Wall clock time and date at job start Tue Mar 31 2020 12:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86798 * 120.00188 * 2 1 4 4 H 1.48498 * 109.47537 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47351 * 300.00665 * 3 2 1 6 6 H 1.48506 * 109.47055 * 60.00061 * 3 2 1 7 7 C 1.37877 * 120.00182 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00362 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00127 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.47684 * 180.02562 * 9 7 2 11 11 O 1.45196 * 109.46947 * 60.00344 * 9 7 2 12 12 C 1.34232 * 117.00229 * 90.00206 * 11 9 7 13 13 O 1.20823 * 119.99423 * 0.02562 * 12 11 9 14 14 C 1.50699 * 120.00333 * 180.02562 * 12 11 9 15 15 H 1.08996 * 109.55255 * 59.79161 * 14 12 11 16 16 C 1.53176 * 109.55131 * 299.49353 * 14 12 11 17 17 C 1.53047 * 109.40117 * 181.53267 * 16 14 12 18 18 O 1.43048 * 109.44523 * 59.32570 * 17 16 14 19 19 C 1.42578 * 113.84146 * 301.25806 * 18 17 16 20 20 C 1.53425 * 113.55863 * 286.14807 * 19 18 17 21 21 C 1.53843 * 86.97638 * 220.04073 * 20 19 18 22 22 C 1.53400 * 113.63160 * 188.23053 * 19 18 17 23 23 C 1.52808 * 112.94092 * 57.11715 * 19 18 17 24 24 C 1.50703 * 109.47141 * 300.00690 * 9 7 2 25 25 C 1.34519 * 125.78893 * 264.99792 * 24 9 7 26 26 C 1.41381 * 106.84038 * 180.02562 * 25 24 9 27 27 C 1.34513 * 106.84434 * 359.97438 * 26 25 24 28 28 O 1.34304 * 125.79076 * 84.68698 * 24 9 7 29 29 H 0.97000 * 120.00589 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.49341 * 61.54704 * 16 14 12 31 31 H 1.08997 * 109.47476 * 301.50952 * 16 14 12 32 32 H 1.09002 * 109.47720 * 299.33054 * 17 16 14 33 33 H 1.09005 * 109.47388 * 179.31953 * 17 16 14 34 34 H 1.09007 * 113.63184 * 334.56004 * 20 19 18 35 35 H 1.08998 * 113.63702 * 105.52088 * 20 19 18 36 36 H 1.08994 * 113.60322 * 270.59665 * 21 20 19 37 37 H 1.09003 * 113.67809 * 139.73106 * 21 20 19 38 38 H 1.08998 * 113.62688 * 254.41361 * 22 19 18 39 39 H 1.09001 * 113.62367 * 25.27671 * 22 19 18 40 40 H 1.09000 * 109.56627 * 65.88121 * 23 19 18 41 41 H 1.08998 * 109.56793 * 186.10362 * 23 19 18 42 42 H 1.07998 * 126.57748 * 359.96639 * 25 24 9 43 43 H 1.07999 * 126.57723 * 179.97438 * 26 25 24 44 44 H 1.07990 * 125.79563 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 1.9593 -3.3277 -0.0005 11 8 0.4159 -2.5759 -1.1858 12 6 0.9622 -3.1258 -2.2817 13 8 2.1003 -3.5301 -2.2513 14 6 0.1559 -3.2389 -3.5498 15 1 -0.1512 -2.2455 -3.8767 16 6 -1.0831 -4.1025 -3.2942 17 6 -1.8791 -4.2467 -4.5934 18 8 -1.0547 -4.8544 -5.5921 19 6 0.1370 -4.1254 -5.8774 20 6 -0.1052 -2.8505 -6.6958 21 6 1.1756 -3.2028 -7.4717 22 6 0.9163 -4.6683 -7.0820 23 6 1.0066 -3.8983 -4.6417 24 6 0.3850 -2.5792 1.2302 25 6 0.7172 -3.1774 2.3883 26 6 -0.3815 -3.0149 3.2632 27 6 -1.3192 -2.3267 2.5876 28 8 -0.8471 -2.0605 1.3587 29 1 -0.4851 0.8400 0.0004 30 1 -1.7068 -3.6285 -2.5364 31 1 -0.7736 -5.0880 -2.9461 32 1 -2.1982 -3.2621 -4.9353 33 1 -2.7547 -4.8711 -4.4157 34 1 -1.0088 -2.8870 -7.3045 35 1 -0.0239 -1.9340 -6.1114 36 1 2.0815 -2.7875 -7.0301 37 1 1.1035 -3.0168 -8.5433 38 1 1.8193 -5.2140 -6.8082 39 1 0.2953 -5.2086 -7.7966 40 1 1.3857 -4.8546 -4.2813 41 1 1.8426 -3.2477 -4.8982 42 1 1.6448 -3.6852 2.6075 43 1 -0.4539 -3.3744 4.2790 44 1 -2.2860 -2.0344 2.9697 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346706133.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:14 Heat of formation + Delta-G solvation = -114.232923 kcal Electronic energy + Delta-G solvation = -28110.314184 eV Core-core repulsion = 24187.577718 eV Total energy + Delta-G solvation = -3922.736466 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.05745 -41.87433 -40.68408 -37.51318 -37.27502 -35.08267 -34.73120 -33.57900 -31.67712 -30.54010 -28.47071 -26.84719 -26.73125 -24.95009 -24.77808 -22.87944 -22.29225 -21.27164 -21.05006 -19.57126 -19.00492 -18.33044 -18.09626 -17.51508 -17.16964 -17.01087 -16.79606 -16.26560 -16.08852 -15.98546 -15.43729 -15.17353 -14.63705 -14.45645 -14.29677 -13.96596 -13.60017 -13.52524 -13.38547 -13.25846 -13.08024 -12.99268 -12.85757 -12.72947 -12.43716 -12.24940 -12.19488 -12.00801 -11.89166 -11.75890 -11.54296 -11.27126 -11.08829 -10.90539 -10.79832 -10.51061 -10.37052 -9.09775 -8.25440 -6.56154 1.16385 1.33670 1.35809 1.44561 1.47597 1.88343 2.14221 2.30707 2.57202 2.80257 3.04377 3.44115 3.56647 3.65480 3.72102 3.79621 3.85147 4.02160 4.18828 4.21438 4.34633 4.38714 4.42346 4.45281 4.51753 4.64334 4.67539 4.76049 4.83004 4.85642 4.94213 4.97969 5.04411 5.08106 5.11914 5.15399 5.22037 5.32139 5.41662 5.43492 5.54297 5.76702 5.87169 5.95574 6.29947 6.48126 6.69240 7.08395 7.23077 8.72464 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.014338 B = 0.004263 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.372228 B = 6566.080930 C = 7625.078725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.043 3.957 3 Si 0.955 3.045 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.577 4.577 8 H 0.059 0.941 9 C 0.278 3.722 10 H 0.054 0.946 11 O -0.344 6.344 12 C 0.455 3.545 13 O -0.556 6.556 14 C -0.075 4.075 15 H 0.108 0.892 16 C -0.140 4.140 17 C 0.069 3.931 18 O -0.376 6.376 19 C 0.085 3.915 20 C -0.162 4.162 21 C -0.133 4.133 22 C -0.116 4.116 23 C -0.100 4.100 24 C 0.042 3.958 25 C -0.266 4.266 26 C -0.219 4.219 27 C -0.081 4.081 28 O -0.144 6.144 29 H 0.269 0.731 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.119 0.881 34 H 0.100 0.900 35 H 0.064 0.936 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.075 0.925 39 H 0.102 0.898 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.143 0.857 43 H 0.170 0.830 44 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.524 -5.576 -9.516 12.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.165 4.165 3 Si 0.779 3.221 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.613 4.613 8 H 0.077 0.923 9 C 0.225 3.775 10 H 0.072 0.928 11 O -0.259 6.259 12 C 0.300 3.700 13 O -0.449 6.449 14 C -0.094 4.094 15 H 0.126 0.874 16 C -0.178 4.178 17 C -0.007 4.007 18 O -0.296 6.296 19 C 0.045 3.955 20 C -0.199 4.199 21 C -0.170 4.170 22 C -0.153 4.153 23 C -0.137 4.137 24 C -0.011 4.011 25 C -0.285 4.285 26 C -0.238 4.238 27 C -0.149 4.149 28 O -0.037 6.037 29 H 0.079 0.921 30 H 0.102 0.898 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.137 0.863 34 H 0.119 0.881 35 H 0.082 0.918 36 H 0.099 0.901 37 H 0.112 0.888 38 H 0.094 0.906 39 H 0.120 0.880 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.161 0.839 43 H 0.188 0.812 44 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -5.590 -5.588 -9.767 12.565 hybrid contribution 1.019 1.112 1.003 1.811 sum -4.571 -4.477 -8.764 10.851 Atomic orbital electron populations 1.70151 1.06569 1.27886 1.43091 1.25778 0.95847 1.02323 0.92585 0.85562 0.79071 0.79128 0.78348 1.19546 1.19606 1.19692 1.21405 0.93011 0.90835 1.56085 0.92323 1.18611 0.85304 0.96981 0.76610 0.92793 1.86697 1.47415 1.70802 1.20953 1.24082 0.86229 0.72868 0.86849 1.90507 1.20799 1.48270 1.85286 1.21100 0.96300 1.02718 0.89325 0.87446 1.22114 0.95486 0.99524 1.00654 1.22634 0.92992 0.99790 0.85303 1.87911 1.32962 1.50567 1.58116 1.22815 0.85835 0.94119 0.92727 1.23559 1.00002 0.97250 0.99106 1.22715 0.97339 0.95431 1.01550 1.23024 0.99464 0.97636 0.95200 1.21656 0.97525 1.01334 0.93217 1.22697 0.84731 0.95650 0.98015 1.21551 1.02512 1.10100 0.94383 1.21898 0.93844 1.06135 1.01886 1.24728 1.01964 1.03700 0.84508 1.84350 1.27881 1.59463 1.32040 0.92140 0.89844 0.91536 0.91713 0.86269 0.88144 0.91770 0.90143 0.88848 0.90604 0.87980 0.91441 0.90264 0.83880 0.81250 0.75790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.45 10.62 21.45 0.23 -46.22 16 2 C 0.04 2.36 5.24 84.66 0.44 2.80 16 3 Si 0.95 42.82 29.54 68.60 2.03 44.85 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.58 -32.86 8.90 25.60 0.23 -32.63 16 8 H 0.06 3.39 7.81 -2.91 -0.02 3.36 16 9 C 0.28 14.99 2.58 29.10 0.07 15.07 16 10 H 0.05 2.95 7.16 -2.39 -0.02 2.94 16 11 O -0.34 -17.78 9.19 -48.81 -0.45 -18.23 16 12 C 0.45 20.92 7.22 71.24 0.51 21.43 16 13 O -0.56 -28.02 15.15 21.97 0.33 -27.68 16 14 C -0.08 -2.60 2.63 -11.38 -0.03 -2.63 16 15 H 0.11 3.60 7.61 -2.39 -0.02 3.59 16 16 C -0.14 -4.15 5.31 30.67 0.16 -3.99 16 17 C 0.07 1.60 6.74 72.00 0.49 2.09 16 18 O -0.38 -9.64 10.53 -148.98 -1.57 -11.21 16 19 C 0.08 2.06 1.16 -10.58 -0.01 2.05 16 20 C -0.16 -3.35 6.90 31.02 0.21 -3.14 16 21 C -0.13 -2.39 7.73 31.16 0.24 -2.15 16 22 C -0.12 -2.28 7.50 31.01 0.23 -2.05 16 23 C -0.10 -3.02 3.81 30.63 0.12 -2.91 16 24 C 0.04 2.12 5.59 24.83 0.14 2.26 16 25 C -0.27 -11.77 10.81 22.19 0.24 -11.53 16 26 C -0.22 -8.14 10.91 22.19 0.24 -7.90 16 27 C -0.08 -3.11 12.09 66.97 0.81 -2.30 16 28 O -0.14 -7.11 8.87 0.77 0.01 -7.10 16 29 H 0.27 13.93 8.31 -92.71 -0.77 13.15 16 30 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 31 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.06 1.38 7.83 -2.39 -0.02 1.36 16 33 H 0.12 2.21 8.14 -2.38 -0.02 2.20 16 34 H 0.10 1.84 8.14 -2.38 -0.02 1.82 16 35 H 0.06 1.44 7.56 -2.39 -0.02 1.42 16 36 H 0.08 1.53 7.61 -2.39 -0.02 1.51 16 37 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.08 1.48 8.09 -2.39 -0.02 1.46 16 39 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.07 2.22 7.96 -2.39 -0.02 2.20 16 41 H 0.08 2.44 7.31 -2.39 -0.02 2.42 16 42 H 0.14 5.81 8.06 -2.91 -0.02 5.78 16 43 H 0.17 4.86 8.06 -2.91 -0.02 4.83 16 44 H 0.23 6.30 8.06 -2.92 -0.02 6.28 16 Total: -1.00 -68.29 360.62 5.67 -62.62 By element: Atomic # 1 Polarization: 27.51 SS G_CDS: 0.99 Total: 28.51 kcal Atomic # 6 Polarization: -29.63 SS G_CDS: 4.10 Total: -25.53 kcal Atomic # 7 Polarization: -46.45 SS G_CDS: 0.23 Total: -46.22 kcal Atomic # 8 Polarization: -62.55 SS G_CDS: -1.68 Total: -64.23 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -68.29 5.67 -62.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346706133.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.612 kcal (2) G-P(sol) polarization free energy of solvation -68.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds