Wall clock time and date at job start Tue Mar 31 2020 12:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86789 * 120.00327 * 2 1 4 4 H 1.48503 * 109.47177 * 270.00139 * 3 2 1 5 5 H 1.48505 * 109.47233 * 30.00276 * 3 2 1 6 6 H 1.48499 * 109.47150 * 150.00458 * 3 2 1 7 7 C 1.38815 * 119.99383 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00207 * 359.97438 * 7 2 1 9 9 N 1.36932 * 119.99845 * 179.97438 * 7 2 1 10 10 C 1.46503 * 120.00156 * 179.97438 * 9 7 2 11 11 H 1.08996 * 112.84857 * 336.19761 * 10 9 7 12 12 C 1.53958 * 113.53552 * 107.50582 * 10 9 7 13 13 C 1.53779 * 87.02186 * 89.18781 * 12 10 9 14 14 H 1.08998 * 113.61415 * 270.77253 * 13 12 10 15 15 C 1.52995 * 113.61192 * 139.94945 * 13 12 10 16 16 N 1.46499 * 109.46977 * 85.86628 * 15 13 12 17 17 C 1.34787 * 119.99958 * 179.97438 * 16 15 13 18 18 O 1.21277 * 119.99622 * 0.02562 * 17 16 15 19 19 C 1.50695 * 119.99976 * 179.97438 * 17 16 15 20 20 H 1.09004 * 115.54503 * 34.33542 * 19 17 16 21 21 C 1.53073 * 117.51651 * 248.61073 * 19 17 16 22 22 C 1.52994 * 117.49955 * 180.02562 * 19 17 16 23 23 H 1.09006 * 117.49992 * 0.02562 * 22 19 17 24 24 C 1.50706 * 117.50161 * 215.00809 * 22 19 17 25 25 C 1.38421 * 122.54153 * 119.82304 * 24 22 19 26 26 C 1.33385 * 114.92097 * 179.76283 * 25 24 22 27 27 S 1.75888 * 109.59417 * 0.47538 * 26 25 24 28 28 C 1.33388 * 122.53725 * 300.11045 * 24 22 19 29 29 C 1.53782 * 113.61563 * 204.99911 * 10 9 7 30 30 H 0.97005 * 119.99292 * 359.97438 * 1 2 3 31 31 H 0.96998 * 119.99851 * 359.97438 * 9 7 2 32 32 H 1.09004 * 113.66404 * 334.66020 * 12 10 9 33 33 H 1.08999 * 113.61009 * 203.71317 * 12 10 9 34 34 H 1.08992 * 109.47444 * 325.86565 * 15 13 12 35 35 H 1.09005 * 109.47042 * 205.86207 * 15 13 12 36 36 H 0.96998 * 120.00384 * 0.02562 * 16 15 13 37 37 H 1.09002 * 117.51185 * 145.04823 * 21 19 17 38 38 H 1.08992 * 117.49166 * 0.02562 * 21 19 17 39 39 H 1.08005 * 122.53740 * 359.97438 * 25 24 22 40 40 H 1.07997 * 125.21048 * 180.20968 * 26 25 24 41 41 H 1.08005 * 125.20504 * 0.02562 * 28 24 22 42 42 H 1.08992 * 113.61506 * 156.33538 * 29 10 9 43 43 H 1.08996 * 113.68965 * 25.44090 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4399 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1375 -0.0005 9 7 3.3795 -1.2024 -0.0011 10 6 4.1120 -2.4711 -0.0011 11 1 3.5278 -3.2970 0.4047 12 6 4.7865 -2.7916 -1.3474 13 6 6.0123 -2.0241 -0.8246 14 1 5.9882 -0.9578 -1.0491 15 6 7.3463 -2.6782 -1.1895 16 7 7.7630 -2.2283 -2.5200 17 6 8.9171 -2.6770 -3.0524 18 8 9.6103 -3.4535 -2.4301 19 6 9.3454 -2.2145 -4.4212 20 1 9.0806 -1.1880 -4.6747 21 6 9.3364 -3.2469 -5.5513 22 6 10.6650 -2.7603 -4.9704 23 1 11.2232 -3.4542 -4.3418 24 6 11.4998 -1.8373 -5.8203 25 6 12.7897 -1.4715 -5.4763 26 6 13.3909 -0.6521 -6.3403 27 16 12.2961 -0.2888 -7.6681 28 6 11.0496 -1.3066 -6.9583 29 6 5.5262 -2.3661 0.5938 30 1 -0.4849 0.8402 0.0004 31 1 3.8646 -0.3624 -0.0014 32 1 4.3054 -2.3159 -2.2020 33 1 4.9702 -3.8549 -1.5015 34 1 7.2309 -3.7620 -1.1922 35 1 8.1022 -2.3951 -0.4570 36 1 7.2087 -1.6069 -3.0175 37 1 9.0658 -2.8996 -6.5485 38 1 9.0203 -4.2604 -5.3045 39 1 13.2740 -1.8256 -4.5782 40 1 14.3946 -0.2669 -6.2379 41 1 10.0694 -1.4756 -7.3792 42 1 5.9125 -3.3128 0.9714 43 1 5.6427 -1.5478 1.3044 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086400963.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:26 Heat of formation + Delta-G solvation = 34.347061 kcal Electronic energy + Delta-G solvation = -23124.610575 eV Core-core repulsion = 19683.362642 eV Total energy + Delta-G solvation = -3441.247933 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.28146 -40.22698 -39.31603 -36.57510 -35.99275 -34.94940 -32.66098 -30.33623 -29.13633 -26.46693 -26.25064 -25.65659 -24.60864 -22.97684 -22.38493 -21.23453 -20.07055 -19.57617 -19.49433 -19.00078 -17.96410 -17.22991 -16.68642 -16.54449 -16.22484 -16.00192 -15.65260 -15.07955 -14.86743 -14.68363 -14.56130 -14.10834 -14.05499 -13.78875 -13.61036 -13.34840 -13.11165 -13.09673 -13.01518 -12.71404 -12.65270 -12.24728 -11.90544 -11.76262 -11.67969 -11.59325 -11.54759 -11.47583 -11.06610 -10.91972 -10.76954 -10.06972 -9.70213 -9.29550 -9.22000 -8.02670 -5.36295 0.06443 0.76425 1.06700 1.37625 1.39792 1.41314 1.48785 1.70280 2.20332 2.48144 2.95668 3.27671 3.51337 3.56721 3.68376 3.74297 3.80005 3.91834 4.01169 4.11708 4.16180 4.27626 4.32050 4.37604 4.46257 4.64226 4.70483 4.76970 4.82830 4.90980 4.93043 4.96896 4.99791 5.08631 5.21688 5.27098 5.32764 5.42960 5.49890 5.54704 5.56771 5.80912 6.22703 6.54320 7.07856 7.21963 7.84743 8.03372 9.18803 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.017581 B = 0.002131 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.226963 B =13134.732098 C =14068.482566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.066 4.066 3 Si 0.956 3.044 4 H -0.276 1.276 5 H -0.298 1.298 6 H -0.251 1.251 7 C -0.232 4.232 8 H 0.056 0.944 9 N -0.733 5.733 10 C 0.145 3.855 11 H 0.057 0.943 12 C -0.153 4.153 13 C -0.104 4.104 14 H 0.090 0.910 15 C 0.139 3.861 16 N -0.714 5.714 17 C 0.538 3.462 18 O -0.585 6.585 19 C -0.180 4.180 20 H 0.142 0.858 21 C -0.127 4.127 22 C -0.067 4.067 23 H 0.110 0.890 24 C -0.081 4.081 25 C -0.144 4.144 26 C -0.213 4.213 27 S 0.103 5.897 28 C -0.216 4.216 29 C -0.134 4.134 30 H 0.258 0.742 31 H 0.367 0.633 32 H 0.054 0.946 33 H 0.090 0.910 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.413 0.587 37 H 0.130 0.870 38 H 0.101 0.899 39 H 0.144 0.856 40 H 0.183 0.817 41 H 0.182 0.818 42 H 0.105 0.895 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.594 -2.529 -15.517 32.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.258 4.258 3 Si 0.783 3.217 4 H -0.202 1.202 5 H -0.225 1.225 6 H -0.175 1.175 7 C -0.363 4.363 8 H 0.074 0.926 9 N -0.375 5.375 10 C 0.035 3.965 11 H 0.075 0.925 12 C -0.193 4.193 13 C -0.123 4.123 14 H 0.108 0.892 15 C 0.015 3.985 16 N -0.364 5.364 17 C 0.326 3.674 18 O -0.466 6.466 19 C -0.201 4.201 20 H 0.160 0.840 21 C -0.165 4.165 22 C -0.088 4.088 23 H 0.128 0.872 24 C -0.094 4.094 25 C -0.174 4.174 26 C -0.348 4.348 27 S 0.367 5.633 28 C -0.351 4.351 29 C -0.173 4.173 30 H 0.066 0.934 31 H 0.200 0.800 32 H 0.073 0.927 33 H 0.109 0.891 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.249 0.751 37 H 0.148 0.852 38 H 0.120 0.880 39 H 0.162 0.838 40 H 0.200 0.800 41 H 0.199 0.801 42 H 0.124 0.876 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 28.959 -2.244 -16.370 33.341 hybrid contribution -0.544 0.459 1.363 1.538 sum 28.415 -1.785 -15.007 32.184 Atomic orbital electron populations 1.69895 1.07201 1.26689 1.59682 1.25537 0.96146 1.01367 1.02721 0.85390 0.78615 0.79458 0.78189 1.20164 1.22514 1.17548 1.19063 0.82611 0.93439 1.41170 0.92579 1.42431 1.02237 1.03510 1.89331 1.21388 0.91544 0.87805 0.95742 0.92485 1.23717 0.96491 1.00169 0.98941 1.22569 0.92438 0.99868 0.97438 0.89155 1.21302 0.94981 0.98831 0.83380 1.45933 1.22772 1.48402 1.19315 1.20068 0.80370 0.79760 0.87197 1.90672 1.54968 1.37227 1.63740 1.22379 1.03667 1.01932 0.92120 0.83991 1.23213 0.97925 0.98227 0.97105 1.20605 0.88482 0.99540 1.00208 0.87228 1.18231 0.94994 1.00372 0.95773 1.20221 0.94856 1.00528 1.01808 1.25889 1.04962 1.05312 0.98667 1.84310 1.05942 1.47513 1.25484 1.25709 1.04744 1.04401 1.00233 1.23360 0.95491 1.02886 0.95599 0.93357 0.79967 0.92691 0.89148 0.91605 0.91864 0.75054 0.85182 0.88039 0.83816 0.79960 0.80060 0.87632 0.91562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.58 13.97 21.65 0.30 -62.28 16 2 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 3 Si 0.96 44.35 27.73 68.60 1.90 46.25 16 4 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 5 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 6 H -0.25 -10.41 6.52 99.48 0.65 -9.76 16 7 C -0.23 -12.96 10.45 84.03 0.88 -12.08 16 8 H 0.06 3.46 8.06 -2.91 -0.02 3.44 16 9 N -0.73 -32.71 5.11 -320.16 -1.64 -34.35 16 10 C 0.14 5.11 4.57 45.58 0.21 5.32 16 11 H 0.06 2.15 8.10 -2.39 -0.02 2.13 16 12 C -0.15 -4.37 7.44 31.18 0.23 -4.14 16 13 C -0.10 -2.52 3.62 -10.27 -0.04 -2.56 16 14 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 15 C 0.14 3.06 5.50 86.38 0.47 3.54 16 16 N -0.71 -14.29 5.56 -463.07 -2.57 -16.86 16 17 C 0.54 12.14 7.61 87.65 0.67 12.81 16 18 O -0.59 -17.82 16.26 -3.02 -0.05 -17.86 16 19 C -0.18 -2.87 5.85 -11.52 -0.07 -2.94 16 20 H 0.14 1.77 8.14 -2.38 -0.02 1.75 16 21 C -0.13 -1.65 9.63 30.60 0.29 -1.36 16 22 C -0.07 -1.10 5.66 -11.56 -0.07 -1.17 16 23 H 0.11 2.20 7.67 -2.38 -0.02 2.19 16 24 C -0.08 -1.24 5.52 -20.92 -0.12 -1.36 16 25 C -0.14 -2.16 9.98 21.21 0.21 -1.94 16 26 C -0.21 -2.65 11.23 66.72 0.75 -1.90 16 27 S 0.10 1.24 23.34 -56.49 -1.32 -0.08 16 28 C -0.22 -2.72 10.39 66.72 0.69 -2.03 16 29 C -0.13 -3.57 7.39 31.12 0.23 -3.34 16 30 H 0.26 15.60 8.31 -92.70 -0.77 14.83 16 31 H 0.37 15.55 5.76 -92.71 -0.53 15.01 16 32 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 33 H 0.09 2.28 7.92 -2.39 -0.02 2.26 16 34 H 0.07 1.52 7.87 -2.39 -0.02 1.51 16 35 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 36 H 0.41 6.63 8.47 -92.71 -0.79 5.85 16 37 H 0.13 1.05 6.55 -2.39 -0.02 1.04 16 38 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 40 H 0.18 1.43 8.06 -2.91 -0.02 1.41 16 41 H 0.18 1.52 6.64 -2.91 -0.02 1.51 16 42 H 0.11 2.35 8.10 -2.39 -0.02 2.33 16 43 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -71.86 371.47 1.10 -70.76 By element: Atomic # 1 Polarization: 31.32 SS G_CDS: -0.34 Total: 30.97 kcal Atomic # 6 Polarization: -21.37 SS G_CDS: 4.82 Total: -16.55 kcal Atomic # 7 Polarization: -109.58 SS G_CDS: -3.91 Total: -113.48 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -0.05 Total: -17.86 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.90 Total: 46.25 kcal Atomic # 16 Polarization: 1.24 SS G_CDS: -1.32 Total: -0.08 kcal Total: -71.86 1.10 -70.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086400963.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.107 kcal (2) G-P(sol) polarization free energy of solvation -71.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds