 7 43 43 H 1.08999 * 110.44886 * 322.17246 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0016 10 6 1.9320 -3.7282 0.0017 11 6 0.7705 -4.7550 -0.0016 12 1 0.9992 -5.6365 0.5973 13 6 0.4760 -5.1154 -1.4588 14 6 -0.8612 -5.8433 -1.5799 15 6 -1.9688 -4.8688 -1.1582 16 7 -1.6887 -4.4604 0.2237 17 6 -2.6504 -4.5824 1.1601 18 8 -2.4268 -4.2522 2.3056 19 6 -4.0034 -5.1291 0.7840 20 6 -4.8883 -5.1627 2.0033 21 6 -5.6897 -4.1727 2.3996 22 6 -6.4066 -4.4298 3.5554 23 6 -6.1957 -5.6327 4.0918 24 16 -5.0282 -6.5165 3.1174 25 6 -0.3905 -3.9332 0.5972 26 1 -0.3015 -3.9026 1.6831 27 6 -0.1442 -2.5333 0.0016 28 1 -0.4850 0.8401 -0.0004 29 1 2.5410 -3.8598 0.8961 30 1 2.5467 -3.8605 -0.8885 31 1 0.4425 -4.2029 -2.0539 32 1 1.2697 -5.7603 -1.8358 33 1 -1.0218 -6.1463 -2.6145 34 1 -0.8601 -6.7227 -0.9359 35 1 -2.9320 -5.3768 -1.2059 36 1 -1.9786 -3.9937 -1.8078 37 1 -3.8905 -6.1387 0.3895 38 1 -4.4548 -4.4906 0.0246 39 1 -5.7699 -3.2397 1.8616 40 1 -7.0888 -3.7126 3.9875 41 1 -6.6694 -6.0068 4.9874 42 1 -0.5324 -2.4783 -1.0153 43 1 -0.6025 -1.7674 0.6272 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049955742.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:04 Heat of formation + Delta-G solvation = 11.571549 kcal Electronic energy + Delta-G solvation = -25269.331671 eV Core-core repulsion = 21827.096118 eV Total energy + Delta-G solvation = -3442.235553 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.68226 -39.66432 -38.42373 -36.85049 -34.61447 -33.43979 -33.14934 -31.10374 -29.27064 -27.90867 -27.13464 -25.50075 -24.24857 -23.27335 -22.16509 -21.36901 -20.14859 -19.36011 -18.93154 -18.37960 -18.00676 -17.02204 -16.64245 -16.44808 -16.17677 -15.94377 -15.18162 -15.16128 -14.72379 -14.63189 -14.17234 -13.96752 -13.80316 -13.74920 -13.53867 -13.38914 -13.32541 -13.09663 -12.98826 -12.74670 -12.45510 -12.34055 -12.19584 -12.07534 -11.78063 -11.66793 -11.61870 -11.46359 -11.16340 -10.82880 -10.74733 -9.57120 -9.53817 -9.32465 -8.90130 -7.80140 -5.25338 0.07210 0.75897 1.10775 1.43290 1.47441 1.53635 1.63602 1.79328 2.13957 2.48161 3.30024 3.53058 3.62972 3.71338 3.82802 3.98881 3.99657 4.10620 4.19978 4.22533 4.27023 4.44610 4.50123 4.56144 4.60358 4.69524 4.72714 4.77452 4.85427 4.93440 4.96490 5.11329 5.18778 5.22361 5.29816 5.39724 5.40146 5.48262 5.54435 5.59758 5.65506 5.80718 6.23780 6.49768 7.05189 7.22666 7.73775 8.37650 9.21428 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.015439 B = 0.003723 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.099748 B = 7518.204172 C = 8710.304797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.066 4.066 3 Si 0.982 3.018 4 H -0.273 1.273 5 H -0.294 1.294 6 H -0.279 1.279 7 C -0.243 4.243 8 H 0.083 0.917 9 N -0.625 5.625 10 C 0.133 3.867 11 C -0.093 4.093 12 H 0.098 0.902 13 C -0.107 4.107 14 C -0.122 4.122 15 C 0.095 3.905 16 N -0.589 5.589 17 C 0.503 3.497 18 O -0.583 6.583 19 C -0.060 4.060 20 C -0.172 4.172 21 C -0.145 4.145 22 C -0.145 4.145 23 C -0.215 4.215 24 S 0.096 5.904 25 C 0.131 3.869 26 H 0.059 0.941 27 C 0.172 3.828 28 H 0.246 0.754 29 H 0.019 0.981 30 H 0.037 0.963 31 H 0.043 0.957 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.081 0.919 35 H 0.124 0.876 36 H 0.063 0.937 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.140 0.860 40 H 0.157 0.843 41 H 0.187 0.813 42 H -0.001 1.001 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.315 -17.479 -1.859 21.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.259 4.259 3 Si 0.809 3.191 4 H -0.199 1.199 5 H -0.220 1.220 6 H -0.205 1.205 7 C -0.372 4.372 8 H 0.101 0.899 9 N -0.351 5.351 10 C 0.007 3.993 11 C -0.113 4.113 12 H 0.116 0.884 13 C -0.145 4.145 14 C -0.159 4.159 15 C -0.026 4.026 16 N -0.320 5.320 17 C 0.292 3.708 18 O -0.463 6.463 19 C -0.101 4.101 20 C -0.289 4.289 21 C -0.175 4.175 22 C -0.176 4.176 23 C -0.351 4.351 24 S 0.359 5.641 25 C 0.024 3.976 26 H 0.077 0.923 27 C 0.046 3.954 28 H 0.055 0.945 29 H 0.037 0.963 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.101 0.899 33 H 0.124 0.876 34 H 0.100 0.900 35 H 0.142 0.858 36 H 0.081 0.919 37 H 0.155 0.845 38 H 0.153 0.847 39 H 0.157 0.843 40 H 0.175 0.825 41 H 0.205 0.795 42 H 0.017 0.983 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.564 -18.540 -1.184 21.883 hybrid contribution 0.103 3.023 0.235 3.034 sum -11.461 -15.517 -0.949 19.314 Atomic orbital electron populations 1.70102 1.06360 1.25021 1.58376 1.25669 0.96583 1.01129 1.02502 0.85107 0.77107 0.78561 0.78287 1.19912 1.21997 1.20476 1.19452 0.91076 0.83676 1.42957 0.89878 1.44713 1.02350 1.01136 1.86948 1.21726 0.94924 0.84489 0.98118 1.22403 0.93498 0.96897 0.98484 0.88381 1.21457 0.99196 1.00202 0.93602 1.21879 0.92853 0.97530 1.03673 1.22241 1.01340 0.98677 0.80327 1.47519 1.11576 1.62362 1.10591 1.21298 0.86976 0.77837 0.84706 1.90697 1.82112 1.51542 1.21931 1.20282 0.88848 1.05601 0.95403 1.24044 1.03691 0.98990 1.02211 1.20370 0.98801 0.99775 0.98598 1.20387 1.02721 0.97903 0.96550 1.25915 1.04285 0.98987 1.05871 1.84035 1.41633 1.18030 1.20360 1.21451 0.83137 0.94499 0.98469 0.92316 1.21547 0.84228 0.93102 0.96507 0.94488 0.96312 0.94460 0.93862 0.89939 0.87613 0.90021 0.85760 0.91907 0.84539 0.84670 0.84272 0.82526 0.79549 0.98306 0.92809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.94 10.10 21.65 0.22 -58.72 16 2 C -0.07 -3.89 5.49 84.86 0.47 -3.42 16 3 Si 0.98 47.01 29.55 68.60 2.03 49.04 16 4 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 6 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 7 C -0.24 -14.08 10.28 84.03 0.86 -13.22 16 8 H 0.08 4.58 7.83 -2.91 -0.02 4.56 16 9 N -0.62 -33.46 3.40 -691.34 -2.35 -35.81 16 10 C 0.13 5.61 6.63 86.96 0.58 6.19 16 11 C -0.09 -3.19 3.56 -9.66 -0.03 -3.22 16 12 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 13 C -0.11 -2.89 4.67 30.49 0.14 -2.75 16 14 C -0.12 -2.30 6.12 30.65 0.19 -2.12 16 15 C 0.10 2.12 6.06 86.47 0.52 2.64 16 16 N -0.59 -19.12 2.73 -795.06 -2.17 -21.29 16 17 C 0.50 16.72 7.65 87.66 0.67 17.39 16 18 O -0.58 -25.62 15.35 -3.04 -0.05 -25.67 16 19 C -0.06 -1.31 4.51 29.10 0.13 -1.18 16 20 C -0.17 -4.30 5.00 24.59 0.12 -4.18 16 21 C -0.14 -3.66 10.05 21.22 0.21 -3.44 16 22 C -0.15 -3.21 10.18 21.22 0.22 -2.99 16 23 C -0.22 -4.40 11.23 66.72 0.75 -3.65 16 24 S 0.10 2.16 23.33 -56.49 -1.32 0.85 16 25 C 0.13 5.40 3.04 46.10 0.14 5.54 16 26 H 0.06 2.85 6.95 -2.39 -0.02 2.84 16 27 C 0.17 8.92 5.06 86.53 0.44 9.36 16 28 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 29 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.04 1.50 7.76 -2.39 -0.02 1.48 16 31 H 0.04 1.44 7.25 -2.39 -0.02 1.42 16 32 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 33 H 0.11 1.38 8.14 -2.39 -0.02 1.37 16 34 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.12 1.65 5.81 -2.39 -0.01 1.64 16 36 H 0.06 1.61 7.62 -2.39 -0.02 1.59 16 37 H 0.14 1.98 7.60 -2.39 -0.02 1.96 16 38 H 0.14 2.30 7.94 -2.39 -0.02 2.28 16 39 H 0.14 3.35 8.06 -2.91 -0.02 3.32 16 40 H 0.16 2.72 8.06 -2.91 -0.02 2.69 16 41 H 0.19 2.68 8.06 -2.91 -0.02 2.65 16 42 H 0.00 -0.05 6.95 -2.39 -0.02 -0.07 16 43 H 0.05 3.35 5.94 -2.39 -0.01 3.33 16 Total: -1.00 -78.80 350.16 2.78 -76.03 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: 1.01 Total: 14.63 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: 5.41 Total: 0.94 kcal Atomic # 7 Polarization: -111.52 SS G_CDS: -4.30 Total: -115.82 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.05 Total: -25.67 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.04 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -1.32 Total: 0.85 kcal Total: -78.80 2.78 -76.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049955742.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.600 kcal (2) G-P(sol) polarization free energy of solvation -78.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds