Wall clock time and date at job start Tue Mar 31 2020 12:38:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31624 * 1
3 3 Si 1.86803 * 119.99763 * 2 1
4 4 H 1.48498 * 109.47017 * 269.99564 * 3 2 1
5 5 H 1.48492 * 109.47131 * 30.00139 * 3 2 1
6 6 H 1.48501 * 109.46802 * 149.99892 * 3 2 1
7 7 C 1.38812 * 120.00274 * 179.97438 * 2 1 3
8 8 H 1.07993 * 120.00187 * 180.02562 * 7 2 1
9 9 N 1.36944 * 119.99770 * 0.02562 * 7 2 1
10 10 C 1.46497 * 119.99791 * 179.97438 * 9 7 2
11 11 H 1.09002 * 112.84935 * 334.66194 * 10 9 7
12 12 C 1.53786 * 113.61643 * 105.85866 * 10 9 7
13 13 C 1.54049 * 86.98426 * 140.01639 * 12 10 9
14 14 H 1.09003 * 113.61268 * 89.11946 * 13 12 10
15 15 C 1.53001 * 113.69672 * 220.01213 * 13 12 10
16 16 N 1.46509 * 109.46802 * 272.53533 * 15 13 12
17 17 C 1.34771 * 119.99581 * 179.97438 * 16 15 13
18 18 O 1.21707 * 120.00693 * 0.02562 * 17 16 15
19 19 C 1.46586 * 120.00033 * 180.02562 * 17 16 15
20 20 C 1.36645 * 125.45798 * 180.02562 * 19 17 16
21 21 C 1.37478 * 113.29164 * 179.97438 * 20 19 17
22 22 C 1.33811 * 115.10493 * 359.97438 * 21 20 19
23 23 C 1.50704 * 124.52327 * 180.02562 * 22 21 20
24 24 C 1.53002 * 117.49703 * 188.62107 * 23 22 21
25 25 C 1.52992 * 60.00126 * 252.51212 * 24 23 22
26 26 S 1.70623 * 110.95364 * 359.72528 * 22 21 20
27 27 C 1.53781 * 113.61305 * 203.46713 * 10 9 7
28 28 H 0.96996 * 120.00281 * 0.02562 * 1 2 3
29 29 H 0.96995 * 120.00062 * 359.97438 * 9 7 2
30 30 H 1.08992 * 113.61675 * 254.61383 * 12 10 9
31 31 H 1.09000 * 113.60973 * 25.51671 * 12 10 9
32 32 H 1.09002 * 109.47117 * 32.53319 * 15 13 12
33 33 H 1.08998 * 109.47421 * 152.53611 * 15 13 12
34 34 H 0.96997 * 119.99847 * 0.02562 * 16 15 13
35 35 H 1.07991 * 123.35635 * 359.97438 * 20 19 17
36 36 H 1.08005 * 122.44639 * 180.02562 * 21 20 19
37 37 H 1.08995 * 115.54985 * 334.33289 * 23 22 21
38 38 H 1.09001 * 117.50162 * 0.02562 * 24 23 22
39 39 H 1.08997 * 117.49475 * 145.01860 * 24 23 22
40 40 H 1.08997 * 117.50382 * 252.51307 * 25 24 23
41 41 H 1.09004 * 117.51622 * 107.48043 * 25 24 23
42 42 H 1.08999 * 113.61567 * 334.48111 * 27 10 9
43 43 H 1.09000 * 113.61379 * 105.30234 * 27 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 2.4977 2.0464 -1.4001
5 1 1.4476 2.6526 0.7000
6 1 3.5477 1.4402 0.7001
7 6 2.0104 -1.2021 0.0005
8 1 3.0903 -1.2021 0.0010
9 7 1.3256 -2.3881 0.0005
10 6 2.0582 -3.6568 0.0005
11 1 3.0560 -3.5693 -0.4293
12 6 2.0328 -4.3828 1.3560
13 6 1.8625 -5.6908 0.5602
14 1 2.8068 -6.1596 0.2833
15 6 0.8755 -6.6726 1.1948
16 7 1.5809 -7.5178 2.1615
17 6 0.9079 -8.4626 2.8477
18 8 -0.2856 -8.6140 2.6641
19 6 1.6135 -9.3079 3.8153
20 6 1.0441 -10.2958 4.5684
21 6 1.9387 -10.9330 5.3953
22 6 3.1974 -10.4847 5.3230
23 6 4.3459 -11.0293 6.1326
24 6 5.6731 -10.2704 6.0753
25 6 5.5322 -11.6195 5.3676
26 16 3.3301 -9.2195 4.1859
27 6 1.2469 -4.8365 -0.5606
28 1 -0.4850 0.8400 -0.0004
29 1 0.3557 -2.3881 0.0005
30 1 2.9742 -4.3216 1.9018
31 1 1.1688 -4.1300 1.9705
32 1 0.0877 -6.1176 1.7043
33 1 0.4353 -7.2983 0.4184
34 1 2.5321 -7.3969 2.3081
35 1 -0.0041 -10.5505 4.5190
36 1 1.6470 -11.7374 6.0544
37 1 4.0739 -11.4976 7.0785
38 1 5.7156 -9.3769 5.4524
39 1 6.2745 -10.2391 6.9838
40 1 6.0409 -12.4757 5.8104
41 1 5.4818 -11.6141 4.2787
42 1 0.1684 -4.7076 -0.4690
43 1 1.5534 -5.1404 -1.5615
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001086253526.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:38:11
Heat of formation + Delta-G solvation = 46.251230 kcal
Electronic energy + Delta-G solvation = -22986.636757 eV
Core-core repulsion = 19545.905028 eV
Total energy + Delta-G solvation = -3440.731729 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 320.130 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-39.92927 -38.86267 -38.36395 -36.78300 -34.72048 -33.30005 -30.62283 -29.94896
-27.57291 -25.36438 -25.08736 -23.81268 -22.96133 -22.16150 -21.62250 -21.06668
-19.66175 -19.07077 -18.16177 -17.03954 -16.66559 -15.91621 -15.74990 -15.42062
-15.32050 -14.75616 -14.67292 -14.19041 -13.71848 -13.59663 -13.40707 -13.13125
-12.89447 -12.75534 -12.46179 -12.08344 -11.92205 -11.82666 -11.41123 -11.32616
-11.23828 -11.15055 -10.92855 -10.84755 -10.54700 -10.32955 -10.15915 -9.99433
-9.82746 -9.51000 -9.16758 -8.92194 -8.87570 -8.80985 -6.96390 -5.78256
-3.07209 0.17812 1.08986 1.53128 2.06199 3.03792 3.08695 3.35427
3.42599 3.47631 3.49561 3.95118 4.25945 4.41168 4.58011 4.61822
4.73839 4.94769 4.98833 5.00092 5.09693 5.14327 5.21573 5.33116
5.46200 5.47396 5.48809 5.53983 5.66739 5.78820 5.80762 5.87666
5.93287 6.02915 6.08703 6.21208 6.29506 6.35053 6.41695 6.58731
6.81593 7.10897 7.35168 7.68930 8.05031 8.40280 9.51277 10.09616
10.43781 11.44096
Molecular weight = 320.13amu
Principal moments of inertia in cm(-1)
A = 0.019144 B = 0.002189 C = 0.002050
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1462.228671 B =12786.207964 C =13657.982132
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.932 5.932
2 C -0.014 4.014
3 Si 0.907 3.093
4 H -0.290 1.290
5 H -0.291 1.291
6 H -0.282 1.282
7 C -0.244 4.244
8 H 0.071 0.929
9 N -0.713 5.713
10 C 0.166 3.834
11 H 0.075 0.925
12 C -0.161 4.161
13 C -0.129 4.129
14 H 0.088 0.912
15 C 0.133 3.867
16 N -0.720 5.720
17 C 0.587 3.413
18 O -0.531 6.531
19 C -0.267 4.267
20 C -0.052 4.052
21 C -0.150 4.150
22 C -0.163 4.163
23 C -0.093 4.093
24 C -0.175 4.175
25 C -0.166 4.166
26 S 0.203 5.797
27 C -0.141 4.141
28 H 0.256 0.744
29 H 0.385 0.615
30 H 0.054 0.946
31 H 0.079 0.921
32 H 0.073 0.927
33 H 0.068 0.932
34 H 0.397 0.603
35 H 0.154 0.846
36 H 0.145 0.855
37 H 0.125 0.875
38 H 0.098 0.902
39 H 0.106 0.894
40 H 0.104 0.896
41 H 0.099 0.901
42 H 0.081 0.919
43 H 0.062 0.938
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.398 -26.156 11.258 30.315
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.580 5.580
2 C -0.210 4.210
3 Si 0.738 3.262
4 H -0.217 1.217
5 H -0.218 1.218
6 H -0.208 1.208
7 C -0.375 4.375
8 H 0.089 0.911
9 N -0.351 5.351
10 C 0.054 3.946
11 H 0.093 0.907
12 C -0.202 4.202
13 C -0.148 4.148
14 H 0.106 0.894
15 C 0.010 3.990
16 N -0.371 5.371
17 C 0.373 3.627
18 O -0.410 6.410
19 C -0.387 4.387
20 C -0.085 4.085
21 C -0.181 4.181
22 C -0.283 4.283
23 C -0.113 4.113
24 C -0.213 4.213
25 C -0.204 4.204
26 S 0.472 5.528
27 C -0.180 4.180
28 H 0.066 0.934
29 H 0.219 0.781
30 H 0.073 0.927
31 H 0.097 0.903
32 H 0.091 0.909
33 H 0.086 0.914
34 H 0.231 0.769
35 H 0.171 0.829
36 H 0.162 0.838
37 H 0.143 0.857
38 H 0.116 0.884
39 H 0.124 0.876
40 H 0.122 0.878
41 H 0.117 0.883
42 H 0.100 0.900
43 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges 10.829 -25.127 10.559 29.328
hybrid contribution -0.630 -0.021 0.776 0.999
sum 10.199 -25.147 11.335 29.409
Atomic orbital electron populations
1.69661 1.05130 1.25748 1.57452 1.24778 0.95533 0.97802 1.02867
0.86187 0.78651 0.83820 0.77510 1.21695 1.21767 1.20752 1.19295
0.91056 0.84237 1.42906 0.91108 1.42414 1.05771 0.99874 1.87041
1.21515 0.95241 0.85068 0.92798 0.90730 1.24009 1.01365 0.94708
1.00165 1.22706 0.98444 0.94471 0.99184 0.89354 1.21507 0.95068
0.91754 0.90688 1.45937 1.12575 1.36021 1.42546 1.16954 0.86409
0.79600 0.79766 1.90839 1.14158 1.69766 1.66219 1.24671 0.97951
1.07237 1.08826 1.20745 1.01444 0.93001 0.93347 1.19888 0.91601
1.03495 1.03118 1.23495 0.98550 1.02543 1.03687 1.20506 0.86199
1.04684 0.99905 1.23127 0.98558 0.96012 1.03588 1.23145 0.99989
0.97294 0.99963 1.82923 1.04699 1.31391 1.33796 1.23420 1.00959
0.96977 0.96689 0.93446 0.78052 0.92732 0.90266 0.90856 0.91405
0.76907 0.82855 0.83761 0.85742 0.88360 0.87578 0.87805 0.88254
0.90027 0.91913
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -28.22 13.06 55.49 0.72 -27.49 16
2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16
3 Si 0.91 22.33 29.55 -169.99 -5.02 17.30 16
4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16
5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16
6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16
7 C -0.24 -6.73 9.97 -15.06 -0.15 -6.89 16
8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16
9 N -0.71 -17.77 5.41 -52.64 -0.28 -18.05 16
10 C 0.17 3.19 4.47 -67.12 -0.30 2.89 16
11 H 0.07 1.42 8.11 -51.93 -0.42 0.99 16
12 C -0.16 -2.67 7.45 -25.77 -0.19 -2.86 16
13 C -0.13 -1.73 3.76 -89.67 -0.34 -2.06 16
14 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16
15 C 0.13 1.79 5.52 -4.04 -0.02 1.76 16
16 N -0.72 -8.87 5.55 -61.64 -0.34 -9.21 16
17 C 0.59 8.18 7.78 -12.90 -0.10 8.08 16
18 O -0.53 -9.27 16.84 5.18 0.09 -9.18 16
19 C -0.27 -3.03 6.45 -36.79 -0.24 -3.27 16
20 C -0.05 -0.54 10.01 -40.43 -0.40 -0.94 16
21 C -0.15 -1.26 9.99 -41.41 -0.41 -1.67 16
22 C -0.16 -1.31 5.93 -35.86 -0.21 -1.53 16
23 C -0.09 -0.56 6.19 -91.77 -0.57 -1.13 16
24 C -0.18 -0.93 10.00 -26.73 -0.27 -1.20 16
25 C -0.17 -0.84 10.23 -26.73 -0.27 -1.11 16
26 S 0.20 1.73 20.82 -107.50 -2.24 -0.51 16
27 C -0.14 -2.22 7.39 -25.92 -0.19 -2.42 16
28 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16
29 H 0.39 10.24 7.91 -40.82 -0.32 9.92 16
30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16
31 H 0.08 1.45 7.91 -51.93 -0.41 1.04 16
32 H 0.07 1.11 7.85 -51.93 -0.41 0.71 16
33 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16
34 H 0.40 4.02 7.59 -40.82 -0.31 3.71 16
35 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16
36 H 0.14 0.89 8.06 -52.48 -0.42 0.47 16
37 H 0.12 0.60 8.14 -51.93 -0.42 0.18 16
38 H 0.10 0.56 7.20 -51.93 -0.37 0.18 16
39 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16
40 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16
41 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16
42 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16
43 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16
LS Contribution 375.22 15.07 5.65 5.65
Total: -1.00 -32.58 375.22 -11.63 -44.21
By element:
Atomic # 1 Polarization: 16.56 SS G_CDS: -6.44 Total: 10.12 kcal
Atomic # 6 Polarization: -9.07 SS G_CDS: -3.77 Total: -12.84 kcal
Atomic # 7 Polarization: -54.85 SS G_CDS: 0.10 Total: -54.75 kcal
Atomic # 8 Polarization: -9.27 SS G_CDS: 0.09 Total: -9.18 kcal
Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal
Atomic # 16 Polarization: 1.73 SS G_CDS: -2.24 Total: -0.51 kcal
Total LS contribution 5.65 Total: 5.65 kcal
Total: -32.58 -11.63 -44.21 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001086253526.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 90.457 kcal
(2) G-P(sol) polarization free energy of solvation -32.578 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.879 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.628 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.205 kcal
(6) G-S(sol) free energy of system = (1) + (5) 46.251 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds