Wall clock time and date at job start Tue Mar 31 2020 12:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86796 * 120.00137 * 2 1 4 4 H 1.48502 * 109.47410 * 240.00433 * 3 2 1 5 5 H 1.48505 * 109.47121 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47255 * 120.00269 * 3 2 1 7 7 C 1.39936 * 119.99946 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99805 * 196.58608 * 7 2 1 9 9 C 1.41408 * 120.00074 * 16.58183 * 7 2 1 10 10 C 1.40787 * 120.20587 * 25.23235 * 9 7 2 11 11 C 1.37646 * 119.89187 * 180.02562 * 10 9 7 12 12 C 1.38519 * 120.32246 * 359.73353 * 11 10 9 13 13 C 1.39292 * 120.42722 * 0.52298 * 12 11 10 14 14 N 1.39686 * 119.95553 * 179.75749 * 13 12 11 15 15 C 1.46504 * 119.99896 * 359.44819 * 14 13 12 16 16 C 1.50698 * 109.47527 * 180.27182 * 15 14 13 17 17 C 1.35368 * 126.96846 * 94.17107 * 16 15 14 18 18 N 1.33779 * 106.53550 * 179.88772 * 17 16 15 19 19 N 1.28611 * 109.05874 * 0.39024 * 18 17 16 20 20 N 1.28728 * 110.23126 * 359.75554 * 19 18 17 21 21 C 1.40250 * 125.93743 * 180.02562 * 20 19 18 22 22 C 1.38829 * 120.06376 * 41.16324 * 21 20 19 23 23 C 1.38122 * 119.92728 * 179.69638 * 22 21 20 24 24 C 1.38271 * 120.07321 * 0.57744 * 23 22 21 25 25 C 1.38282 * 120.12595 * 359.71846 * 24 23 22 26 26 C 1.38120 * 120.06439 * 359.97438 * 25 24 23 27 27 C 1.38320 * 120.09487 * 359.48232 * 13 12 11 28 28 H 0.97001 * 120.00025 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.05264 * 359.97438 * 10 9 7 30 30 H 1.07992 * 119.83499 * 180.02562 * 11 10 9 31 31 H 1.08004 * 119.78543 * 180.28127 * 12 11 10 32 32 H 0.97000 * 120.00415 * 179.72632 * 14 13 12 33 33 H 1.08995 * 109.47231 * 300.27840 * 15 14 13 34 34 H 1.09011 * 109.46680 * 60.27150 * 15 14 13 35 35 H 1.07997 * 126.73540 * 359.97438 * 17 16 15 36 36 H 1.07993 * 120.03353 * 359.97438 * 22 21 20 37 37 H 1.08009 * 119.96475 * 180.31767 * 23 22 21 38 38 H 1.07998 * 119.94227 * 179.74876 * 24 23 22 39 39 H 1.08005 * 119.96608 * 179.97438 * 25 24 23 40 40 H 1.08004 * 120.03486 * 180.02562 * 26 25 24 41 41 H 1.08002 * 120.15747 * 180.23328 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2773 2.7465 -0.0006 6 1 3.0961 1.6963 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0543 -1.2314 0.2665 9 6 1.3450 -2.4109 -0.3506 10 6 0.2078 -2.3754 -1.1798 11 6 -0.4328 -3.5464 -1.5160 12 6 0.0391 -4.7613 -1.0469 13 6 1.1599 -4.8115 -0.2214 14 7 1.6244 -6.0416 0.2501 15 6 0.9256 -7.2768 -0.1138 16 6 1.6187 -8.4529 0.5244 17 6 1.3102 -9.0365 1.7062 18 7 2.1801 -10.0388 1.8744 19 7 2.9820 -10.0720 0.8695 20 7 2.6856 -9.1401 0.0324 21 6 3.3466 -8.8787 -1.1766 22 6 3.7496 -9.9290 -1.9901 23 6 4.3948 -9.6682 -3.1832 24 6 4.6502 -8.3632 -3.5619 25 6 4.2555 -7.3152 -2.7507 26 6 3.6042 -7.5695 -1.5595 27 6 1.8171 -3.6455 0.1275 28 1 -0.4850 0.8400 -0.0004 29 1 -0.1618 -1.4309 -1.5508 30 1 -1.3048 -3.5182 -2.1524 31 1 -0.4676 -5.6752 -1.3198 32 1 2.4072 -6.0778 0.8218 33 1 -0.1051 -7.2281 0.2374 34 1 0.9350 -7.3937 -1.1976 35 1 0.5166 -8.7501 2.3804 36 1 3.5547 -10.9487 -1.6926 37 1 4.7040 -10.4848 -3.8190 38 1 5.1585 -8.1618 -4.4933 39 1 4.4567 -6.2968 -3.0489 40 1 3.2958 -6.7506 -0.9265 41 1 2.6885 -3.6836 0.7645 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178736640.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:59 Heat of formation + Delta-G solvation = 157.853158 kcal Electronic energy + Delta-G solvation = -25330.624537 eV Core-core repulsion = 21791.581030 eV Total energy + Delta-G solvation = -3539.043507 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.133 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.57783 -39.48125 -38.01163 -35.59972 -34.67407 -33.39973 -31.63084 -31.19282 -30.08526 -29.83809 -28.14211 -25.51061 -25.17023 -24.14076 -23.43895 -21.94274 -21.16399 -20.70816 -20.11930 -18.40293 -17.50320 -16.69179 -16.60220 -15.82293 -15.50007 -15.31178 -14.83318 -14.70031 -14.33233 -14.26715 -13.93474 -13.68374 -13.49444 -13.17224 -12.89601 -12.67208 -12.19802 -12.02996 -11.83815 -11.61714 -11.50715 -11.33025 -11.15036 -11.03482 -10.77312 -10.68297 -10.49264 -9.95413 -9.43755 -9.36099 -9.34526 -9.29843 -8.99473 -8.87737 -7.47066 -6.76982 -6.39084 -4.38778 0.49618 1.01141 1.57473 2.10114 2.40020 2.80950 3.05730 3.08274 3.13341 3.27754 3.35551 3.91529 4.04204 4.23741 4.44517 4.57002 4.63785 4.66341 4.80050 4.92212 5.02072 5.03135 5.26132 5.41314 5.58240 5.66926 5.69996 5.80285 5.93822 5.98815 6.09032 6.17478 6.21408 6.34909 6.42221 6.72448 6.86552 6.94360 7.04977 7.22413 7.26942 7.63512 7.80317 8.05317 8.14291 8.30874 8.39429 8.39911 8.69240 8.92071 9.01744 10.19137 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.015862 B = 0.003128 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.840372 B = 8950.077529 C = 9763.129047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.078 3.922 3 Si 0.907 3.093 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.464 4.464 8 H 0.075 0.925 9 C 0.142 3.858 10 C -0.194 4.194 11 C -0.075 4.075 12 C -0.299 4.299 13 C 0.221 3.779 14 N -0.760 5.760 15 C 0.208 3.792 16 C -0.023 4.023 17 C -0.029 4.029 18 N -0.267 5.267 19 N -0.078 5.078 20 N -0.236 5.236 21 C 0.107 3.893 22 C -0.096 4.096 23 C -0.111 4.111 24 C -0.104 4.104 25 C -0.099 4.099 26 C -0.102 4.102 27 C -0.285 4.285 28 H 0.280 0.720 29 H 0.115 0.885 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.389 0.611 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.196 0.804 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.140 0.860 40 H 0.151 0.849 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.796 -13.488 -5.783 15.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.494 4.494 8 H 0.093 0.907 9 C 0.139 3.861 10 C -0.214 4.214 11 C -0.094 4.094 12 C -0.322 4.322 13 C 0.124 3.876 14 N -0.396 5.396 15 C 0.081 3.919 16 C -0.153 4.153 17 C -0.186 4.186 18 N -0.133 5.133 19 N -0.056 5.056 20 N -0.025 5.025 21 C 0.017 3.983 22 C -0.116 4.116 23 C -0.130 4.130 24 C -0.122 4.122 25 C -0.118 4.118 26 C -0.122 4.122 27 C -0.309 4.309 28 H 0.091 0.909 29 H 0.133 0.867 30 H 0.104 0.896 31 H 0.103 0.897 32 H 0.223 0.777 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.213 0.787 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.150 0.850 39 H 0.158 0.842 40 H 0.169 0.831 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.354 -14.642 -5.483 16.526 hybrid contribution -0.152 1.606 0.102 1.616 sum 5.202 -13.037 -5.381 15.032 Atomic orbital electron populations 1.69834 1.07526 1.29192 1.35113 1.25888 0.94708 1.01192 0.92236 0.86398 0.80164 0.80384 0.79935 1.18855 1.20358 1.19067 1.19532 0.97600 0.91146 1.41126 0.90656 1.17322 0.90404 0.91229 0.87147 1.21217 1.00194 0.96700 1.03304 1.20439 0.97678 0.92850 0.98436 1.19840 1.02867 0.96664 1.12839 1.17392 0.93394 0.83408 0.93413 1.44530 1.33774 1.02589 1.58721 1.19459 0.95049 0.79131 0.98218 1.22665 0.93627 1.01107 0.97858 1.23476 1.02671 0.95768 0.96668 1.75099 1.03849 1.18466 1.15866 1.78393 1.20581 1.09743 0.96906 1.44663 1.20757 1.21786 1.15304 1.17607 1.01247 0.94976 0.84433 1.21013 0.98406 0.98361 0.93796 1.21064 0.98760 0.97380 0.95766 1.21419 0.98475 0.92544 0.99803 1.21191 0.96991 1.00335 0.93269 1.21644 0.97162 0.95060 0.98384 1.20392 1.06405 0.91528 1.12561 0.90890 0.86684 0.89552 0.89664 0.77693 0.89730 0.91480 0.78709 0.84845 0.84769 0.84983 0.84244 0.83122 0.89296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.14 10.93 55.55 0.61 -19.53 16 2 C 0.08 1.92 5.16 -17.34 -0.09 1.83 16 3 Si 0.91 18.33 29.59 -169.99 -5.03 13.30 16 4 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 5 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 6 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 7 C -0.46 -12.04 9.05 -37.74 -0.34 -12.38 16 8 H 0.08 1.88 7.90 -52.48 -0.41 1.47 16 9 C 0.14 3.66 5.57 -106.85 -0.59 3.07 16 10 C -0.19 -4.89 8.69 -38.83 -0.34 -5.23 16 11 C -0.07 -1.69 10.02 -39.69 -0.40 -2.09 16 12 C -0.30 -6.23 9.32 -39.09 -0.36 -6.59 16 13 C 0.22 4.50 6.64 -83.86 -0.56 3.95 16 14 N -0.76 -12.17 3.94 -59.86 -0.24 -12.41 16 15 C 0.21 2.84 4.33 -5.19 -0.02 2.82 16 16 C -0.02 -0.31 6.19 -81.72 -0.51 -0.81 16 17 C -0.03 -0.38 11.99 -17.73 -0.21 -0.59 16 18 N -0.27 -4.10 12.40 30.24 0.37 -3.72 16 19 N -0.08 -1.20 12.94 60.35 0.78 -0.42 16 20 N -0.24 -3.29 3.47 -6.78 -0.02 -3.32 16 21 C 0.11 1.36 6.14 -83.57 -0.51 0.84 16 22 C -0.10 -1.01 9.78 -39.41 -0.39 -1.40 16 23 C -0.11 -0.94 10.04 -39.61 -0.40 -1.34 16 24 C -0.10 -0.89 10.04 -39.55 -0.40 -1.29 16 25 C -0.10 -1.04 10.04 -39.61 -0.40 -1.44 16 26 C -0.10 -1.27 8.60 -39.41 -0.34 -1.61 16 27 C -0.29 -6.62 9.63 -38.68 -0.37 -6.99 16 28 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 29 H 0.12 3.02 6.16 -52.49 -0.32 2.70 16 30 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 31 H 0.09 1.57 6.70 -52.48 -0.35 1.22 16 32 H 0.39 6.04 8.07 -40.82 -0.33 5.72 16 33 H 0.08 1.10 7.95 -51.93 -0.41 0.69 16 34 H 0.07 0.93 7.36 -51.92 -0.38 0.55 16 35 H 0.20 2.00 8.06 -52.49 -0.42 1.58 16 36 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 38 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 39 H 0.14 1.33 8.06 -52.48 -0.42 0.91 16 40 H 0.15 2.09 5.08 -52.48 -0.27 1.82 16 41 H 0.09 1.99 8.06 -52.49 -0.42 1.56 16 LS Contribution 349.72 15.07 5.27 5.27 Total: -1.00 -28.64 349.72 -9.06 -37.70 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -4.57 Total: 12.40 kcal Atomic # 6 Polarization: -23.04 SS G_CDS: -6.23 Total: -29.26 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: 1.50 Total: -39.40 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.03 Total: 13.30 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.64 -9.06 -37.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178736640.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.548 kcal (2) G-P(sol) polarization free energy of solvation -28.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 166.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds