Wall clock time and date at job start Tue Mar 31 2020 12:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00307 * 2 1 4 4 H 1.48504 * 109.46898 * 270.00295 * 3 2 1 5 5 H 1.48493 * 109.47023 * 29.99971 * 3 2 1 6 6 H 1.48498 * 109.46935 * 150.00093 * 3 2 1 7 7 C 1.37879 * 119.99460 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99512 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00571 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47456 * 179.97438 * 9 7 2 11 11 N 1.46493 * 109.47005 * 179.97438 * 10 9 7 12 12 C 1.33328 * 117.36259 * 269.73952 * 11 10 9 13 13 O 1.21286 * 118.67961 * 0.29210 * 12 11 10 14 14 C 1.50329 * 122.62988 * 182.13713 * 12 11 10 15 15 C 1.52922 * 109.20690 * 337.83689 * 14 12 11 16 16 C 1.53106 * 109.19077 * 52.70927 * 15 14 12 17 17 H 1.08998 * 112.34096 * 60.02907 * 16 15 14 18 18 C 1.44804 * 117.36348 * 90.00255 * 11 10 9 19 19 H 1.08996 * 110.01246 * 44.43498 * 18 11 10 20 20 C 1.54361 * 110.63761 * 282.63713 * 18 11 10 21 21 C 1.54255 * 104.83047 * 217.40428 * 20 18 11 22 22 N 1.48056 * 106.83562 * 358.54852 * 21 20 18 23 23 C 1.40784 * 110.99861 * 146.60626 * 22 21 20 24 24 C 1.38774 * 122.60699 * 146.18645 * 23 22 21 25 25 C 1.33413 * 114.87993 * 179.76299 * 24 23 22 26 26 S 1.75860 * 109.69228 * 0.47967 * 25 24 23 27 27 C 1.33746 * 122.61480 * 326.47923 * 23 22 21 28 28 H 0.96995 * 119.99652 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.46824 * 59.99629 * 9 7 2 30 30 H 1.09001 * 109.46649 * 299.99742 * 9 7 2 31 31 H 1.08994 * 109.46846 * 300.00488 * 10 9 7 32 32 H 1.09006 * 109.46364 * 59.99955 * 10 9 7 33 33 H 1.09000 * 109.11222 * 218.20697 * 14 12 11 34 34 H 1.09000 * 110.06208 * 98.04524 * 14 12 11 35 35 H 1.09001 * 109.52354 * 292.79124 * 15 14 12 36 36 H 1.09007 * 109.56369 * 172.65156 * 15 14 12 37 37 H 1.08998 * 110.36566 * 336.24193 * 20 18 11 38 38 H 1.09006 * 110.36693 * 98.45506 * 20 18 11 39 39 H 1.09006 * 109.98783 * 117.89038 * 21 20 18 40 40 H 1.09000 * 109.98943 * 239.16082 * 21 20 18 41 41 H 1.08003 * 122.55980 * 359.97438 * 24 23 22 42 42 H 1.08005 * 125.15624 * 180.24810 * 25 24 23 43 43 H 1.07991 * 125.19243 * 0.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4993 0.0005 10 6 2.2451 -3.6622 0.0005 11 7 1.5126 -4.9309 0.0012 12 6 1.2112 -5.4639 1.1855 13 8 1.5496 -4.8765 2.1912 14 6 0.5045 -6.7834 1.3243 15 6 -0.2561 -7.0851 0.0324 16 6 0.7035 -6.9701 -1.1551 17 1 1.5384 -7.6669 -1.0821 18 6 1.1794 -5.5076 -1.2846 19 1 2.0391 -5.4524 -1.9523 20 6 -0.0262 -4.7765 -1.9129 21 6 -0.8414 -5.8855 -2.6093 22 7 -0.1029 -7.1525 -2.4059 23 6 -0.9895 -8.2396 -2.2870 24 6 -0.6832 -9.5092 -2.7563 25 6 -1.6329 -10.4250 -2.5584 26 16 -3.0099 -9.6861 -1.7518 27 6 -2.1948 -8.1280 -1.7180 28 1 -0.4849 0.8400 -0.0004 29 1 0.6246 -2.5571 -0.8896 30 1 0.6240 -2.5568 0.8903 31 1 2.8718 -3.6044 -0.8894 32 1 2.8718 -3.6044 0.8906 33 1 -0.1987 -6.7260 2.1551 34 1 1.2276 -7.5767 1.5141 35 1 -1.0701 -6.3701 -0.0865 36 1 -0.6625 -8.0957 0.0757 37 1 -0.6239 -4.2957 -1.1385 38 1 0.3142 -4.0397 -2.6406 39 1 -1.8328 -5.9561 -2.1616 40 1 -0.9283 -5.6710 -3.6745 41 1 0.2540 -9.7391 -3.2414 42 1 -1.5677 -11.4621 -2.8527 43 1 -2.6049 -7.2198 -1.3019 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274830281.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:34 Heat of formation + Delta-G solvation = 0.379081 kcal Electronic energy + Delta-G solvation = -25514.901707 eV Core-core repulsion = 22072.180812 eV Total energy + Delta-G solvation = -3442.720895 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.41699 -40.44746 -38.05990 -36.46574 -35.08814 -34.37645 -32.15722 -31.01251 -29.80430 -28.75028 -26.95268 -25.50280 -24.27486 -23.56800 -22.36776 -22.07915 -19.61719 -19.25674 -18.75882 -18.50176 -17.71265 -17.49557 -17.16061 -16.61808 -16.29503 -15.87945 -15.65356 -14.92582 -14.84129 -14.60526 -14.47965 -14.22933 -13.93735 -13.63872 -13.56318 -13.38255 -13.22475 -13.07957 -12.89469 -12.81944 -12.72291 -12.57403 -12.46693 -12.03475 -11.88193 -11.76051 -11.73174 -11.59893 -11.35900 -10.61415 -10.56309 -10.00266 -9.65654 -9.55022 -8.98704 -8.22730 -6.34042 0.08069 0.77896 1.13114 1.37662 1.40113 1.50899 1.63149 1.70699 2.05167 2.40361 2.82430 3.10896 3.33213 3.52251 3.64074 3.76036 3.99785 4.05407 4.12900 4.17303 4.27829 4.38498 4.40010 4.50527 4.60828 4.68318 4.68890 4.75025 4.79009 4.85646 4.95220 4.97593 5.00558 5.11908 5.19519 5.22899 5.31205 5.41109 5.49698 5.61894 5.65929 5.82595 6.18487 6.21792 6.58854 6.81098 7.21303 7.34819 8.89154 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.022889 B = 0.003248 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.982306 B = 8617.383709 C = 9085.238298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.028 3.972 10 C 0.122 3.878 11 N -0.586 5.586 12 C 0.499 3.501 13 O -0.604 6.604 14 C -0.119 4.119 15 C -0.137 4.137 16 C 0.079 3.921 17 H 0.132 0.868 18 C 0.143 3.857 19 H 0.108 0.892 20 C -0.139 4.139 21 C 0.046 3.954 22 N -0.457 5.457 23 C 0.071 3.929 24 C -0.127 4.127 25 C -0.200 4.200 26 S 0.116 5.884 27 C -0.266 4.266 28 H 0.263 0.737 29 H 0.013 0.987 30 H -0.031 1.031 31 H 0.085 0.915 32 H 0.053 0.947 33 H 0.100 0.900 34 H 0.127 0.873 35 H 0.056 0.944 36 H 0.101 0.899 37 H 0.049 0.951 38 H 0.075 0.925 39 H 0.057 0.943 40 H 0.095 0.905 41 H 0.156 0.844 42 H 0.191 0.809 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.960 -24.678 -8.231 26.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.581 4.581 8 H 0.080 0.920 9 C -0.010 4.010 10 C -0.001 4.001 11 N -0.316 5.316 12 C 0.290 3.710 13 O -0.486 6.486 14 C -0.159 4.159 15 C -0.176 4.176 16 C -0.027 4.027 17 H 0.150 0.850 18 C 0.039 3.961 19 H 0.125 0.875 20 C -0.178 4.178 21 C -0.081 4.081 22 N -0.178 5.178 23 C -0.036 4.036 24 C -0.158 4.158 25 C -0.335 4.335 26 S 0.378 5.622 27 C -0.404 4.404 28 H 0.072 0.928 29 H 0.031 0.969 30 H -0.013 1.013 31 H 0.103 0.897 32 H 0.072 0.928 33 H 0.118 0.882 34 H 0.145 0.855 35 H 0.075 0.925 36 H 0.120 0.880 37 H 0.067 0.933 38 H 0.094 0.906 39 H 0.076 0.924 40 H 0.113 0.887 41 H 0.174 0.826 42 H 0.208 0.792 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -5.008 -24.944 -7.706 26.583 hybrid contribution 0.786 2.361 0.431 2.525 sum -4.221 -22.583 -7.275 24.099 Atomic orbital electron populations 1.70109 1.07830 1.27715 1.51491 1.25959 0.95765 1.03343 0.94554 0.85425 0.78516 0.78237 0.78741 1.19070 1.20982 1.19000 1.21569 0.93595 0.92106 1.50865 0.92014 1.19198 0.94440 0.92630 0.94720 1.21522 0.94652 0.82402 1.01480 1.47189 1.55392 1.23090 1.05907 1.21011 0.79179 0.88518 0.82335 1.90707 1.55738 1.64723 1.37435 1.21585 1.00942 0.93103 1.00240 1.22254 0.98260 1.03664 0.93395 1.23272 0.96705 0.95000 0.87749 0.84986 1.21655 0.98547 0.92459 0.83443 0.87455 1.22840 0.96936 0.98153 0.99898 1.23013 0.95908 0.87254 1.01934 1.62811 1.20969 1.01626 1.32407 1.18132 0.91984 0.93328 1.00194 1.19979 1.01999 0.90816 1.02989 1.25879 0.96679 1.04676 1.06308 1.84280 1.19480 1.00257 1.58175 1.26119 1.01269 1.03032 1.09958 0.92832 0.96895 1.01260 0.89676 0.92800 0.88179 0.85511 0.92489 0.88030 0.93265 0.90647 0.92447 0.88715 0.82633 0.79161 0.82307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.97 13.29 21.45 0.28 -57.68 16 2 C 0.00 0.10 5.46 84.65 0.46 0.56 16 3 Si 0.97 45.32 29.54 68.60 2.03 47.35 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 5 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.54 -31.80 9.11 25.60 0.23 -31.56 16 8 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 9 C 0.03 1.53 5.00 29.85 0.15 1.68 16 10 C 0.12 5.37 5.07 86.38 0.44 5.81 16 11 N -0.59 -21.06 2.45 -799.24 -1.96 -23.02 16 12 C 0.50 18.64 7.46 87.77 0.66 19.30 16 13 O -0.60 -29.19 16.19 -3.05 -0.05 -29.24 16 14 C -0.12 -2.94 6.08 29.71 0.18 -2.76 16 15 C -0.14 -2.88 3.70 30.60 0.11 -2.76 16 16 C 0.08 1.64 3.55 44.81 0.16 1.80 16 17 H 0.13 2.25 8.14 -2.39 -0.02 2.23 16 18 C 0.14 3.93 3.14 46.22 0.14 4.07 16 19 H 0.11 2.70 7.98 -2.39 -0.02 2.68 16 20 C -0.14 -4.09 4.60 31.48 0.14 -3.94 16 21 C 0.05 1.05 5.86 86.51 0.51 1.56 16 22 N -0.46 -9.16 5.34 -659.79 -3.53 -12.68 16 23 C 0.07 1.26 4.11 36.81 0.15 1.41 16 24 C -0.13 -1.85 10.16 21.31 0.22 -1.63 16 25 C -0.20 -2.35 11.22 66.73 0.75 -1.60 16 26 S 0.12 1.61 23.33 -56.49 -1.32 0.29 16 27 C -0.27 -4.65 7.68 66.80 0.51 -4.13 16 28 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 29 H 0.01 0.71 6.29 -2.39 -0.02 0.70 16 30 H -0.03 -1.99 8.14 -2.39 -0.02 -2.01 16 31 H 0.08 3.32 7.88 -2.39 -0.02 3.30 16 32 H 0.05 2.60 7.13 -2.38 -0.02 2.58 16 33 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.13 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.06 1.40 5.90 -2.39 -0.01 1.38 16 36 H 0.10 1.77 6.31 -2.38 -0.02 1.76 16 37 H 0.05 1.79 7.48 -2.39 -0.02 1.77 16 38 H 0.07 2.34 8.08 -2.38 -0.02 2.32 16 39 H 0.06 1.28 5.19 -2.38 -0.01 1.26 16 40 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 42 H 0.19 1.20 8.06 -2.91 -0.02 1.17 16 43 H 0.16 2.95 5.77 -2.91 -0.02 2.93 16 Total: -1.00 -74.47 344.56 1.29 -73.18 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: 1.02 Total: 14.01 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: 4.82 Total: -12.21 kcal Atomic # 7 Polarization: -88.18 SS G_CDS: -5.20 Total: -93.38 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -0.05 Total: -29.24 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -1.32 Total: 0.29 kcal Total: -74.47 1.29 -73.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274830281.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.557 kcal (2) G-P(sol) polarization free energy of solvation -74.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds