Wall clock time and date at job start Tue Mar 31 2020 12:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.32756 * 34.63611 * 10 9 7 12 12 C 1.53027 * 109.32804 * 154.10661 * 10 9 7 13 13 C 1.53970 * 108.83637 * 175.67522 * 12 10 9 14 14 H 1.08999 * 113.67600 * 168.55968 * 13 12 10 15 15 C 1.55430 * 106.41236 * 293.83022 * 13 12 10 16 16 C 1.55168 * 100.35448 * 73.37015 * 15 13 12 17 17 H 1.09006 * 112.48370 * 163.35208 * 16 15 13 18 18 C 1.52986 * 109.32612 * 274.99753 * 10 9 7 19 19 N 1.47780 * 104.25683 * 40.54925 * 16 15 13 20 20 C 1.34775 * 125.85995 * 153.50485 * 19 16 15 21 21 O 1.21286 * 119.99712 * 0.02562 * 20 19 16 22 22 C 1.50699 * 120.00405 * 179.97438 * 20 19 16 23 23 C 1.50709 * 109.47055 * 179.97438 * 22 20 19 24 24 C 1.38423 * 122.54060 * 269.73954 * 23 22 20 25 25 C 1.33391 * 114.91976 * 179.76296 * 24 23 22 26 26 S 1.75883 * 109.59140 * 0.47451 * 25 24 23 27 27 C 1.33390 * 122.53714 * 90.02455 * 23 22 20 28 28 C 1.47086 * 108.29160 * 333.53992 * 19 16 15 29 29 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 30 30 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.58033 * 295.48468 * 12 10 9 32 32 H 1.09008 * 109.57753 * 55.87516 * 12 10 9 33 33 H 1.08999 * 111.23488 * 315.59133 * 15 13 12 34 34 H 1.08999 * 111.27410 * 191.16187 * 15 13 12 35 35 H 1.09000 * 109.53033 * 304.52612 * 18 10 9 36 36 H 1.08998 * 109.53616 * 64.67290 * 18 10 9 37 37 H 1.08993 * 109.47217 * 299.99861 * 22 20 19 38 38 H 1.08995 * 109.46745 * 60.00529 * 22 20 19 39 39 H 1.08000 * 122.53754 * 359.97438 * 24 23 22 40 40 H 1.07993 * 125.20002 * 180.21064 * 25 24 23 41 41 H 1.08004 * 125.20180 * 0.02562 * 27 23 22 42 42 H 1.09000 * 109.97667 * 241.74072 * 28 19 16 43 43 H 1.09002 * 110.01024 * 120.47154 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 2.9708 -3.5464 0.5837 12 6 1.1857 -4.7452 0.6278 13 6 1.9213 -6.0938 0.5238 14 1 1.4671 -6.8871 1.1175 15 6 2.0036 -6.4334 -0.9907 16 6 3.0864 -5.4193 -1.4455 17 1 3.5118 -5.6713 -2.4169 18 6 2.4211 -4.0317 -1.4397 19 7 4.0839 -5.4387 -0.3553 20 6 5.3935 -5.1448 -0.4781 21 8 5.8455 -4.8297 -1.5586 22 6 6.2960 -5.2067 0.7272 23 6 7.6999 -4.8366 0.3231 24 6 8.6246 -5.7753 -0.1010 25 6 9.8197 -5.2799 -0.4262 26 16 9.8214 -3.5377 -0.1850 27 6 8.1472 -3.5802 0.3522 28 6 3.4027 -5.8344 0.8868 29 1 -0.4850 -0.8401 -0.0004 30 1 0.3556 -2.3880 -0.0016 31 1 1.0050 -4.5077 1.6761 32 1 0.2360 -4.8052 0.0960 33 1 1.0528 -6.2461 -1.4896 34 1 2.3334 -7.4603 -1.1484 35 1 1.5175 -4.0582 -2.0486 36 1 3.1124 -3.2931 -1.8454 37 1 5.9394 -4.5085 1.4843 38 1 6.2901 -6.2180 1.1338 39 1 8.3948 -6.8285 -0.1670 40 1 10.6591 -5.8604 -0.7792 41 1 7.5697 -2.7207 0.6592 42 1 3.4712 -5.0318 1.6210 43 1 3.8530 -6.7434 1.2858 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094848971.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:43 Heat of formation + Delta-G solvation = 19.399814 kcal Electronic energy + Delta-G solvation = -25236.372625 eV Core-core repulsion = 21794.476531 eV Total energy + Delta-G solvation = -3441.896094 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.90911 -38.97254 -37.33827 -35.00913 -32.86401 -31.47325 -31.25339 -30.29754 -28.02138 -27.60380 -25.61420 -23.53041 -23.48796 -21.80169 -21.24659 -19.61350 -18.85310 -18.56832 -17.59205 -17.37042 -17.17261 -16.00346 -15.45819 -15.05201 -14.82840 -14.24532 -14.08942 -13.62650 -13.43995 -13.11222 -13.04313 -12.90286 -12.87216 -12.57944 -12.30576 -12.27796 -12.19053 -11.81347 -11.71086 -11.67489 -11.07679 -10.85562 -10.81330 -10.75255 -10.36911 -10.13543 -9.93442 -9.81531 -9.68034 -9.12781 -8.90071 -8.82014 -8.42999 -8.40936 -7.02773 -6.09386 -3.09035 0.98594 1.63348 1.94490 2.55858 2.81415 3.22489 3.52225 3.55987 3.72938 4.46339 4.51547 4.66750 4.71855 4.83223 4.91011 5.01201 5.14318 5.24923 5.29303 5.31545 5.39583 5.42592 5.51800 5.56342 5.60131 5.66842 5.74634 5.84104 5.88197 5.94986 5.96326 6.05608 6.15834 6.24452 6.33391 6.36309 6.39827 6.49279 6.61799 6.92195 7.01352 7.69847 7.82571 8.34894 8.76548 9.23689 10.09902 10.24604 11.39089 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.010496 B = 0.004398 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2666.969886 B = 6364.397815 C = 8510.378573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.044 4.044 3 Si 1.076 2.924 4 H -0.284 1.284 5 H -0.296 1.296 6 H -0.295 1.295 7 C -0.327 4.327 8 H 0.061 0.939 9 N -0.736 5.736 10 C 0.185 3.815 11 H 0.050 0.950 12 C -0.123 4.123 13 C -0.097 4.097 14 H 0.098 0.902 15 C -0.127 4.127 16 C 0.135 3.865 17 H 0.091 0.909 18 C -0.143 4.143 19 N -0.609 5.609 20 C 0.531 3.469 21 O -0.533 6.533 22 C -0.078 4.078 23 C -0.085 4.085 24 C -0.119 4.119 25 C -0.217 4.217 26 S 0.092 5.908 27 C -0.193 4.193 28 C 0.103 3.897 29 H 0.254 0.746 30 H 0.366 0.634 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.137 0.863 40 H 0.162 0.838 41 H 0.165 0.835 42 H 0.075 0.925 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.999 -17.144 3.240 21.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.241 4.241 3 Si 0.907 3.093 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.223 1.223 7 C -0.458 4.458 8 H 0.079 0.921 9 N -0.378 5.378 10 C 0.076 3.924 11 H 0.068 0.932 12 C -0.161 4.161 13 C -0.116 4.116 14 H 0.117 0.883 15 C -0.165 4.165 16 C 0.032 3.968 17 H 0.109 0.891 18 C -0.184 4.184 19 N -0.343 5.343 20 C 0.319 3.681 21 O -0.410 6.410 22 C -0.120 4.120 23 C -0.098 4.098 24 C -0.150 4.150 25 C -0.353 4.353 26 S 0.356 5.644 27 C -0.328 4.328 28 C -0.020 4.020 29 H 0.066 0.934 30 H 0.199 0.801 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.103 0.897 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.121 0.879 38 H 0.118 0.882 39 H 0.154 0.846 40 H 0.180 0.820 41 H 0.182 0.818 42 H 0.093 0.907 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 14.517 -14.068 2.477 20.366 hybrid contribution -1.187 -2.721 0.097 2.971 sum 13.330 -16.789 2.573 21.592 Atomic orbital electron populations 1.70890 1.06004 1.28344 1.53807 1.25713 0.97032 1.00869 1.00536 0.83292 0.74285 0.75797 0.75907 1.20979 1.22309 1.22272 1.20003 0.91845 0.85817 1.48135 0.92067 1.42444 1.04700 1.00819 1.89822 1.20171 0.94195 0.85435 0.92637 0.93249 1.22145 0.99076 0.93458 1.01432 1.22602 0.94228 0.98300 0.96504 0.88338 1.23045 0.99298 0.98385 0.95809 1.22284 0.87194 0.96472 0.90893 0.89103 1.22790 0.99975 0.94530 1.01120 1.48591 1.07216 1.67966 1.10576 1.20093 0.80767 0.76897 0.90350 1.90717 1.74269 1.47249 1.28723 1.20345 0.90556 1.04173 0.96940 1.18330 0.95564 0.92675 1.03200 1.19978 0.92573 1.00655 1.01752 1.25485 1.02270 0.97307 1.10207 1.84189 1.10005 1.05406 1.64815 1.25488 0.98334 1.00811 1.08204 1.22214 0.92879 0.99637 0.87307 0.93447 0.80132 0.91668 0.91801 0.89673 0.91349 0.91865 0.91887 0.87931 0.88190 0.84563 0.82040 0.81791 0.90709 0.91889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.32 13.70 55.49 0.76 -28.56 16 2 C -0.04 -1.29 5.50 -17.43 -0.10 -1.39 16 3 Si 1.08 26.48 29.92 -169.99 -5.09 21.40 16 4 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.30 -6.93 7.11 56.52 0.40 -6.52 16 6 H -0.30 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.33 -9.28 9.92 -15.06 -0.15 -9.43 16 8 H 0.06 1.76 7.83 -52.49 -0.41 1.35 16 9 N -0.74 -18.28 5.10 -53.43 -0.27 -18.56 16 10 C 0.19 3.60 2.39 -67.93 -0.16 3.44 16 11 H 0.05 1.02 5.88 -51.93 -0.31 0.72 16 12 C -0.12 -1.83 4.96 -26.21 -0.13 -1.96 16 13 C -0.10 -1.08 4.33 -87.92 -0.38 -1.46 16 14 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 15 C -0.13 -1.46 6.18 -24.29 -0.15 -1.61 16 16 C 0.13 2.01 3.97 -65.62 -0.26 1.75 16 17 H 0.09 1.41 8.04 -51.93 -0.42 1.00 16 18 C -0.14 -2.66 5.29 -26.28 -0.14 -2.80 16 19 N -0.61 -8.65 2.36 -161.81 -0.38 -9.03 16 20 C 0.53 8.24 7.85 -10.99 -0.09 8.15 16 21 O -0.53 -10.47 16.31 5.55 0.09 -10.38 16 22 C -0.08 -0.91 5.16 -29.03 -0.15 -1.06 16 23 C -0.09 -1.09 4.29 -106.24 -0.46 -1.54 16 24 C -0.12 -1.37 9.98 -41.21 -0.41 -1.78 16 25 C -0.22 -2.32 11.23 29.04 0.33 -2.00 16 26 S 0.09 1.05 23.34 -107.50 -2.51 -1.46 16 27 C -0.19 -2.52 10.98 29.04 0.32 -2.20 16 28 C 0.10 1.16 5.23 -2.82 -0.01 1.15 16 29 H 0.25 7.73 6.77 -40.82 -0.28 7.46 16 30 H 0.37 9.33 6.63 -40.82 -0.27 9.06 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.96 7.97 -51.92 -0.41 0.54 16 33 H 0.08 0.96 7.75 -51.93 -0.40 0.56 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 1.18 8.00 -51.93 -0.42 0.76 16 36 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 37 H 0.10 1.11 8.12 -51.93 -0.42 0.69 16 38 H 0.10 0.88 8.13 -51.93 -0.42 0.46 16 39 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 40 H 0.16 1.29 8.06 -52.49 -0.42 0.87 16 41 H 0.16 2.07 8.06 -52.48 -0.42 1.65 16 42 H 0.07 0.90 6.77 -51.93 -0.35 0.55 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 356.08 15.07 5.37 5.37 Total: -1.00 -34.66 356.08 -10.26 -44.92 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -6.29 Total: 9.05 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: -1.94 Total: -12.75 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: 0.11 Total: -56.15 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 14 Polarization: 26.48 SS G_CDS: -5.09 Total: 21.40 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -2.51 Total: -1.46 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.66 -10.26 -44.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094848971.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.322 kcal (2) G-P(sol) polarization free energy of solvation -34.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds