Wall clock time and date at job start Tue Mar 31 2020 12:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99569 * 2 1 4 4 H 1.48502 * 109.46950 * 239.99683 * 3 2 1 5 5 H 1.48492 * 109.47464 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47177 * 119.99974 * 3 2 1 7 7 C 1.37877 * 120.00184 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99817 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99846 * 0.02562 * 7 2 1 10 10 H 1.09006 * 109.47001 * 179.97438 * 9 7 2 11 11 O 1.45200 * 109.47407 * 299.99565 * 9 7 2 12 12 C 1.34226 * 117.00003 * 270.00347 * 11 9 7 13 13 O 1.20827 * 119.99788 * 359.97438 * 12 11 9 14 14 C 1.50700 * 120.00098 * 179.97438 * 12 11 9 15 15 H 1.09000 * 109.55414 * 59.99481 * 14 12 11 16 16 C 1.53154 * 109.55480 * 299.79807 * 14 12 11 17 17 C 1.53058 * 109.40742 * 181.62714 * 16 14 12 18 18 O 1.43042 * 109.52630 * 59.16643 * 17 16 14 19 19 C 1.42579 * 113.84639 * 301.32463 * 18 17 16 20 20 C 1.53398 * 113.62439 * 188.21924 * 19 18 17 21 21 C 1.53856 * 86.98142 * 89.43761 * 20 19 18 22 22 C 1.53427 * 113.56793 * 286.14221 * 19 18 17 23 23 C 1.52812 * 112.94021 * 57.11295 * 19 18 17 24 24 C 1.50706 * 109.47269 * 59.99981 * 9 7 2 25 25 C 1.34512 * 125.79026 * 99.71420 * 24 9 7 26 26 C 1.41386 * 106.83660 * 179.88925 * 25 24 9 27 27 C 1.34512 * 106.84135 * 0.37229 * 26 25 24 28 28 O 1.34305 * 108.42320 * 359.77173 * 27 26 25 29 29 H 0.96997 * 120.00061 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.48005 * 301.50288 * 16 14 12 31 31 H 1.08996 * 109.48580 * 61.53997 * 16 14 12 32 32 H 1.09000 * 109.38780 * 299.17829 * 17 16 14 33 33 H 1.08995 * 109.48159 * 179.21244 * 17 16 14 34 34 H 1.09000 * 113.63248 * 203.96257 * 20 19 18 35 35 H 1.09001 * 113.63305 * 334.91874 * 20 19 18 36 36 H 1.08996 * 113.60647 * 270.60577 * 21 20 19 37 37 H 1.08998 * 113.68034 * 139.73611 * 21 20 19 38 38 H 1.08996 * 113.62952 * 25.03531 * 22 19 18 39 39 H 1.09002 * 113.62823 * 155.90068 * 22 19 18 40 40 H 1.08994 * 109.56562 * 186.21762 * 23 19 18 41 41 H 1.09003 * 109.66084 * 65.93132 * 23 19 18 42 42 H 1.07998 * 126.57888 * 0.02562 * 25 24 9 43 43 H 1.07998 * 126.57496 * 180.16441 * 26 25 24 44 44 H 1.07999 * 125.78629 * 179.74589 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 1.9595 -3.3276 0.0005 11 8 0.4159 -2.5759 1.1858 12 6 0.9622 -3.1258 2.2816 13 8 2.1005 -3.5300 2.2513 14 6 0.1560 -3.2389 3.5498 15 1 -0.7304 -3.8460 3.3656 16 6 -0.2670 -1.8423 4.0147 17 6 -1.0509 -1.9579 5.3242 18 8 -0.2323 -2.5813 6.3180 19 6 0.2249 -3.8821 5.9551 20 6 0.9315 -4.6257 7.0957 21 6 -0.4525 -5.1709 7.4887 22 6 -0.8676 -4.9573 6.0228 23 6 1.0083 -3.8937 4.6431 24 6 0.3852 -2.5792 -1.2303 25 6 0.6797 -3.2525 -2.3569 26 6 -0.4040 -3.0600 -3.2442 27 6 -1.2922 -2.2738 -2.6099 28 8 -0.8089 -1.9857 -1.3904 29 1 -0.4850 0.8400 -0.0004 30 1 0.6195 -1.2290 4.1763 31 1 -0.8949 -1.3802 3.2530 32 1 -1.9443 -2.5602 5.1592 33 1 -1.3405 -0.9634 5.6635 34 1 1.6232 -5.3953 6.7531 35 1 1.3689 -3.9643 7.8435 36 1 -0.9892 -4.5337 8.1915 37 1 -0.4408 -6.2182 7.7908 38 1 -1.8769 -4.5624 5.9076 39 1 -0.6739 -5.8179 5.3825 40 1 1.2350 -4.9222 4.3624 41 1 1.9366 -3.3357 4.7654 42 1 1.5718 -3.8311 -2.5463 43 1 -0.4988 -3.4637 -4.2414 44 1 -2.2340 -1.9319 -3.0130 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346706134.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:17 Heat of formation + Delta-G solvation = -95.239864 kcal Electronic energy + Delta-G solvation = -28110.847531 eV Core-core repulsion = 24188.934665 eV Total energy + Delta-G solvation = -3921.912866 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.32554 -40.61852 -39.06866 -36.20011 -35.51715 -33.54966 -32.89668 -31.85009 -29.85396 -29.57247 -26.67026 -25.86001 -25.63987 -23.28536 -23.09117 -21.53970 -20.62210 -19.52951 -19.34015 -18.97631 -17.14791 -16.64578 -16.49253 -16.05938 -15.80619 -15.09875 -15.00537 -14.79629 -14.55116 -14.44084 -14.24742 -13.79350 -13.32267 -13.20698 -12.98994 -12.46178 -12.39736 -11.93904 -11.80274 -11.69442 -11.52947 -11.40501 -11.29836 -11.05258 -10.98909 -10.90851 -10.84400 -10.73816 -10.49778 -10.37625 -9.95372 -9.83324 -9.52167 -9.18304 -9.04953 -8.84700 -8.75049 -7.37276 -6.24016 -4.45577 2.88714 3.18944 3.22979 3.24520 3.29110 3.53327 3.68891 3.87301 4.23491 4.26359 4.48440 4.57736 4.75437 4.88759 5.01566 5.05615 5.13368 5.24537 5.33462 5.48557 5.57736 5.63039 5.65072 5.76212 5.80259 5.83095 5.90298 5.93781 5.99098 5.99881 6.05471 6.23538 6.28834 6.34190 6.45721 6.48043 6.53645 6.78815 6.88061 7.19119 7.35047 7.46202 7.60923 7.77165 7.80971 8.40310 8.57054 8.97226 9.28033 10.74897 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.015112 B = 0.004121 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.390229 B = 6792.043607 C = 7644.363333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.082 3.918 3 Si 0.895 3.105 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.549 4.549 8 H 0.072 0.928 9 C 0.279 3.721 10 H 0.070 0.930 11 O -0.333 6.333 12 C 0.464 3.536 13 O -0.530 6.530 14 C -0.080 4.080 15 H 0.097 0.903 16 C -0.144 4.144 17 C 0.064 3.936 18 O -0.359 6.359 19 C 0.095 3.905 20 C -0.124 4.124 21 C -0.134 4.134 22 C -0.166 4.166 23 C -0.115 4.115 24 C 0.080 3.920 25 C -0.266 4.266 26 C -0.222 4.222 27 C -0.083 4.083 28 O -0.111 6.111 29 H 0.268 0.732 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.052 0.948 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.132 0.868 43 H 0.130 0.870 44 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.878 -6.898 8.760 12.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.129 4.129 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.585 4.585 8 H 0.091 0.909 9 C 0.226 3.774 10 H 0.087 0.913 11 O -0.247 6.247 12 C 0.307 3.693 13 O -0.421 6.421 14 C -0.099 4.099 15 H 0.115 0.885 16 C -0.181 4.181 17 C -0.012 4.012 18 O -0.278 6.278 19 C 0.055 3.945 20 C -0.162 4.162 21 C -0.172 4.172 22 C -0.204 4.204 23 C -0.153 4.153 24 C 0.026 3.974 25 C -0.285 4.285 26 C -0.242 4.242 27 C -0.152 4.152 28 O -0.003 6.003 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.114 0.886 32 H 0.070 0.930 33 H 0.115 0.885 34 H 0.112 0.888 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.107 0.893 40 H 0.098 0.902 41 H 0.100 0.900 42 H 0.150 0.850 43 H 0.148 0.852 44 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -4.845 -6.608 9.083 12.233 hybrid contribution 0.512 0.864 -0.911 1.355 sum -4.333 -5.744 8.172 10.888 Atomic orbital electron populations 1.70030 1.05656 1.27342 1.42724 1.25128 0.94988 0.99634 0.93118 0.86595 0.79876 0.82229 0.79156 1.19774 1.20811 1.19733 1.21208 0.93413 0.89350 1.54489 0.90939 1.18756 0.84737 0.98192 0.75677 0.91253 1.86716 1.47451 1.70222 1.20360 1.23079 0.86125 0.74046 0.86077 1.90538 1.19375 1.47295 1.84916 1.20997 0.98930 0.98922 0.91095 0.88484 1.22093 1.02354 0.95593 0.98097 1.22618 0.92542 0.97928 0.88111 1.87872 1.68729 1.29000 1.42155 1.22224 0.94594 0.83380 0.94301 1.22946 0.96917 0.98924 0.97377 1.22777 0.96886 1.00890 0.96605 1.23517 0.99697 0.99614 0.97542 1.21905 0.98951 1.02068 0.92390 1.22819 0.84779 0.92037 0.97768 1.21193 1.02089 1.09819 0.95437 1.21494 0.96276 1.05492 1.00888 1.23816 1.00849 1.03597 0.86931 1.84473 1.29674 1.56085 1.30038 0.92247 0.90556 0.88560 0.92983 0.88476 0.88778 0.90537 0.89979 0.91526 0.91011 0.89275 0.90229 0.90020 0.85000 0.85187 0.80050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.14 10.45 55.43 0.58 -21.56 16 2 C 0.08 2.18 5.24 -17.82 -0.09 2.09 16 3 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 7 C -0.55 -14.99 8.90 -34.44 -0.31 -15.29 16 8 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 9 C 0.28 7.16 2.58 -29.03 -0.07 7.09 16 10 H 0.07 1.76 7.15 -51.93 -0.37 1.39 16 11 O -0.33 -8.20 9.20 -41.27 -0.38 -8.58 16 12 C 0.46 10.17 7.23 36.01 0.26 10.43 16 13 O -0.53 -12.68 15.15 -18.75 -0.28 -12.96 16 14 C -0.08 -1.35 2.64 -91.53 -0.24 -1.59 16 15 H 0.10 1.47 8.11 -51.93 -0.42 1.05 16 16 C -0.14 -2.33 5.31 -26.62 -0.14 -2.47 16 17 C 0.06 0.85 6.73 37.19 0.25 1.10 16 18 O -0.36 -5.07 10.45 -35.23 -0.37 -5.44 16 19 C 0.10 1.21 1.03 -90.29 -0.09 1.12 16 20 C -0.12 -1.34 7.47 -26.08 -0.19 -1.53 16 21 C -0.13 -1.30 8.02 -25.85 -0.21 -1.50 16 22 C -0.17 -1.79 7.11 -26.07 -0.19 -1.97 16 23 C -0.12 -1.73 3.90 -26.66 -0.10 -1.83 16 24 C 0.08 1.97 5.68 -35.62 -0.20 1.77 16 25 C -0.27 -5.87 10.80 -39.70 -0.43 -6.30 16 26 C -0.22 -4.37 10.91 -39.70 -0.43 -4.80 16 27 C -0.08 -1.67 12.09 29.42 0.36 -1.31 16 28 O -0.11 -2.73 8.63 4.47 0.04 -2.70 16 29 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 30 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.10 1.69 8.14 -51.93 -0.42 1.27 16 32 H 0.05 0.61 7.21 -51.93 -0.37 0.24 16 33 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.09 0.91 8.09 -51.93 -0.42 0.49 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.76 7.26 -51.93 -0.38 0.39 16 39 H 0.09 0.89 8.02 -51.93 -0.42 0.48 16 40 H 0.08 1.13 8.04 -51.93 -0.42 0.71 16 41 H 0.08 1.37 7.96 -51.93 -0.41 0.95 16 42 H 0.13 2.64 8.06 -52.49 -0.42 2.22 16 43 H 0.13 2.11 8.06 -52.49 -0.42 1.69 16 44 H 0.18 2.88 8.06 -52.49 -0.42 2.45 16 LS Contribution 361.35 15.07 5.45 5.45 Total: -1.00 -30.55 361.35 -8.39 -38.94 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -6.56 Total: 6.22 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: -1.84 Total: -15.02 kcal Atomic # 7 Polarization: -22.14 SS G_CDS: 0.58 Total: -21.56 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -0.99 Total: -29.68 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.55 -8.39 -38.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346706134.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.298 kcal (2) G-P(sol) polarization free energy of solvation -30.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds