Wall clock time and date at job start Tue Mar 31 2020 12:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.08998 * 112.85162 * 25.32541 * 10 9 7 12 12 C 1.53781 * 113.61544 * 156.52457 * 10 9 7 13 13 C 1.53787 * 87.07822 * 89.11527 * 12 10 9 14 14 H 1.08997 * 113.61417 * 270.79464 * 13 12 10 15 15 C 1.53002 * 113.61147 * 139.98493 * 13 12 10 16 16 N 1.46499 * 109.46991 * 175.00047 * 15 13 12 17 17 C 1.34776 * 119.99930 * 180.02562 * 16 15 13 18 18 O 1.21700 * 120.00318 * 359.97438 * 17 16 15 19 19 C 1.46586 * 119.99751 * 180.02562 * 17 16 15 20 20 S 1.75831 * 125.45930 * 359.68716 * 19 17 16 21 21 C 1.70624 * 91.56241 * 179.91637 * 20 19 17 22 22 C 1.33819 * 110.95397 * 0.35804 * 21 20 19 23 23 C 1.36651 * 125.45562 * 179.97438 * 19 17 16 24 24 C 1.50703 * 123.35312 * 359.96995 * 23 19 17 25 25 C 1.52997 * 117.49996 * 188.74835 * 24 23 19 26 26 C 1.53000 * 117.49639 * 120.08971 * 24 23 19 27 27 C 1.53788 * 113.61484 * 254.13346 * 10 9 7 28 28 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 29 29 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 30 30 H 1.09002 * 113.61674 * 203.66276 * 12 10 9 31 31 H 1.08993 * 113.61805 * 334.48254 * 12 10 9 32 32 H 1.09000 * 109.47187 * 294.99679 * 15 13 12 33 33 H 1.09001 * 109.47542 * 54.99393 * 15 13 12 34 34 H 0.96992 * 120.00012 * 359.97438 * 16 15 13 35 35 H 1.08001 * 124.52388 * 180.02562 * 21 20 19 36 36 H 1.07993 * 122.44769 * 179.70513 * 22 21 20 37 37 H 1.08999 * 115.55163 * 334.42552 * 24 23 19 38 38 H 1.09000 * 117.49914 * 0.02562 * 25 24 23 39 39 H 1.08997 * 117.49816 * 145.02819 * 25 24 23 40 40 H 1.09003 * 117.50292 * 214.98610 * 26 24 23 41 41 H 1.09007 * 117.50123 * 359.97438 * 26 24 23 42 42 H 1.08999 * 113.61259 * 25.42799 * 27 10 9 43 43 H 1.08991 * 113.61569 * 156.33210 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 3.0556 -3.5696 0.4289 12 6 1.2463 -4.8367 0.5585 13 6 0.7405 -5.0673 -0.8754 14 1 -0.1655 -4.5102 -1.1137 15 6 0.6485 -6.5447 -1.2626 16 7 0.0482 -6.6642 -2.5936 17 6 -0.1337 -7.8809 -3.1440 18 8 0.2011 -8.8803 -2.5355 19 6 -0.7339 -8.0004 -4.4760 20 16 -1.2739 -6.6584 -5.4756 21 6 -1.7702 -7.7206 -6.7152 22 6 -1.5425 -8.9943 -6.3738 23 6 -0.9684 -9.1729 -5.1375 24 6 -0.6311 -10.5270 -4.5685 25 6 -0.7587 -11.7356 -5.4979 26 6 -1.7800 -11.5195 -4.3784 27 6 2.0334 -4.3823 -1.3574 28 1 -0.4850 -0.8401 -0.0004 29 1 0.3556 -2.3880 -0.0016 30 1 1.8640 -5.6499 0.9397 31 1 0.4641 -4.5368 1.2559 32 1 1.6477 -6.9801 -1.2743 33 1 0.0306 -7.0729 -0.5364 34 1 -0.2190 -5.8677 -3.0783 35 1 -2.2142 -7.4071 -7.6485 36 1 -1.7914 -9.8213 -7.0221 37 1 0.1727 -10.5407 -3.8324 38 1 -1.0861 -11.5513 -6.5211 39 1 -0.0390 -12.5446 -5.3731 40 1 -1.7318 -12.1864 -3.5176 41 1 -2.7798 -11.1929 -4.6645 42 1 1.8853 -3.7155 -2.2068 43 1 2.8659 -5.0713 -1.4990 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086547605.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:49 Heat of formation + Delta-G solvation = 31.582670 kcal Electronic energy + Delta-G solvation = -23552.414573 eV Core-core repulsion = 20111.046767 eV Total energy + Delta-G solvation = -3441.367806 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.19169 -40.26023 -39.36190 -36.59980 -36.25751 -35.20798 -32.05296 -31.09251 -28.73380 -26.56339 -26.19671 -25.44935 -23.54629 -23.24428 -23.04918 -22.31491 -20.45968 -19.83559 -19.27554 -18.81165 -17.61874 -16.94812 -16.80444 -16.74403 -16.38372 -15.90926 -15.64185 -15.44191 -15.18693 -14.77348 -14.66850 -14.65566 -14.04979 -13.68296 -13.44284 -13.36027 -12.98401 -12.87342 -12.80822 -12.54368 -12.40148 -12.04332 -11.95038 -11.78552 -11.64206 -11.58735 -11.37129 -11.33525 -11.04753 -10.92214 -10.79195 -10.28803 -9.76483 -9.36947 -9.12140 -8.39994 -5.34133 -0.54925 0.45295 0.88673 1.30817 1.58941 1.68488 1.84907 2.04043 2.05802 2.70641 3.04052 3.37696 3.55641 3.61547 3.65477 3.70602 3.84801 3.91259 3.97393 4.05984 4.16977 4.20452 4.28009 4.33203 4.53584 4.61052 4.66410 4.73951 4.82735 4.86440 4.87530 4.99121 5.00825 5.06751 5.14838 5.21798 5.22969 5.29200 5.38411 5.47376 5.48059 5.65229 6.34850 6.48892 7.03170 7.09085 7.99483 8.10209 9.11710 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.021855 B = 0.002436 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.861450 B =11492.697967 C =12428.608947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.975 5.975 2 C -0.104 4.104 3 Si 1.127 2.873 4 H -0.293 1.293 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.332 4.332 8 H 0.067 0.933 9 N -0.732 5.732 10 C 0.148 3.852 11 H 0.057 0.943 12 C -0.131 4.131 13 C -0.104 4.104 14 H 0.080 0.920 15 C 0.142 3.858 16 N -0.719 5.719 17 C 0.587 3.413 18 O -0.563 6.563 19 C -0.308 4.308 20 S 0.214 5.786 21 C -0.210 4.210 22 C -0.159 4.159 23 C 0.010 3.990 24 C -0.132 4.132 25 C -0.156 4.156 26 C -0.161 4.161 27 C -0.154 4.154 28 H 0.244 0.756 29 H 0.361 0.639 30 H 0.108 0.892 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.404 0.596 35 H 0.202 0.798 36 H 0.169 0.831 37 H 0.107 0.893 38 H 0.114 0.886 39 H 0.107 0.893 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.046 0.954 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.597 -22.084 -14.899 26.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.295 4.295 3 Si 0.952 3.048 4 H -0.219 1.219 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.464 4.464 8 H 0.085 0.915 9 N -0.372 5.372 10 C 0.039 3.961 11 H 0.075 0.925 12 C -0.171 4.171 13 C -0.123 4.123 14 H 0.098 0.902 15 C 0.019 3.981 16 N -0.369 5.369 17 C 0.375 3.625 18 O -0.444 6.444 19 C -0.428 4.428 20 S 0.483 5.517 21 C -0.347 4.347 22 C -0.189 4.189 23 C -0.006 4.006 24 C -0.152 4.152 25 C -0.192 4.192 26 C -0.198 4.198 27 C -0.194 4.194 28 H 0.055 0.945 29 H 0.193 0.807 30 H 0.127 0.873 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.239 0.761 35 H 0.219 0.781 36 H 0.186 0.814 37 H 0.125 0.875 38 H 0.132 0.868 39 H 0.125 0.875 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.065 0.935 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.279 -19.459 -14.268 24.351 hybrid contribution -0.380 -2.588 -0.217 2.625 sum -3.660 -22.047 -14.484 26.632 Atomic orbital electron populations 1.70999 1.07139 1.27892 1.56253 1.27194 0.97134 1.04632 1.00588 0.82629 0.73381 0.71633 0.77149 1.21947 1.20420 1.20374 1.20413 0.92391 0.86954 1.46593 0.91518 1.42301 1.04512 1.01379 1.88987 1.21308 0.94953 0.84609 0.95270 0.92453 1.23329 0.99995 0.98610 0.95133 1.22559 0.98263 0.93758 0.97683 0.90162 1.21347 0.98428 0.95703 0.82605 1.45913 1.63377 1.07755 1.19880 1.17220 0.77664 0.83268 0.84371 1.90733 1.53044 1.37186 1.63487 1.24345 1.18202 0.99044 1.01159 1.83203 1.54510 1.07256 1.06720 1.25687 1.06209 0.97212 1.05621 1.20042 1.04007 0.98388 0.96504 1.18975 0.94953 0.93257 0.93443 1.20921 1.03266 0.86963 1.04038 1.23182 1.02048 0.97861 0.96157 1.23026 0.94543 1.00846 1.01433 1.23764 0.97269 0.99204 0.99188 0.94540 0.80667 0.87322 0.92224 0.90985 0.91387 0.76070 0.78091 0.81373 0.87481 0.86762 0.87459 0.88214 0.88112 0.93489 0.88899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.62 13.70 21.65 0.30 -60.32 16 2 C -0.10 -6.02 5.50 84.86 0.47 -5.56 16 3 Si 1.13 51.61 29.92 68.60 2.05 53.66 16 4 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 5 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 6 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 7 C -0.33 -18.56 9.97 84.03 0.84 -17.72 16 8 H 0.07 3.64 7.83 -2.91 -0.02 3.62 16 9 N -0.73 -36.34 5.31 -320.46 -1.70 -38.04 16 10 C 0.15 5.76 4.55 45.52 0.21 5.96 16 11 H 0.06 2.27 8.11 -2.39 -0.02 2.25 16 12 C -0.13 -4.03 7.38 31.12 0.23 -3.80 16 13 C -0.10 -3.02 3.65 -10.17 -0.04 -3.06 16 14 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 15 C 0.14 3.74 5.51 86.38 0.48 4.21 16 16 N -0.72 -18.68 5.55 -467.17 -2.59 -21.28 16 17 C 0.59 16.78 7.78 86.42 0.67 17.45 16 18 O -0.56 -19.09 14.30 -4.35 -0.06 -19.16 16 19 C -0.31 -7.37 6.45 24.08 0.16 -7.21 16 20 S 0.21 3.77 22.16 -56.49 -1.25 2.52 16 21 C -0.21 -2.79 10.92 66.81 0.73 -2.06 16 22 C -0.16 -2.42 9.46 21.08 0.20 -2.22 16 23 C 0.01 0.21 5.60 -20.42 -0.11 0.09 16 24 C -0.13 -2.80 5.44 -11.54 -0.06 -2.86 16 25 C -0.16 -2.15 9.95 30.62 0.30 -1.85 16 26 C -0.16 -2.65 10.22 30.62 0.31 -2.34 16 27 C -0.15 -5.02 7.45 31.21 0.23 -4.79 16 28 H 0.24 15.08 6.77 -92.71 -0.63 14.45 16 29 H 0.36 18.66 6.73 -92.71 -0.62 18.03 16 30 H 0.11 2.73 8.10 -2.39 -0.02 2.71 16 31 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.07 1.89 7.85 -2.39 -0.02 1.87 16 33 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.40 9.56 7.59 -92.71 -0.70 8.86 16 35 H 0.20 1.34 8.06 -2.91 -0.02 1.31 16 36 H 0.17 1.65 6.61 -2.91 -0.02 1.63 16 37 H 0.11 2.92 6.17 -2.39 -0.01 2.90 16 38 H 0.11 1.13 6.56 -2.39 -0.02 1.12 16 39 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.10 1.50 8.14 -2.38 -0.02 1.48 16 42 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.09 2.62 7.90 -2.39 -0.02 2.60 16 Total: -1.00 -71.24 367.35 1.21 -70.03 By element: Atomic # 1 Polarization: 38.49 SS G_CDS: -0.14 Total: 38.34 kcal Atomic # 6 Polarization: -30.36 SS G_CDS: 4.61 Total: -25.75 kcal Atomic # 7 Polarization: -115.64 SS G_CDS: -4.00 Total: -119.64 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.06 Total: -19.16 kcal Atomic # 14 Polarization: 51.61 SS G_CDS: 2.05 Total: 53.66 kcal Atomic # 16 Polarization: 3.77 SS G_CDS: -1.25 Total: 2.52 kcal Total: -71.24 1.21 -70.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086547605.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.609 kcal (2) G-P(sol) polarization free energy of solvation -71.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds