Wall clock time and date at job start Tue Mar 31 2020 12:38:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31624 * 1
3 3 Si 1.86803 * 119.99763 * 2 1
4 4 H 1.48498 * 109.47017 * 269.99564 * 3 2 1
5 5 H 1.48492 * 109.47131 * 30.00139 * 3 2 1
6 6 H 1.48501 * 109.46802 * 149.99892 * 3 2 1
7 7 C 1.38812 * 120.00274 * 179.97438 * 2 1 3
8 8 H 1.07993 * 120.00187 * 180.02562 * 7 2 1
9 9 N 1.36944 * 119.99770 * 0.02562 * 7 2 1
10 10 C 1.46497 * 119.99791 * 179.97438 * 9 7 2
11 11 H 1.09002 * 112.84935 * 334.66194 * 10 9 7
12 12 C 1.53786 * 113.61643 * 105.85866 * 10 9 7
13 13 C 1.54049 * 86.98426 * 140.01639 * 12 10 9
14 14 H 1.09003 * 113.61268 * 89.11946 * 13 12 10
15 15 C 1.53001 * 113.69672 * 220.01213 * 13 12 10
16 16 N 1.46509 * 109.46802 * 272.53533 * 15 13 12
17 17 C 1.34771 * 119.99581 * 179.97438 * 16 15 13
18 18 O 1.21707 * 120.00693 * 0.02562 * 17 16 15
19 19 C 1.46586 * 120.00033 * 180.02562 * 17 16 15
20 20 C 1.36645 * 125.45798 * 180.02562 * 19 17 16
21 21 C 1.37478 * 113.29164 * 179.97438 * 20 19 17
22 22 C 1.33811 * 115.10493 * 359.97438 * 21 20 19
23 23 C 1.50704 * 124.52327 * 180.02562 * 22 21 20
24 24 C 1.53002 * 117.49703 * 188.62107 * 23 22 21
25 25 C 1.52992 * 60.00126 * 252.51212 * 24 23 22
26 26 S 1.70623 * 110.95364 * 359.72528 * 22 21 20
27 27 C 1.53781 * 113.61305 * 203.46713 * 10 9 7
28 28 H 0.96996 * 120.00281 * 0.02562 * 1 2 3
29 29 H 0.96995 * 120.00062 * 359.97438 * 9 7 2
30 30 H 1.08992 * 113.61675 * 254.61383 * 12 10 9
31 31 H 1.09000 * 113.60973 * 25.51671 * 12 10 9
32 32 H 1.09002 * 109.47117 * 32.53319 * 15 13 12
33 33 H 1.08998 * 109.47421 * 152.53611 * 15 13 12
34 34 H 0.96997 * 119.99847 * 0.02562 * 16 15 13
35 35 H 1.07991 * 123.35635 * 359.97438 * 20 19 17
36 36 H 1.08005 * 122.44639 * 180.02562 * 21 20 19
37 37 H 1.08995 * 115.54985 * 334.33289 * 23 22 21
38 38 H 1.09001 * 117.50162 * 0.02562 * 24 23 22
39 39 H 1.08997 * 117.49475 * 145.01860 * 24 23 22
40 40 H 1.08997 * 117.50382 * 252.51307 * 25 24 23
41 41 H 1.09004 * 117.51622 * 107.48043 * 25 24 23
42 42 H 1.08999 * 113.61567 * 334.48111 * 27 10 9
43 43 H 1.09000 * 113.61379 * 105.30234 * 27 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 2.4977 2.0464 -1.4001
5 1 1.4476 2.6526 0.7000
6 1 3.5477 1.4402 0.7001
7 6 2.0104 -1.2021 0.0005
8 1 3.0903 -1.2021 0.0010
9 7 1.3256 -2.3881 0.0005
10 6 2.0582 -3.6568 0.0005
11 1 3.0560 -3.5693 -0.4293
12 6 2.0328 -4.3828 1.3560
13 6 1.8625 -5.6908 0.5602
14 1 2.8068 -6.1596 0.2833
15 6 0.8755 -6.6726 1.1948
16 7 1.5809 -7.5178 2.1615
17 6 0.9079 -8.4626 2.8477
18 8 -0.2856 -8.6140 2.6641
19 6 1.6135 -9.3079 3.8153
20 6 1.0441 -10.2958 4.5684
21 6 1.9387 -10.9330 5.3953
22 6 3.1974 -10.4847 5.3230
23 6 4.3459 -11.0293 6.1326
24 6 5.6731 -10.2704 6.0753
25 6 5.5322 -11.6195 5.3676
26 16 3.3301 -9.2195 4.1859
27 6 1.2469 -4.8365 -0.5606
28 1 -0.4850 0.8400 -0.0004
29 1 0.3557 -2.3881 0.0005
30 1 2.9742 -4.3216 1.9018
31 1 1.1688 -4.1300 1.9705
32 1 0.0877 -6.1176 1.7043
33 1 0.4353 -7.2983 0.4184
34 1 2.5321 -7.3969 2.3081
35 1 -0.0041 -10.5505 4.5190
36 1 1.6470 -11.7374 6.0544
37 1 4.0739 -11.4976 7.0785
38 1 5.7156 -9.3769 5.4524
39 1 6.2745 -10.2391 6.9838
40 1 6.0409 -12.4757 5.8104
41 1 5.4818 -11.6141 4.2787
42 1 0.1684 -4.7076 -0.4690
43 1 1.5534 -5.1404 -1.5615
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001086253526.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:38:10
Heat of formation + Delta-G solvation = 26.596549 kcal
Electronic energy + Delta-G solvation = -22987.489048 eV
Core-core repulsion = 19545.905028 eV
Total energy + Delta-G solvation = -3441.584020 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 320.130 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-41.01520 -39.89948 -39.26128 -37.38813 -36.09919 -35.06074 -32.28048 -31.01847
-28.76554 -26.47127 -26.37530 -25.53369 -23.33733 -22.81055 -22.65012 -22.25489
-20.77643 -20.20911 -19.18280 -18.86600 -17.54058 -16.86034 -16.77702 -16.58163
-16.23951 -16.03138 -15.82535 -15.40266 -15.09024 -14.89345 -14.59476 -14.22196
-13.92677 -13.45701 -13.36658 -13.24432 -13.03280 -13.02585 -12.93628 -12.66428
-12.45536 -12.20032 -12.08375 -11.98107 -11.68266 -11.63919 -11.57018 -11.35854
-11.23616 -11.03168 -10.81319 -10.26414 -9.59739 -9.52531 -8.97453 -7.94028
-5.22475 -0.58748 0.38296 0.83040 1.30592 1.47471 1.49309 1.57615
2.02922 2.11117 2.57117 2.94119 3.37600 3.45217 3.63811 3.70997
3.78746 3.84232 3.92783 4.02681 4.24244 4.27971 4.31589 4.34052
4.40085 4.47152 4.53516 4.71724 4.75195 4.95126 4.96212 4.97734
5.00272 5.02839 5.09943 5.16378 5.18780 5.19188 5.27890 5.33810
5.39484 5.52427 5.71827 6.28195 6.36183 7.02726 7.33625 8.12052
8.33707 9.29488
Molecular weight = 320.13amu
Principal moments of inertia in cm(-1)
A = 0.019144 B = 0.002189 C = 0.002050
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1462.228671 B =12786.207964 C =13657.982132
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.972 5.972
2 C -0.081 4.081
3 Si 0.974 3.026
4 H -0.287 1.287
5 H -0.298 1.298
6 H -0.267 1.267
7 C -0.241 4.241
8 H 0.080 0.920
9 N -0.730 5.730
10 C 0.144 3.856
11 H 0.082 0.918
12 C -0.155 4.155
13 C -0.098 4.098
14 H 0.122 0.878
15 C 0.138 3.862
16 N -0.711 5.711
17 C 0.585 3.415
18 O -0.578 6.578
19 C -0.305 4.305
20 C -0.052 4.052
21 C -0.160 4.160
22 C -0.156 4.156
23 C -0.105 4.105
24 C -0.176 4.176
25 C -0.160 4.160
26 S 0.237 5.763
27 C -0.134 4.134
28 H 0.250 0.750
29 H 0.372 0.628
30 H 0.068 0.932
31 H 0.055 0.945
32 H 0.051 0.949
33 H 0.071 0.929
34 H 0.409 0.591
35 H 0.149 0.851
36 H 0.167 0.833
37 H 0.140 0.860
38 H 0.093 0.907
39 H 0.120 0.880
40 H 0.121 0.879
41 H 0.094 0.906
42 H 0.067 0.933
43 H 0.081 0.919
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.457 -27.907 12.104 33.262
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.623 5.623
2 C -0.273 4.273
3 Si 0.803 3.197
4 H -0.214 1.214
5 H -0.225 1.225
6 H -0.192 1.192
7 C -0.373 4.373
8 H 0.098 0.902
9 N -0.368 5.368
10 C 0.035 3.965
11 H 0.100 0.900
12 C -0.196 4.196
13 C -0.117 4.117
14 H 0.140 0.860
15 C 0.014 3.986
16 N -0.362 5.362
17 C 0.373 3.627
18 O -0.460 6.460
19 C -0.425 4.425
20 C -0.086 4.086
21 C -0.190 4.190
22 C -0.276 4.276
23 C -0.125 4.125
24 C -0.214 4.214
25 C -0.198 4.198
26 S 0.506 5.494
27 C -0.174 4.174
28 H 0.059 0.941
29 H 0.203 0.797
30 H 0.087 0.913
31 H 0.074 0.926
32 H 0.069 0.931
33 H 0.089 0.911
34 H 0.246 0.754
35 H 0.166 0.834
36 H 0.184 0.816
37 H 0.158 0.842
38 H 0.111 0.889
39 H 0.139 0.861
40 H 0.139 0.861
41 H 0.113 0.887
42 H 0.086 0.914
43 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges 13.970 -26.918 11.405 32.401
hybrid contribution -1.485 0.399 0.564 1.638
sum 12.485 -26.519 11.969 31.661
Atomic orbital electron populations
1.69829 1.06724 1.25984 1.59794 1.25617 0.96388 1.01300 1.04022
0.85130 0.77724 0.79459 0.77411 1.21393 1.22534 1.19209 1.19731
0.91615 0.85338 1.40590 0.90237 1.42641 1.05362 1.01244 1.87527
1.21949 0.95664 0.83868 0.95053 0.90001 1.23797 1.01097 0.95961
0.98730 1.22544 0.99414 0.92991 0.96717 0.85977 1.21330 0.94698
0.91733 0.90811 1.45798 1.13083 1.35331 1.41946 1.17321 0.86003
0.79622 0.79796 1.90804 1.16150 1.71195 1.67836 1.24520 0.99999
1.08212 1.09788 1.20922 1.01721 0.92738 0.93261 1.20045 0.91373
1.04176 1.03359 1.23894 0.99212 1.01592 1.02870 1.20675 0.85793
1.05582 1.00485 1.23228 0.98002 0.95932 1.04206 1.23233 0.98960
0.97828 0.99756 1.82711 1.01950 1.31264 1.33498 1.23301 0.99867
0.95710 0.98490 0.94145 0.79664 0.91319 0.92634 0.93099 0.91076
0.75428 0.83382 0.81582 0.84223 0.88896 0.86130 0.86122 0.88714
0.91387 0.90024
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.97 -60.46 13.06 21.65 0.28 -60.18 16
2 C -0.08 -4.71 5.50 84.86 0.47 -4.25 16
3 Si 0.97 46.28 29.55 68.60 2.03 48.31 16
4 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16
5 H -0.30 -14.40 7.11 99.48 0.71 -13.70 16
6 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16
7 C -0.24 -13.33 9.97 84.03 0.84 -12.49 16
8 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16
9 N -0.73 -36.86 5.41 -320.44 -1.73 -38.59 16
10 C 0.14 5.42 4.47 45.52 0.20 5.62 16
11 H 0.08 2.96 8.11 -2.39 -0.02 2.94 16
12 C -0.16 -4.98 7.45 31.21 0.23 -4.74 16
13 C -0.10 -2.42 3.76 -10.18 -0.04 -2.46 16
14 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16
15 C 0.14 3.62 5.52 86.38 0.48 4.10 16
16 N -0.71 -16.88 5.55 -467.15 -2.59 -19.48 16
17 C 0.58 16.41 7.78 86.42 0.67 17.09 16
18 O -0.58 -20.89 16.84 -4.37 -0.07 -20.97 16
19 C -0.31 -6.82 6.45 24.08 0.16 -6.66 16
20 C -0.05 -1.06 10.01 21.72 0.22 -0.84 16
21 C -0.16 -2.41 9.99 21.08 0.21 -2.20 16
22 C -0.16 -2.17 5.93 24.68 0.15 -2.02 16
23 C -0.11 -0.97 6.19 -11.54 -0.07 -1.04 16
24 C -0.18 -1.35 10.00 30.59 0.31 -1.04 16
25 C -0.16 -1.14 10.23 30.59 0.31 -0.82 16
26 S 0.24 3.61 20.82 -56.49 -1.18 2.43 16
27 C -0.13 -4.09 7.39 31.12 0.23 -3.86 16
28 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16
29 H 0.37 20.44 7.91 -92.71 -0.73 19.70 16
30 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16
31 H 0.05 2.06 7.91 -2.39 -0.02 2.05 16
32 H 0.05 1.59 7.85 -2.39 -0.02 1.57 16
33 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16
34 H 0.41 7.51 7.59 -92.71 -0.70 6.81 16
35 H 0.15 3.03 8.06 -2.92 -0.02 3.01 16
36 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16
37 H 0.14 0.88 8.14 -2.39 -0.02 0.86 16
38 H 0.09 0.81 7.20 -2.39 -0.02 0.80 16
39 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16
40 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16
41 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16
42 H 0.07 2.28 8.07 -2.39 -0.02 2.26 16
43 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16
Total: -1.00 -72.14 375.22 0.69 -71.45
By element:
Atomic # 1 Polarization: 33.06 SS G_CDS: -0.41 Total: 32.65 kcal
Atomic # 6 Polarization: -19.99 SS G_CDS: 4.36 Total: -15.63 kcal
Atomic # 7 Polarization: -114.20 SS G_CDS: -4.04 Total: -118.24 kcal
Atomic # 8 Polarization: -20.89 SS G_CDS: -0.07 Total: -20.97 kcal
Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal
Atomic # 16 Polarization: 3.61 SS G_CDS: -1.18 Total: 2.43 kcal
Total: -72.14 0.69 -71.45 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001086253526.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 98.051 kcal
(2) G-P(sol) polarization free energy of solvation -72.142 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.909 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.688 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.454 kcal
(6) G-S(sol) free energy of system = (1) + (5) 26.597 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds