Wall clock time and date at job start Tue Mar 31 2020 12:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.08998 * 112.85162 * 25.32541 * 10 9 7 12 12 C 1.53781 * 113.61544 * 156.52457 * 10 9 7 13 13 C 1.53787 * 87.07822 * 89.11527 * 12 10 9 14 14 H 1.08997 * 113.61417 * 270.79464 * 13 12 10 15 15 C 1.53002 * 113.61147 * 139.98493 * 13 12 10 16 16 N 1.46499 * 109.46991 * 175.00047 * 15 13 12 17 17 C 1.34776 * 119.99930 * 180.02562 * 16 15 13 18 18 O 1.21700 * 120.00318 * 359.97438 * 17 16 15 19 19 C 1.46586 * 119.99751 * 180.02562 * 17 16 15 20 20 S 1.75831 * 125.45930 * 359.68716 * 19 17 16 21 21 C 1.70624 * 91.56241 * 179.91637 * 20 19 17 22 22 C 1.33819 * 110.95397 * 0.35804 * 21 20 19 23 23 C 1.36651 * 125.45562 * 179.97438 * 19 17 16 24 24 C 1.50703 * 123.35312 * 359.96995 * 23 19 17 25 25 C 1.52997 * 117.49996 * 188.74835 * 24 23 19 26 26 C 1.53000 * 117.49639 * 120.08971 * 24 23 19 27 27 C 1.53788 * 113.61484 * 254.13346 * 10 9 7 28 28 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 29 29 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 30 30 H 1.09002 * 113.61674 * 203.66276 * 12 10 9 31 31 H 1.08993 * 113.61805 * 334.48254 * 12 10 9 32 32 H 1.09000 * 109.47187 * 294.99679 * 15 13 12 33 33 H 1.09001 * 109.47542 * 54.99393 * 15 13 12 34 34 H 0.96992 * 120.00012 * 359.97438 * 16 15 13 35 35 H 1.08001 * 124.52388 * 180.02562 * 21 20 19 36 36 H 1.07993 * 122.44769 * 179.70513 * 22 21 20 37 37 H 1.08999 * 115.55163 * 334.42552 * 24 23 19 38 38 H 1.09000 * 117.49914 * 0.02562 * 25 24 23 39 39 H 1.08997 * 117.49816 * 145.02819 * 25 24 23 40 40 H 1.09003 * 117.50292 * 214.98610 * 26 24 23 41 41 H 1.09007 * 117.50123 * 359.97438 * 26 24 23 42 42 H 1.08999 * 113.61259 * 25.42799 * 27 10 9 43 43 H 1.08991 * 113.61569 * 156.33210 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 3.0556 -3.5696 0.4289 12 6 1.2463 -4.8367 0.5585 13 6 0.7405 -5.0673 -0.8754 14 1 -0.1655 -4.5102 -1.1137 15 6 0.6485 -6.5447 -1.2626 16 7 0.0482 -6.6642 -2.5936 17 6 -0.1337 -7.8809 -3.1440 18 8 0.2011 -8.8803 -2.5355 19 6 -0.7339 -8.0004 -4.4760 20 16 -1.2739 -6.6584 -5.4756 21 6 -1.7702 -7.7206 -6.7152 22 6 -1.5425 -8.9943 -6.3738 23 6 -0.9684 -9.1729 -5.1375 24 6 -0.6311 -10.5270 -4.5685 25 6 -0.7587 -11.7356 -5.4979 26 6 -1.7800 -11.5195 -4.3784 27 6 2.0334 -4.3823 -1.3574 28 1 -0.4850 -0.8401 -0.0004 29 1 0.3556 -2.3880 -0.0016 30 1 1.8640 -5.6499 0.9397 31 1 0.4641 -4.5368 1.2559 32 1 1.6477 -6.9801 -1.2743 33 1 0.0306 -7.0729 -0.5364 34 1 -0.2190 -5.8677 -3.0783 35 1 -2.2142 -7.4071 -7.6485 36 1 -1.7914 -9.8213 -7.0221 37 1 0.1727 -10.5407 -3.8324 38 1 -1.0861 -11.5513 -6.5211 39 1 -0.0390 -12.5446 -5.3731 40 1 -1.7318 -12.1864 -3.5176 41 1 -2.7798 -11.1929 -4.6645 42 1 1.8853 -3.7155 -2.2068 43 1 2.8659 -5.0713 -1.4990 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086547605.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:49 Heat of formation + Delta-G solvation = 50.846031 kcal Electronic energy + Delta-G solvation = -23551.579250 eV Core-core repulsion = 20111.046767 eV Total energy + Delta-G solvation = -3440.532484 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.18982 -39.09059 -38.28408 -35.90380 -34.78951 -33.52892 -30.65773 -29.77895 -27.48454 -25.27234 -25.12350 -23.50830 -22.76135 -22.35021 -22.04108 -21.30094 -19.28917 -18.47900 -18.00575 -17.39066 -16.78675 -15.92180 -15.68044 -15.40324 -15.01710 -14.90722 -14.33697 -14.05405 -13.86207 -13.67369 -13.55906 -13.42520 -13.01783 -12.68150 -12.26025 -12.12122 -12.04756 -11.76468 -11.50119 -11.29274 -10.96337 -10.92122 -10.77804 -10.60880 -10.38608 -10.17168 -9.98727 -9.86576 -9.69693 -9.26000 -9.17346 -8.95241 -8.89641 -8.64367 -7.09739 -6.15496 -3.15948 0.23606 1.20362 1.59515 2.04691 3.02876 3.07504 3.49541 3.52757 3.70280 3.74379 4.37905 4.53706 4.62203 4.67065 4.71505 4.81853 4.94209 4.97160 5.03901 5.12843 5.18898 5.35888 5.44376 5.49899 5.53743 5.56232 5.69372 5.75471 5.78405 5.84305 5.86443 5.95285 5.98087 6.11788 6.22261 6.25352 6.33429 6.48713 6.63537 6.76632 6.92346 7.37984 7.78601 8.07294 8.70063 9.17059 10.03229 10.17632 11.32497 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.021855 B = 0.002436 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.861450 B =11492.697967 C =12428.608947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.044 4.044 3 Si 1.081 2.919 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.333 4.333 8 H 0.066 0.934 9 N -0.717 5.717 10 C 0.173 3.827 11 H 0.063 0.937 12 C -0.147 4.147 13 C -0.121 4.121 14 H 0.091 0.909 15 C 0.133 3.867 16 N -0.721 5.721 17 C 0.590 3.410 18 O -0.530 6.530 19 C -0.267 4.267 20 S 0.208 5.792 21 C -0.228 4.228 22 C -0.149 4.149 23 C 0.008 3.992 24 C -0.102 4.102 25 C -0.178 4.178 26 C -0.163 4.163 27 C -0.168 4.168 28 H 0.255 0.745 29 H 0.368 0.632 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.399 0.601 35 H 0.170 0.830 36 H 0.144 0.856 37 H 0.137 0.863 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.066 0.934 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.706 -20.894 -13.102 24.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.242 4.242 3 Si 0.911 3.089 4 H -0.210 1.210 5 H -0.222 1.222 6 H -0.222 1.222 7 C -0.464 4.464 8 H 0.084 0.916 9 N -0.357 5.357 10 C 0.060 3.940 11 H 0.081 0.919 12 C -0.186 4.186 13 C -0.140 4.140 14 H 0.109 0.891 15 C 0.010 3.990 16 N -0.371 5.371 17 C 0.376 3.624 18 O -0.409 6.409 19 C -0.388 4.388 20 S 0.477 5.523 21 C -0.366 4.366 22 C -0.181 4.181 23 C -0.007 4.007 24 C -0.122 4.122 25 C -0.215 4.215 26 C -0.200 4.200 27 C -0.209 4.209 28 H 0.066 0.934 29 H 0.201 0.799 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.233 0.767 35 H 0.187 0.813 36 H 0.162 0.838 37 H 0.154 0.846 38 H 0.113 0.887 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.112 0.888 42 H 0.085 0.915 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.419 -18.226 -12.465 22.344 hybrid contribution -0.372 -2.856 -0.741 2.974 sum -3.790 -21.082 -13.206 25.164 Atomic orbital electron populations 1.70897 1.06045 1.28398 1.53432 1.25811 0.97043 1.01072 1.00277 0.83234 0.74223 0.75516 0.75918 1.21020 1.22194 1.22215 1.20081 0.92126 0.85629 1.48590 0.91578 1.42170 1.04688 1.00425 1.88444 1.20979 0.95014 0.85126 0.92835 0.91899 1.23431 1.00585 0.99786 0.94844 1.22774 0.99563 0.93087 0.98575 0.89098 1.21509 0.98173 0.97126 0.82173 1.45956 1.63518 1.07575 1.20075 1.16900 0.78147 0.83703 0.83658 1.90757 1.51505 1.36320 1.62345 1.24430 1.15708 0.97400 1.01225 1.83244 1.54642 1.07824 1.06618 1.25260 1.08112 0.97889 1.05320 1.19847 1.03893 0.97226 0.97094 1.18681 0.95756 0.93502 0.92762 1.20998 1.02761 0.85761 1.02712 1.23065 1.02949 0.99702 0.95774 1.22958 0.94550 1.01806 1.00731 1.23931 0.95499 0.99587 1.01889 0.93426 0.79871 0.90204 0.91426 0.91226 0.91504 0.76685 0.81268 0.83847 0.84577 0.88689 0.88332 0.88270 0.88817 0.91503 0.91189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.73 13.70 55.49 0.76 -27.97 16 2 C -0.04 -1.28 5.50 -17.43 -0.10 -1.37 16 3 Si 1.08 25.59 29.92 -169.99 -5.09 20.50 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.33 -9.24 9.97 -15.06 -0.15 -9.39 16 8 H 0.07 1.81 7.83 -52.49 -0.41 1.39 16 9 N -0.72 -17.54 5.31 -52.64 -0.28 -17.82 16 10 C 0.17 3.37 4.55 -67.12 -0.31 3.06 16 11 H 0.06 1.26 8.11 -51.93 -0.42 0.83 16 12 C -0.15 -2.32 7.38 -25.92 -0.19 -2.52 16 13 C -0.12 -1.80 3.65 -89.66 -0.33 -2.13 16 14 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 15 C 0.13 1.79 5.51 -4.04 -0.02 1.77 16 16 N -0.72 -9.38 5.55 -61.65 -0.34 -9.72 16 17 C 0.59 8.30 7.78 -12.89 -0.10 8.20 16 18 O -0.53 -8.72 14.30 5.19 0.07 -8.65 16 19 C -0.27 -3.23 6.45 -36.79 -0.24 -3.47 16 20 S 0.21 1.96 22.16 -107.50 -2.38 -0.43 16 21 C -0.23 -1.85 10.92 29.18 0.32 -1.53 16 22 C -0.15 -1.33 9.46 -41.41 -0.39 -1.72 16 23 C 0.01 0.09 5.60 -105.47 -0.59 -0.50 16 24 C -0.10 -1.11 5.44 -91.77 -0.50 -1.61 16 25 C -0.18 -1.41 9.95 -26.70 -0.27 -1.67 16 26 C -0.16 -1.44 10.22 -26.69 -0.27 -1.71 16 27 C -0.17 -2.80 7.45 -25.77 -0.19 -2.99 16 28 H 0.25 7.61 6.77 -40.82 -0.28 7.33 16 29 H 0.37 9.23 6.73 -40.82 -0.27 8.95 16 30 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.07 0.96 7.85 -51.93 -0.41 0.55 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.40 4.72 7.59 -40.82 -0.31 4.41 16 35 H 0.17 0.93 8.06 -52.49 -0.42 0.50 16 36 H 0.14 0.98 6.61 -52.49 -0.35 0.63 16 37 H 0.14 1.76 6.17 -51.93 -0.32 1.44 16 38 H 0.09 0.63 6.56 -51.93 -0.34 0.29 16 39 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.07 1.05 7.90 -51.93 -0.41 0.64 16 LS Contribution 367.35 15.07 5.54 5.54 Total: -1.00 -32.27 367.35 -11.16 -43.43 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -6.12 Total: 12.69 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: -3.32 Total: -17.57 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: 0.14 Total: -55.51 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: 0.07 Total: -8.65 kcal Atomic # 14 Polarization: 25.59 SS G_CDS: -5.09 Total: 20.50 kcal Atomic # 16 Polarization: 1.96 SS G_CDS: -2.38 Total: -0.43 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.27 -11.16 -43.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086547605.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.277 kcal (2) G-P(sol) polarization free energy of solvation -32.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds