Wall clock time and date at job start Tue Mar 31 2020 12:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.32756 * 34.63611 * 10 9 7 12 12 C 1.53027 * 109.32804 * 154.10661 * 10 9 7 13 13 C 1.53970 * 108.83637 * 175.67522 * 12 10 9 14 14 H 1.08999 * 113.67600 * 168.55968 * 13 12 10 15 15 C 1.55430 * 106.41236 * 293.83022 * 13 12 10 16 16 C 1.55168 * 100.35448 * 73.37015 * 15 13 12 17 17 H 1.09006 * 112.48370 * 163.35208 * 16 15 13 18 18 C 1.52986 * 109.32612 * 274.99753 * 10 9 7 19 19 N 1.47780 * 104.25683 * 40.54925 * 16 15 13 20 20 C 1.34775 * 125.85995 * 153.50485 * 19 16 15 21 21 O 1.21286 * 119.99712 * 0.02562 * 20 19 16 22 22 C 1.50699 * 120.00405 * 179.97438 * 20 19 16 23 23 C 1.50709 * 109.47055 * 179.97438 * 22 20 19 24 24 C 1.38423 * 122.54060 * 269.73954 * 23 22 20 25 25 C 1.33391 * 114.91976 * 179.76296 * 24 23 22 26 26 S 1.75883 * 109.59140 * 0.47451 * 25 24 23 27 27 C 1.33390 * 122.53714 * 90.02455 * 23 22 20 28 28 C 1.47086 * 108.29160 * 333.53992 * 19 16 15 29 29 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 30 30 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.58033 * 295.48468 * 12 10 9 32 32 H 1.09008 * 109.57753 * 55.87516 * 12 10 9 33 33 H 1.08999 * 111.23488 * 315.59133 * 15 13 12 34 34 H 1.08999 * 111.27410 * 191.16187 * 15 13 12 35 35 H 1.09000 * 109.53033 * 304.52612 * 18 10 9 36 36 H 1.08998 * 109.53616 * 64.67290 * 18 10 9 37 37 H 1.08993 * 109.47217 * 299.99861 * 22 20 19 38 38 H 1.08995 * 109.46745 * 60.00529 * 22 20 19 39 39 H 1.08000 * 122.53754 * 359.97438 * 24 23 22 40 40 H 1.07993 * 125.20002 * 180.21064 * 25 24 23 41 41 H 1.08004 * 125.20180 * 0.02562 * 27 23 22 42 42 H 1.09000 * 109.97667 * 241.74072 * 28 19 16 43 43 H 1.09002 * 110.01024 * 120.47154 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 2.9708 -3.5464 0.5837 12 6 1.1857 -4.7452 0.6278 13 6 1.9213 -6.0938 0.5238 14 1 1.4671 -6.8871 1.1175 15 6 2.0036 -6.4334 -0.9907 16 6 3.0864 -5.4193 -1.4455 17 1 3.5118 -5.6713 -2.4169 18 6 2.4211 -4.0317 -1.4397 19 7 4.0839 -5.4387 -0.3553 20 6 5.3935 -5.1448 -0.4781 21 8 5.8455 -4.8297 -1.5586 22 6 6.2960 -5.2067 0.7272 23 6 7.6999 -4.8366 0.3231 24 6 8.6246 -5.7753 -0.1010 25 6 9.8197 -5.2799 -0.4262 26 16 9.8214 -3.5377 -0.1850 27 6 8.1472 -3.5802 0.3522 28 6 3.4027 -5.8344 0.8868 29 1 -0.4850 -0.8401 -0.0004 30 1 0.3556 -2.3880 -0.0016 31 1 1.0050 -4.5077 1.6761 32 1 0.2360 -4.8052 0.0960 33 1 1.0528 -6.2461 -1.4896 34 1 2.3334 -7.4603 -1.1484 35 1 1.5175 -4.0582 -2.0486 36 1 3.1124 -3.2931 -1.8454 37 1 5.9394 -4.5085 1.4843 38 1 6.2901 -6.2180 1.1338 39 1 8.3948 -6.8285 -0.1670 40 1 10.6591 -5.8604 -0.7792 41 1 7.5697 -2.7207 0.6592 42 1 3.4712 -5.0318 1.6210 43 1 3.8530 -6.7434 1.2858 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094848971.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:42 Heat of formation + Delta-G solvation = -2.061209 kcal Electronic energy + Delta-G solvation = -25237.303245 eV Core-core repulsion = 21794.476531 eV Total energy + Delta-G solvation = -3442.826714 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.08235 -40.07209 -38.41818 -36.84014 -34.37758 -32.87667 -32.51057 -31.44529 -29.43466 -28.83055 -26.75043 -25.59404 -24.48499 -22.91490 -22.65315 -20.72997 -20.09236 -19.56025 -19.42204 -18.48998 -18.33791 -17.25718 -16.78057 -16.35974 -16.02147 -15.73487 -15.67934 -15.34504 -14.55027 -14.46265 -14.06115 -13.98133 -13.92863 -13.73888 -13.56354 -13.46985 -13.20059 -13.00909 -12.88894 -12.75936 -12.70410 -12.63160 -12.19352 -11.96978 -11.74004 -11.68266 -11.55031 -11.37095 -10.99172 -10.94102 -10.84058 -9.72687 -9.62760 -9.32331 -9.13272 -8.43756 -5.36430 0.07460 0.74399 1.05920 1.50729 1.58514 1.59862 1.67310 1.76959 2.18549 2.64306 3.33446 3.46302 3.49259 3.59785 3.78840 3.97133 4.02818 4.04340 4.16657 4.23344 4.27934 4.32423 4.37050 4.47939 4.52671 4.57292 4.60511 4.69301 4.71025 4.80485 4.88086 5.00521 5.07153 5.08985 5.18023 5.27602 5.34785 5.43058 5.45600 5.47940 5.51526 5.54633 6.46894 6.58405 7.07421 7.17970 7.98034 8.07801 9.08574 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.010496 B = 0.004398 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2666.969886 B = 6364.397815 C = 8510.378573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.099 4.099 3 Si 1.119 2.881 4 H -0.286 1.286 5 H -0.276 1.276 6 H -0.287 1.287 7 C -0.326 4.326 8 H 0.050 0.950 9 N -0.749 5.749 10 C 0.183 3.817 11 H 0.035 0.965 12 C -0.116 4.116 13 C -0.080 4.080 14 H 0.145 0.855 15 C -0.114 4.114 16 C 0.133 3.867 17 H 0.080 0.920 18 C -0.133 4.133 19 N -0.609 5.609 20 C 0.522 3.478 21 O -0.586 6.586 22 C -0.070 4.070 23 C -0.092 4.092 24 C -0.134 4.134 25 C -0.211 4.211 26 S 0.091 5.909 27 C -0.226 4.226 28 C 0.095 3.905 29 H 0.246 0.754 30 H 0.360 0.640 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.057 0.943 36 H 0.009 0.991 37 H 0.109 0.891 38 H 0.139 0.861 39 H 0.159 0.841 40 H 0.191 0.809 41 H 0.156 0.844 42 H 0.066 0.934 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.661 -20.264 4.584 24.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.291 4.291 3 Si 0.945 3.055 4 H -0.212 1.212 5 H -0.202 1.202 6 H -0.214 1.214 7 C -0.458 4.458 8 H 0.068 0.932 9 N -0.391 5.391 10 C 0.075 3.925 11 H 0.053 0.947 12 C -0.154 4.154 13 C -0.099 4.099 14 H 0.163 0.837 15 C -0.152 4.152 16 C 0.029 3.971 17 H 0.098 0.902 18 C -0.175 4.175 19 N -0.343 5.343 20 C 0.312 3.688 21 O -0.467 6.467 22 C -0.112 4.112 23 C -0.105 4.105 24 C -0.164 4.164 25 C -0.346 4.346 26 S 0.355 5.645 27 C -0.362 4.362 28 C -0.027 4.027 29 H 0.056 0.944 30 H 0.192 0.808 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.119 0.881 35 H 0.075 0.925 36 H 0.028 0.972 37 H 0.127 0.873 38 H 0.157 0.843 39 H 0.176 0.824 40 H 0.208 0.792 41 H 0.173 0.827 42 H 0.084 0.916 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 15.185 -17.248 3.854 23.301 hybrid contribution -1.360 -1.765 -0.377 2.260 sum 13.824 -19.013 3.478 23.764 Atomic orbital electron populations 1.70988 1.06874 1.27950 1.56241 1.27011 0.97156 1.04186 1.00725 0.82733 0.73563 0.72350 0.76903 1.21179 1.20206 1.21427 1.20207 0.91530 0.87481 1.46555 0.93235 1.42655 1.04607 1.01878 1.89937 1.20403 0.94195 0.84960 0.92985 0.94664 1.22051 0.98525 0.94132 1.00685 1.22682 0.93532 0.96775 0.96896 0.83682 1.23024 0.97832 0.98620 0.95726 1.22214 0.88531 0.94923 0.91440 0.90206 1.22617 0.98739 0.96025 1.00082 1.48727 1.06890 1.67153 1.11493 1.20814 0.81438 0.75806 0.90737 1.90687 1.75382 1.49634 1.30952 1.20395 0.89080 1.06568 0.95166 1.18625 0.96305 0.92800 1.02818 1.20238 0.92523 1.01588 1.02010 1.25895 1.03011 0.96699 1.08984 1.84126 1.08980 1.06696 1.64699 1.25627 0.99544 1.01127 1.09853 1.22494 0.93162 1.01299 0.85708 0.94371 0.80771 0.91674 0.91712 0.89329 0.88123 0.92453 0.97225 0.87328 0.84336 0.82399 0.79228 0.82670 0.91592 0.87331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.80 13.70 21.65 0.30 -61.50 16 2 C -0.10 -5.94 5.50 84.86 0.47 -5.47 16 3 Si 1.12 54.37 29.92 68.60 2.05 56.42 16 4 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 7 C -0.33 -19.14 9.92 84.03 0.83 -18.30 16 8 H 0.05 2.97 7.83 -2.91 -0.02 2.94 16 9 N -0.75 -38.46 5.10 -322.94 -1.65 -40.11 16 10 C 0.18 7.19 2.39 45.00 0.11 7.30 16 11 H 0.04 1.49 5.88 -2.39 -0.01 1.48 16 12 C -0.12 -3.23 4.96 30.93 0.15 -3.08 16 13 C -0.08 -1.43 4.33 -9.04 -0.04 -1.47 16 14 H 0.15 1.48 8.14 -2.39 -0.02 1.46 16 15 C -0.11 -2.20 6.18 32.17 0.20 -2.00 16 16 C 0.13 3.88 3.97 45.79 0.18 4.06 16 17 H 0.08 2.51 8.04 -2.38 -0.02 2.49 16 18 C -0.13 -5.17 5.29 30.89 0.16 -5.01 16 19 N -0.61 -16.41 2.36 -784.23 -1.85 -18.26 16 20 C 0.52 15.94 7.85 87.66 0.69 16.62 16 21 O -0.59 -23.67 16.31 -3.05 -0.05 -23.72 16 22 C -0.07 -1.53 5.16 29.10 0.15 -1.38 16 23 C -0.09 -2.29 4.29 -20.92 -0.09 -2.38 16 24 C -0.13 -2.83 9.98 21.22 0.21 -2.62 16 25 C -0.21 -4.13 11.23 66.72 0.75 -3.39 16 26 S 0.09 2.06 23.34 -56.49 -1.32 0.74 16 27 C -0.23 -6.03 10.98 66.72 0.73 -5.30 16 28 C 0.09 1.79 5.23 86.85 0.45 2.25 16 29 H 0.25 15.43 6.77 -92.71 -0.63 14.80 16 30 H 0.36 19.01 6.63 -92.71 -0.61 18.40 16 31 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.06 1.82 7.97 -2.38 -0.02 1.80 16 33 H 0.09 1.71 7.75 -2.39 -0.02 1.69 16 34 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.06 2.23 8.00 -2.39 -0.02 2.21 16 36 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.11 2.23 8.12 -2.39 -0.02 2.21 16 38 H 0.14 1.89 8.13 -2.39 -0.02 1.87 16 39 H 0.16 2.57 8.06 -2.91 -0.02 2.54 16 40 H 0.19 2.50 8.06 -2.91 -0.02 2.48 16 41 H 0.16 4.21 8.06 -2.91 -0.02 4.19 16 42 H 0.07 1.41 6.77 -2.39 -0.02 1.40 16 43 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -80.49 356.08 2.99 -77.50 By element: Atomic # 1 Polarization: 28.54 SS G_CDS: 0.54 Total: 29.09 kcal Atomic # 6 Polarization: -25.13 SS G_CDS: 4.96 Total: -20.16 kcal Atomic # 7 Polarization: -116.67 SS G_CDS: -3.20 Total: -119.87 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.05 Total: -23.72 kcal Atomic # 14 Polarization: 54.37 SS G_CDS: 2.05 Total: 56.42 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -1.32 Total: 0.74 kcal Total: -80.49 2.99 -77.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094848971.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.439 kcal (2) G-P(sol) polarization free energy of solvation -80.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds