Wall clock time and date at job start Tue Mar 31 2020 12:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53785 * 111.85513 * 2 1 4 4 N 1.47218 * 106.37318 * 104.04254 * 3 2 1 5 5 C 1.36936 * 126.70255 * 211.27132 * 4 3 2 6 6 H 1.07995 * 120.00296 * 0.02562 * 5 4 3 7 7 C 1.38815 * 119.99811 * 180.02562 * 5 4 3 8 8 N 1.31620 * 120.00235 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99963 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47117 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47437 * 119.99728 * 9 7 5 12 12 H 1.48499 * 109.47211 * 240.00379 * 9 7 5 13 13 C 1.47211 * 106.59437 * 31.27795 * 4 3 2 14 14 C 1.53782 * 106.37618 * 328.72142 * 13 4 3 15 15 H 1.09002 * 111.85855 * 256.92563 * 14 13 4 16 16 C 1.54077 * 109.53479 * 131.53865 * 14 13 4 17 17 N 1.47214 * 106.22255 * 266.28947 * 16 14 13 18 18 C 1.34780 * 126.70252 * 148.66434 * 17 16 14 19 19 O 1.21281 * 119.99934 * 179.68187 * 18 17 16 20 20 C 1.50699 * 119.99874 * 359.68482 * 18 17 16 21 21 C 1.50702 * 109.46949 * 179.97438 * 20 18 17 22 22 C 1.38427 * 122.53599 * 90.00423 * 21 20 18 23 23 C 1.33387 * 114.91991 * 180.26783 * 22 21 20 24 24 S 1.75886 * 109.59194 * 359.63459 * 23 22 21 25 25 C 1.33381 * 122.54027 * 270.02305 * 21 20 18 26 26 C 1.47215 * 106.59545 * 328.40220 * 17 16 14 27 27 H 1.08995 * 109.46442 * 182.04369 * 1 2 3 28 28 H 1.09005 * 109.46756 * 302.03984 * 1 2 3 29 29 H 1.08994 * 109.47101 * 62.04196 * 1 2 3 30 30 H 1.08995 * 110.07908 * 223.27134 * 3 2 1 31 31 H 1.08995 * 110.07489 * 344.76478 * 3 2 1 32 32 H 0.96998 * 120.00285 * 179.97438 * 8 7 5 33 33 H 1.09000 * 110.08063 * 87.95296 * 13 4 3 34 34 H 1.09007 * 110.07424 * 209.43728 * 13 4 3 35 35 H 1.08996 * 110.22386 * 147.06998 * 16 14 13 36 36 H 1.09002 * 110.07733 * 25.42936 * 16 14 13 37 37 H 1.09003 * 109.46856 * 59.99910 * 20 18 17 38 38 H 1.08990 * 109.47196 * 299.99747 * 20 18 17 39 39 H 1.08002 * 122.53759 * 359.97438 * 22 21 20 40 40 H 1.08002 * 125.20431 * 179.75072 * 23 22 21 41 41 H 1.08001 * 125.20464 * 359.94574 * 25 21 20 42 42 H 1.09006 * 110.07425 * 150.74550 * 26 17 16 43 43 H 1.09001 * 110.07608 * 272.28570 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1025 1.4273 0.0000 4 7 2.5751 1.6849 1.3703 5 6 2.6003 2.8934 2.0137 6 1 2.2482 3.7811 1.5094 7 6 3.0784 2.9775 3.3142 8 7 3.5080 1.8957 3.9287 9 14 3.1134 4.6262 4.1917 10 1 2.5816 5.6787 3.2891 11 1 2.2757 4.5534 5.4156 12 1 4.5114 4.9573 4.5676 13 6 3.0155 0.3895 1.9136 14 6 2.1289 -0.6807 1.2552 15 1 1.3543 -1.0392 1.9332 16 6 3.0130 -1.8215 0.7157 17 7 3.2841 -1.4996 -0.6950 18 6 4.3945 -1.8099 -1.3930 19 8 4.4878 -1.4879 -2.5586 20 6 5.5202 -2.5568 -0.7252 21 6 6.6341 -2.7773 -1.7159 22 6 7.6681 -1.8730 -1.8871 23 6 8.5691 -2.2173 -2.8085 24 16 8.1283 -3.7669 -3.5143 25 6 6.6982 -3.8584 -2.4945 26 6 2.1026 -0.7784 -1.1963 27 1 -0.3632 -1.0270 0.0366 28 1 -0.3633 0.5452 0.8712 29 1 -0.3633 0.4818 -0.9077 30 1 2.9336 1.4972 -0.7017 31 1 1.3251 2.1423 -0.2690 32 1 3.8425 1.9545 4.8373 33 1 4.0617 0.2147 1.6628 34 1 2.8827 0.3729 2.9954 35 1 2.4861 -2.7729 0.7879 36 1 3.9474 -1.8673 1.2752 37 1 5.1556 -3.5201 -0.3684 38 1 5.8929 -1.9747 0.1175 39 1 7.7373 -0.9558 -1.3211 40 1 9.4375 -1.6347 -3.0784 41 1 5.9819 -4.6667 -2.4978 42 1 2.3938 -0.0876 -1.9875 43 1 1.3630 -1.4863 -1.5705 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091453351.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:51 Heat of formation + Delta-G solvation = 13.710024 kcal Electronic energy + Delta-G solvation = -25133.394607 eV Core-core repulsion = 21691.251785 eV Total energy + Delta-G solvation = -3442.142822 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.65928 -40.08220 -38.49525 -36.56507 -34.51159 -32.72102 -32.04588 -31.58256 -29.29931 -27.88417 -26.99790 -26.64563 -24.41449 -23.74851 -21.96655 -20.68693 -20.15339 -19.45657 -18.79515 -18.45092 -17.93898 -17.05005 -16.85746 -16.41047 -15.97279 -15.57720 -15.52266 -15.01478 -14.95629 -14.19694 -13.95381 -13.87287 -13.84821 -13.57308 -13.40754 -13.33074 -13.22100 -13.06390 -12.95635 -12.76727 -12.69721 -12.56787 -12.27114 -11.97244 -11.81514 -11.72980 -11.50705 -11.43396 -11.15228 -10.94391 -10.77236 -9.70715 -9.63654 -9.27354 -8.91217 -7.74927 -5.22651 0.09209 0.77887 1.04688 1.46778 1.47420 1.57290 1.59038 1.65728 2.21482 2.48665 3.30034 3.44004 3.53835 3.80274 3.89385 3.91578 4.00104 4.07405 4.26020 4.32493 4.35606 4.43774 4.49419 4.57508 4.66305 4.72929 4.75801 4.77425 4.81670 4.90427 4.97620 5.08234 5.10956 5.20093 5.22591 5.35023 5.43453 5.46783 5.52506 5.55590 5.64371 5.84724 6.38331 6.58314 7.11905 7.15972 7.77365 8.45029 9.23277 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.015995 B = 0.003378 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.073264 B = 8287.267704 C = 9348.947842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.077 4.077 3 C 0.141 3.859 4 N -0.618 5.618 5 C -0.237 4.237 6 H 0.075 0.925 7 C -0.062 4.062 8 N -0.942 5.942 9 Si 0.978 3.022 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.294 1.294 13 C 0.149 3.851 14 C -0.107 4.107 15 H 0.104 0.896 16 C 0.114 3.886 17 N -0.615 5.615 18 C 0.529 3.471 19 O -0.582 6.582 20 C -0.072 4.072 21 C -0.099 4.099 22 C -0.145 4.145 23 C -0.217 4.217 24 S 0.111 5.889 25 C -0.206 4.206 26 C 0.123 3.877 27 H 0.081 0.919 28 H 0.047 0.953 29 H 0.065 0.935 30 H -0.005 1.005 31 H 0.042 0.958 32 H 0.248 0.752 33 H -0.020 1.020 34 H 0.093 0.907 35 H 0.105 0.895 36 H 0.082 0.918 37 H 0.133 0.867 38 H 0.107 0.893 39 H 0.133 0.867 40 H 0.182 0.818 41 H 0.180 0.820 42 H 0.055 0.945 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.024 -15.134 -9.383 17.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.079 4.079 3 C 0.015 3.985 4 N -0.341 5.341 5 C -0.365 4.365 6 H 0.093 0.907 7 C -0.254 4.254 8 N -0.592 5.592 9 Si 0.806 3.194 10 H -0.196 1.196 11 H -0.214 1.214 12 H -0.221 1.221 13 C 0.023 3.977 14 C -0.127 4.127 15 H 0.122 0.878 16 C -0.009 4.009 17 N -0.347 5.347 18 C 0.319 3.681 19 O -0.462 6.462 20 C -0.114 4.114 21 C -0.112 4.112 22 C -0.175 4.175 23 C -0.352 4.352 24 S 0.374 5.626 25 C -0.341 4.341 26 C 0.000 4.000 27 H 0.100 0.900 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.013 0.987 31 H 0.061 0.939 32 H 0.058 0.942 33 H -0.002 1.002 34 H 0.111 0.889 35 H 0.123 0.877 36 H 0.100 0.900 37 H 0.151 0.849 38 H 0.125 0.875 39 H 0.151 0.849 40 H 0.199 0.801 41 H 0.198 0.802 42 H 0.073 0.927 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.880 -15.795 -10.983 19.453 hybrid contribution -0.228 2.404 1.607 2.901 sum 2.652 -13.391 -9.376 16.560 Atomic orbital electron populations 1.21574 0.90749 1.02960 1.01952 1.22084 0.97263 0.94264 0.94276 1.21562 0.95052 0.95299 0.86542 1.44806 1.73471 1.04875 1.10983 1.19444 1.35218 0.86038 0.95847 0.90676 1.25523 1.01367 1.00805 0.97727 1.69845 1.49257 1.27289 1.12807 0.85020 0.76830 0.79226 0.78295 1.19644 1.21379 1.22101 1.21800 0.92023 0.82797 1.01061 1.23010 0.98104 0.95365 0.96265 0.87834 1.22327 1.00405 0.98160 0.79978 1.48587 1.16797 1.56123 1.13227 1.20695 0.82136 0.79261 0.85965 1.90668 1.80634 1.56386 1.18505 1.20369 0.90780 1.03037 0.97211 1.18503 0.97120 0.95162 1.00381 1.20239 0.95291 1.01076 1.00933 1.25823 1.05606 1.01183 1.02574 1.83957 1.19701 1.17938 1.40961 1.25667 1.03122 1.03806 1.01543 1.22025 0.87044 0.95213 0.95698 0.89964 0.93400 0.91559 0.98679 0.93932 0.94152 1.00226 0.88928 0.87721 0.89962 0.84889 0.87513 0.84906 0.80050 0.80233 0.92665 0.89097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.95 8.50 71.98 0.61 -2.34 16 2 C -0.08 -2.46 1.09 -51.02 -0.06 -2.51 16 3 C 0.14 5.99 6.37 86.51 0.55 6.54 16 4 N -0.62 -31.56 3.39 -695.33 -2.36 -33.92 16 5 C -0.24 -13.23 10.34 84.03 0.87 -12.36 16 6 H 0.08 4.11 7.83 -2.91 -0.02 4.08 16 7 C -0.06 -3.43 5.49 84.86 0.47 -2.96 16 8 N -0.94 -54.10 10.08 21.65 0.22 -53.88 16 9 Si 0.98 45.16 29.55 68.60 2.03 47.19 16 10 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 12 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 13 C 0.15 6.89 5.71 86.51 0.49 7.39 16 14 C -0.11 -3.53 3.70 -9.54 -0.04 -3.57 16 15 H 0.10 3.12 7.91 -2.39 -0.02 3.10 16 16 C 0.11 2.93 6.19 86.61 0.54 3.47 16 17 N -0.61 -18.22 3.32 -814.55 -2.70 -20.92 16 18 C 0.53 16.67 7.87 87.66 0.69 17.36 16 19 O -0.58 -22.83 16.27 -3.03 -0.05 -22.88 16 20 C -0.07 -1.73 4.93 29.10 0.14 -1.58 16 21 C -0.10 -2.51 4.29 -20.92 -0.09 -2.60 16 22 C -0.15 -3.79 9.98 21.22 0.21 -3.58 16 23 C -0.22 -4.82 11.23 66.72 0.75 -4.07 16 24 S 0.11 2.23 23.34 -56.49 -1.32 0.91 16 25 C -0.21 -4.55 10.98 66.72 0.73 -3.82 16 26 C 0.12 3.66 5.94 86.51 0.51 4.17 16 27 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 29 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.00 -0.21 7.39 -2.39 -0.02 -0.23 16 31 H 0.04 1.76 7.82 -2.39 -0.02 1.74 16 32 H 0.25 13.80 8.31 -92.71 -0.77 13.03 16 33 H -0.02 -1.01 7.42 -2.39 -0.02 -1.03 16 34 H 0.09 4.91 5.44 -2.38 -0.01 4.89 16 35 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.08 2.11 6.71 -2.39 -0.02 2.09 16 37 H 0.13 2.25 8.12 -2.39 -0.02 2.23 16 38 H 0.11 2.54 7.85 -2.39 -0.02 2.52 16 39 H 0.13 3.51 8.06 -2.91 -0.02 3.49 16 40 H 0.18 3.12 8.06 -2.91 -0.02 3.10 16 41 H 0.18 3.12 8.06 -2.91 -0.02 3.09 16 42 H 0.05 1.89 7.29 -2.38 -0.02 1.87 16 43 H 0.09 2.19 7.88 -2.39 -0.02 2.17 16 Total: -1.00 -71.22 356.58 3.21 -68.01 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: 1.00 Total: 15.96 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: 6.39 Total: -0.47 kcal Atomic # 7 Polarization: -103.89 SS G_CDS: -4.84 Total: -108.73 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: -0.05 Total: -22.88 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Atomic # 16 Polarization: 2.23 SS G_CDS: -1.32 Total: 0.91 kcal Total: -71.22 3.21 -68.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091453351.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.720 kcal (2) G-P(sol) polarization free energy of solvation -71.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds