Wall clock time and date at job start Tue Mar 31 2020 12:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00307 * 2 1 4 4 H 1.48504 * 109.46898 * 270.00295 * 3 2 1 5 5 H 1.48493 * 109.47023 * 29.99971 * 3 2 1 6 6 H 1.48498 * 109.46935 * 150.00093 * 3 2 1 7 7 C 1.37879 * 119.99460 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99512 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00571 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47456 * 179.97438 * 9 7 2 11 11 N 1.46493 * 109.47005 * 179.97438 * 10 9 7 12 12 C 1.33328 * 117.36259 * 269.73952 * 11 10 9 13 13 O 1.21286 * 118.67961 * 0.29210 * 12 11 10 14 14 C 1.50329 * 122.62988 * 182.13713 * 12 11 10 15 15 C 1.52922 * 109.20690 * 337.83689 * 14 12 11 16 16 C 1.53106 * 109.19077 * 52.70927 * 15 14 12 17 17 H 1.08998 * 112.34096 * 60.02907 * 16 15 14 18 18 C 1.44804 * 117.36348 * 90.00255 * 11 10 9 19 19 H 1.08996 * 110.01246 * 44.43498 * 18 11 10 20 20 C 1.54361 * 110.63761 * 282.63713 * 18 11 10 21 21 C 1.54255 * 104.83047 * 217.40428 * 20 18 11 22 22 N 1.48056 * 106.83562 * 358.54852 * 21 20 18 23 23 C 1.40784 * 110.99861 * 146.60626 * 22 21 20 24 24 C 1.38774 * 122.60699 * 146.18645 * 23 22 21 25 25 C 1.33413 * 114.87993 * 179.76299 * 24 23 22 26 26 S 1.75860 * 109.69228 * 0.47967 * 25 24 23 27 27 C 1.33746 * 122.61480 * 326.47923 * 23 22 21 28 28 H 0.96995 * 119.99652 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.46824 * 59.99629 * 9 7 2 30 30 H 1.09001 * 109.46649 * 299.99742 * 9 7 2 31 31 H 1.08994 * 109.46846 * 300.00488 * 10 9 7 32 32 H 1.09006 * 109.46364 * 59.99955 * 10 9 7 33 33 H 1.09000 * 109.11222 * 218.20697 * 14 12 11 34 34 H 1.09000 * 110.06208 * 98.04524 * 14 12 11 35 35 H 1.09001 * 109.52354 * 292.79124 * 15 14 12 36 36 H 1.09007 * 109.56369 * 172.65156 * 15 14 12 37 37 H 1.08998 * 110.36566 * 336.24193 * 20 18 11 38 38 H 1.09006 * 110.36693 * 98.45506 * 20 18 11 39 39 H 1.09006 * 109.98783 * 117.89038 * 21 20 18 40 40 H 1.09000 * 109.98943 * 239.16082 * 21 20 18 41 41 H 1.08003 * 122.55980 * 359.97438 * 24 23 22 42 42 H 1.08005 * 125.15624 * 180.24810 * 25 24 23 43 43 H 1.07991 * 125.19243 * 0.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4993 0.0005 10 6 2.2451 -3.6622 0.0005 11 7 1.5126 -4.9309 0.0012 12 6 1.2112 -5.4639 1.1855 13 8 1.5496 -4.8765 2.1912 14 6 0.5045 -6.7834 1.3243 15 6 -0.2561 -7.0851 0.0324 16 6 0.7035 -6.9701 -1.1551 17 1 1.5384 -7.6669 -1.0821 18 6 1.1794 -5.5076 -1.2846 19 1 2.0391 -5.4524 -1.9523 20 6 -0.0262 -4.7765 -1.9129 21 6 -0.8414 -5.8855 -2.6093 22 7 -0.1029 -7.1525 -2.4059 23 6 -0.9895 -8.2396 -2.2870 24 6 -0.6832 -9.5092 -2.7563 25 6 -1.6329 -10.4250 -2.5584 26 16 -3.0099 -9.6861 -1.7518 27 6 -2.1948 -8.1280 -1.7180 28 1 -0.4849 0.8400 -0.0004 29 1 0.6246 -2.5571 -0.8896 30 1 0.6240 -2.5568 0.8903 31 1 2.8718 -3.6044 -0.8894 32 1 2.8718 -3.6044 0.8906 33 1 -0.1987 -6.7260 2.1551 34 1 1.2276 -7.5767 1.5141 35 1 -1.0701 -6.3701 -0.0865 36 1 -0.6625 -8.0957 0.0757 37 1 -0.6239 -4.2957 -1.1385 38 1 0.3142 -4.0397 -2.6406 39 1 -1.8328 -5.9561 -2.1616 40 1 -0.9283 -5.6710 -3.6745 41 1 0.2540 -9.7391 -3.2414 42 1 -1.5677 -11.4621 -2.8527 43 1 -2.6049 -7.2198 -1.3019 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274830281.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:35 Heat of formation + Delta-G solvation = 21.022268 kcal Electronic energy + Delta-G solvation = -25514.006551 eV Core-core repulsion = 22072.180812 eV Total energy + Delta-G solvation = -3441.825739 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.30307 -39.23467 -36.99659 -34.96739 -33.56617 -32.75621 -30.92061 -29.31513 -28.90255 -27.74576 -25.13283 -24.42856 -23.24593 -22.00377 -21.20366 -20.71799 -18.86711 -18.07653 -17.87875 -16.54893 -16.48876 -16.34718 -15.82257 -15.19286 -14.78951 -14.50891 -14.41630 -14.08681 -13.62929 -13.27135 -13.14960 -12.87097 -12.64792 -12.51524 -12.47579 -12.31315 -11.84809 -11.80767 -11.73045 -11.41826 -11.30026 -11.11001 -10.92767 -10.85549 -10.67793 -10.51486 -9.83152 -9.81388 -9.35280 -9.19067 -9.01809 -8.86155 -8.33416 -8.23954 -8.06452 -5.99943 -4.02013 0.74579 1.42587 1.76982 2.41167 3.07487 3.32504 3.34937 3.39448 3.43801 3.79590 4.36538 4.47621 4.59983 4.69514 4.76249 4.82326 5.01549 5.12666 5.15825 5.25521 5.28207 5.31207 5.36806 5.42716 5.64530 5.72073 5.75484 5.78840 5.83421 5.94832 6.00324 6.08415 6.18099 6.24258 6.29108 6.55035 6.60616 6.84392 6.92455 7.05603 7.65401 7.75668 8.00939 8.06073 8.38847 8.67204 9.04424 9.61465 11.11520 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.022889 B = 0.003248 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.982306 B = 8617.383709 C = 9085.238298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.014 3.986 10 C 0.108 3.892 11 N -0.591 5.591 12 C 0.510 3.490 13 O -0.546 6.546 14 C -0.131 4.131 15 C -0.147 4.147 16 C 0.069 3.931 17 H 0.110 0.890 18 C 0.151 3.849 19 H 0.094 0.906 20 C -0.142 4.142 21 C 0.037 3.963 22 N -0.463 5.463 23 C 0.081 3.919 24 C -0.114 4.114 25 C -0.211 4.211 26 S 0.102 5.898 27 C -0.252 4.252 28 H 0.260 0.740 29 H 0.021 0.979 30 H 0.019 0.981 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.054 0.946 40 H 0.086 0.914 41 H 0.145 0.855 42 H 0.165 0.835 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.516 -22.419 -6.832 23.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.024 4.024 10 C -0.013 4.013 11 N -0.322 5.322 12 C 0.298 3.702 13 O -0.424 6.424 14 C -0.171 4.171 15 C -0.186 4.186 16 C -0.037 4.037 17 H 0.128 0.872 18 C 0.045 3.955 19 H 0.112 0.888 20 C -0.181 4.181 21 C -0.090 4.090 22 N -0.184 5.184 23 C -0.026 4.026 24 C -0.146 4.146 25 C -0.347 4.347 26 S 0.363 5.637 27 C -0.390 4.390 28 H 0.069 0.931 29 H 0.039 0.961 30 H 0.038 0.962 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.072 0.928 40 H 0.105 0.895 41 H 0.163 0.837 42 H 0.183 0.817 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -5.552 -22.642 -6.266 24.141 hybrid contribution 1.051 1.692 0.004 1.991 sum -4.502 -20.951 -6.262 22.325 Atomic orbital electron populations 1.69967 1.06054 1.26555 1.50759 1.24980 0.94835 0.99201 0.95244 0.86579 0.79919 0.83415 0.78014 1.20685 1.21254 1.19820 1.21113 0.93020 0.90810 1.50789 0.92629 1.19414 0.94394 0.90915 0.97682 1.21963 0.95755 0.82046 1.01547 1.47194 1.56169 1.24454 1.04337 1.19965 0.79961 0.87102 0.83208 1.90739 1.53346 1.62755 1.35558 1.21587 1.00606 0.95776 0.99161 1.22313 0.98954 1.02986 0.94358 1.23264 0.96100 0.96884 0.87481 0.87233 1.21374 0.98225 0.90702 0.85229 0.88794 1.22990 0.96721 0.97446 1.00993 1.23119 0.96243 0.87755 1.01885 1.62781 1.20819 1.01826 1.32933 1.18009 0.92001 0.93196 0.99364 1.19881 1.01058 0.91314 1.02297 1.25535 0.97709 1.03667 1.07801 1.84265 1.19482 1.01392 1.58562 1.26089 1.00985 1.02286 1.09597 0.93054 0.96062 0.96240 0.91951 0.90640 0.88512 0.88619 0.90921 0.90225 0.89716 0.89506 0.92764 0.89547 0.83694 0.81734 0.81645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.95 13.29 55.43 0.74 -26.21 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 16 8 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 9 C 0.01 0.36 5.00 -27.88 -0.14 0.22 16 10 C 0.11 2.28 5.07 -4.05 -0.02 2.26 16 11 N -0.59 -10.35 2.45 -166.30 -0.41 -10.76 16 12 C 0.51 9.29 7.46 -11.81 -0.09 9.20 16 13 O -0.55 -12.57 16.19 5.55 0.09 -12.48 16 14 C -0.13 -1.70 6.08 -28.10 -0.17 -1.87 16 15 C -0.15 -1.67 3.70 -26.72 -0.10 -1.77 16 16 C 0.07 0.79 3.55 -65.26 -0.23 0.56 16 17 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 18 C 0.15 2.10 3.14 -67.42 -0.21 1.88 16 19 H 0.09 1.25 7.98 -51.93 -0.41 0.83 16 20 C -0.14 -2.03 4.60 -25.36 -0.12 -2.15 16 21 C 0.04 0.43 5.86 -2.53 -0.01 0.42 16 22 N -0.46 -5.11 5.34 -159.90 -0.85 -5.96 16 23 C 0.08 0.82 4.11 -85.12 -0.35 0.47 16 24 C -0.11 -1.02 10.16 -41.07 -0.42 -1.44 16 25 C -0.21 -1.63 11.22 29.05 0.33 -1.30 16 26 S 0.10 0.83 23.33 -107.50 -2.51 -1.67 16 27 C -0.25 -2.44 7.68 29.16 0.22 -2.21 16 28 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.02 0.55 6.29 -51.93 -0.33 0.23 16 30 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 1.21 7.88 -51.93 -0.41 0.80 16 32 H 0.08 1.74 7.13 -51.93 -0.37 1.37 16 33 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.07 0.90 5.90 -51.93 -0.31 0.60 16 36 H 0.08 0.81 6.31 -51.93 -0.33 0.49 16 37 H 0.08 1.43 7.48 -51.93 -0.39 1.05 16 38 H 0.09 1.29 8.08 -51.93 -0.42 0.87 16 39 H 0.05 0.61 5.19 -51.93 -0.27 0.34 16 40 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.15 1.16 8.06 -52.48 -0.42 0.73 16 42 H 0.17 0.88 8.06 -52.48 -0.42 0.46 16 43 H 0.17 1.60 5.77 -52.49 -0.30 1.30 16 LS Contribution 344.56 15.07 5.19 5.19 Total: -1.00 -32.69 344.56 -10.53 -43.22 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -6.04 Total: 1.00 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: -1.72 Total: -9.17 kcal Atomic # 7 Polarization: -42.41 SS G_CDS: -0.53 Total: -42.93 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.09 Total: -12.48 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: 0.83 SS G_CDS: -2.51 Total: -1.67 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.69 -10.53 -43.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274830281.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.245 kcal (2) G-P(sol) polarization free energy of solvation -32.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds