Wall clock time and date at job start Tue Mar 31 2020 12:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38262 * 120.00098 * 2 1 4 4 C 1.38204 * 120.00535 * 179.97438 * 3 2 1 5 5 C 1.38254 * 119.99816 * 0.13864 * 4 3 2 6 6 C 1.38220 * 120.00044 * 359.83750 * 5 4 3 7 7 C 1.50702 * 120.00039 * 180.36613 * 6 5 4 8 8 H 1.08993 * 109.47064 * 214.72604 * 7 6 5 9 9 O 1.45197 * 109.47092 * 334.72988 * 7 6 5 10 10 C 1.34226 * 116.99763 * 209.99539 * 9 7 6 11 11 O 1.20826 * 120.00394 * 0.02562 * 10 9 7 12 12 C 1.50708 * 120.00238 * 179.97438 * 10 9 7 13 13 C 1.52991 * 109.47292 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.47256 * 180.02562 * 13 12 10 15 15 C 1.50697 * 109.47420 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99686 * 359.97438 * 15 14 13 17 17 C 1.37871 * 119.99941 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00133 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99775 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47206 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46994 * 120.00037 * 19 17 15 22 22 H 1.48496 * 109.46973 * 239.99653 * 19 17 15 23 23 C 1.50702 * 109.46725 * 94.72484 * 7 6 5 24 24 O 1.20821 * 120.00429 * 244.99630 * 23 7 6 25 25 O 1.34234 * 119.99631 * 65.00122 * 23 7 6 26 26 C 1.38207 * 120.00352 * 180.02562 * 2 1 3 27 27 C 1.50701 * 119.99822 * 359.97438 * 26 2 1 28 28 H 1.08996 * 109.47441 * 269.97566 * 1 2 3 29 29 H 1.09003 * 109.47255 * 29.97979 * 1 2 3 30 30 H 1.09001 * 109.46747 * 149.97368 * 1 2 3 31 31 H 1.08013 * 119.99532 * 0.02562 * 3 2 1 32 32 H 1.07997 * 120.00478 * 180.02562 * 4 3 2 33 33 H 1.08002 * 120.00345 * 179.97438 * 5 4 3 34 34 H 1.08996 * 109.47077 * 300.00665 * 12 10 9 35 35 H 1.09001 * 109.46982 * 60.00102 * 12 10 9 36 36 H 1.09003 * 109.47016 * 300.00114 * 13 12 10 37 37 H 1.09001 * 109.47240 * 59.99996 * 13 12 10 38 38 H 1.08996 * 109.46928 * 300.00287 * 14 13 12 39 39 H 1.09001 * 109.47167 * 59.99746 * 14 13 12 40 40 H 0.97002 * 119.99938 * 180.02562 * 18 17 15 41 41 H 0.96702 * 116.99670 * 179.97438 * 25 23 7 42 42 H 1.09002 * 109.46961 * 269.97690 * 27 26 2 43 43 H 1.08993 * 109.47341 * 29.98219 * 27 26 2 44 44 H 1.09001 * 109.46864 * 149.98303 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5803 1.1975 0.0005 5 6 4.2717 0.0002 -0.0018 6 6 3.5806 -1.1969 -0.0013 7 6 4.3342 -2.5019 0.0044 8 1 3.7865 -3.2403 -0.5811 9 8 5.6503 -2.3035 -0.5759 10 6 6.2008 -3.3506 -1.2100 11 8 5.6027 -4.3982 -1.2783 12 6 7.5646 -3.2193 -1.8378 13 6 7.9554 -4.5466 -2.4907 14 6 9.3402 -4.4136 -3.1275 15 6 9.7254 -5.7211 -3.7701 16 1 9.0503 -6.5629 -3.7281 17 6 10.9402 -5.8429 -4.4107 18 7 11.7626 -4.8178 -4.4613 19 14 11.4174 -7.4635 -5.2078 20 1 10.3256 -8.4511 -5.0134 21 1 11.6413 -7.2534 -6.6608 22 1 12.6643 -7.9739 -4.5836 23 6 4.4791 -2.9920 1.4222 24 8 5.5748 -3.0711 1.9251 25 8 3.3907 -3.3407 2.1262 26 6 2.1981 -1.1969 -0.0005 27 6 1.4446 -2.5020 -0.0005 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5143 31 1 1.6582 2.1328 0.0004 32 1 4.1203 2.1328 0.0010 33 1 5.3517 0.0002 -0.0018 34 1 7.5423 -2.4352 -2.5945 35 1 8.2948 -2.9628 -1.0702 36 1 7.9776 -5.3310 -1.7342 37 1 7.2252 -4.8028 -3.2584 38 1 9.3184 -3.6290 -3.8839 39 1 10.0702 -4.1576 -2.3596 40 1 12.6172 -4.9034 -4.9123 41 1 3.5337 -3.6494 3.0314 42 1 1.2637 -2.8171 1.0272 43 1 0.4919 -2.3715 -0.5136 44 1 2.0334 -3.2614 -0.5150 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600519976.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:32 Heat of formation + Delta-G solvation = -171.766004 kcal Electronic energy + Delta-G solvation = -26522.653783 eV Core-core repulsion = 22597.422495 eV Total energy + Delta-G solvation = -3925.231288 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.37099 -39.90669 -39.72029 -36.87520 -36.21303 -34.34653 -33.69827 -33.49678 -32.11620 -29.29152 -28.02829 -27.39698 -26.58986 -24.30503 -22.91415 -21.70956 -21.10210 -20.53417 -19.85916 -18.49706 -17.71802 -17.48854 -16.96810 -16.32080 -16.04856 -15.82829 -15.63235 -15.48732 -14.62213 -14.46461 -14.37071 -14.00449 -13.55718 -13.34489 -13.28169 -13.12583 -12.92068 -12.70830 -12.30670 -12.14084 -12.01156 -11.92247 -11.84391 -11.70508 -11.40653 -11.25326 -11.12988 -10.85499 -10.72055 -10.64822 -10.56825 -10.34317 -9.75215 -9.42288 -9.09028 -9.02157 -8.83591 -8.34532 -5.99672 -4.01525 0.87810 1.07431 1.87817 2.07624 2.40223 2.94618 3.32848 3.40206 3.45039 3.45981 4.09785 4.44031 4.47737 4.48639 4.62384 4.71106 4.77683 4.92087 4.98904 5.03862 5.19982 5.30915 5.36562 5.42087 5.42938 5.53934 5.55672 5.58631 5.61228 5.73538 5.95022 5.98579 6.15668 6.16937 6.20548 6.29158 6.38942 6.60098 6.66957 6.79670 7.05276 7.54199 7.66752 7.78086 7.83155 8.00056 8.42563 9.05323 9.62632 11.11816 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.021626 B = 0.002415 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.419006 B =11591.708797 C =11933.023408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.092 4.092 3 C -0.104 4.104 4 C -0.125 4.125 5 C -0.086 4.086 6 C -0.097 4.097 7 C 0.141 3.859 8 H 0.132 0.868 9 O -0.328 6.328 10 C 0.464 3.536 11 O -0.503 6.503 12 C -0.109 4.109 13 C -0.100 4.100 14 C 0.021 3.979 15 C -0.519 4.519 16 H 0.057 0.943 17 C 0.056 3.944 18 N -0.896 5.896 19 Si 0.893 3.107 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.474 3.526 24 O -0.493 6.493 25 O -0.506 6.506 26 C -0.055 4.055 27 C -0.127 4.127 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.124 0.876 32 H 0.127 0.873 33 H 0.135 0.865 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.260 0.740 41 H 0.413 0.587 42 H 0.086 0.914 43 H 0.074 0.926 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.264 12.803 12.472 30.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.092 4.092 3 C -0.122 4.122 4 C -0.143 4.143 5 C -0.104 4.104 6 C -0.098 4.098 7 C 0.084 3.916 8 H 0.149 0.851 9 O -0.245 6.245 10 C 0.308 3.692 11 O -0.389 6.389 12 C -0.146 4.146 13 C -0.138 4.138 14 C -0.016 4.016 15 C -0.557 4.557 16 H 0.075 0.925 17 C -0.145 4.145 18 N -0.535 5.535 19 Si 0.721 3.279 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 C 0.314 3.686 24 O -0.378 6.378 25 O -0.319 6.319 26 C -0.055 4.055 27 C -0.183 4.183 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.142 0.858 32 H 0.145 0.855 33 H 0.153 0.847 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.070 0.930 41 H 0.272 0.728 42 H 0.104 0.896 43 H 0.092 0.908 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -24.051 12.638 12.136 29.756 hybrid contribution 0.559 -1.080 0.222 1.237 sum -23.491 11.558 12.358 28.950 Atomic orbital electron populations 1.20846 0.90872 1.03032 1.02454 1.19680 0.96154 0.92178 1.01235 1.21125 0.94319 0.97511 0.99266 1.21137 0.94224 0.98002 1.00934 1.21095 1.00955 0.91271 0.97049 1.18960 0.92618 0.92126 1.06063 1.20518 0.84388 0.97813 0.88835 0.85060 1.86728 1.31177 1.41645 1.64973 1.24720 0.89188 0.80950 0.74329 1.90644 1.62707 1.28870 1.56705 1.21752 0.87926 1.03836 1.01102 1.21607 1.00576 0.92248 0.99334 1.19132 0.89394 0.97487 0.95615 1.21262 1.02206 0.97718 1.34523 0.92484 1.25021 0.96532 0.96591 0.96370 1.69973 1.09679 1.30062 1.43826 0.86523 0.78439 0.83948 0.79037 1.19703 1.21009 1.21010 1.23394 0.82276 0.74042 0.88881 1.90777 1.27598 1.49130 1.70344 1.84496 1.37986 1.77637 1.31751 1.19475 0.91826 0.95723 0.98460 1.21026 1.00101 0.93631 1.03516 0.91070 0.91522 0.90955 0.85786 0.85474 0.84694 0.87709 0.87618 0.92358 0.92317 0.96268 0.96269 0.93046 0.72788 0.89561 0.90767 0.91448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.65 9.60 36.00 0.35 -0.31 16 2 C -0.09 -0.77 5.88 -104.63 -0.62 -1.39 16 3 C -0.10 -0.84 9.70 -39.59 -0.38 -1.22 16 4 C -0.13 -1.11 10.05 -39.59 -0.40 -1.51 16 5 C -0.09 -0.93 9.36 -39.58 -0.37 -1.30 16 6 C -0.10 -1.10 5.04 -104.62 -0.53 -1.63 16 7 C 0.14 1.84 2.20 -29.03 -0.06 1.78 16 8 H 0.13 1.68 5.17 -51.93 -0.27 1.41 16 9 O -0.33 -4.93 8.26 -45.89 -0.38 -5.31 16 10 C 0.46 7.92 7.92 36.01 0.29 8.21 16 11 O -0.50 -9.66 15.20 -18.75 -0.29 -9.94 16 12 C -0.11 -1.86 5.81 -27.88 -0.16 -2.02 16 13 C -0.10 -2.12 4.44 -26.73 -0.12 -2.24 16 14 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 15 C -0.52 -14.89 9.11 -34.44 -0.31 -15.21 16 16 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 19 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 20 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 C 0.47 6.23 7.61 36.01 0.27 6.51 16 24 O -0.49 -8.15 17.27 -25.39 -0.44 -8.59 16 25 O -0.51 -4.55 11.72 -39.27 -0.46 -5.01 16 26 C -0.05 -0.52 5.88 -104.63 -0.62 -1.14 16 27 C -0.13 -0.99 8.45 36.01 0.30 -0.69 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 30 H 0.07 0.37 5.95 -51.93 -0.31 0.06 16 31 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 32 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 33 H 0.14 1.49 7.34 -52.49 -0.39 1.10 16 34 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 35 H 0.11 1.70 8.14 -51.93 -0.42 1.27 16 36 H 0.06 1.28 8.10 -51.93 -0.42 0.86 16 37 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 38 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.41 1.97 9.10 45.56 0.41 2.38 16 42 H 0.09 0.62 7.24 -51.93 -0.38 0.24 16 43 H 0.07 0.45 5.95 -51.93 -0.31 0.15 16 44 H 0.07 0.58 6.03 -51.93 -0.31 0.26 16 LS Contribution 372.02 15.07 5.61 5.61 Total: -1.00 -35.14 372.02 -8.14 -43.28 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -5.31 Total: -0.49 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: -2.59 Total: -10.24 kcal Atomic # 7 Polarization: -26.97 SS G_CDS: 0.74 Total: -26.23 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -1.56 Total: -28.86 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.14 -8.14 -43.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600519976.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.484 kcal (2) G-P(sol) polarization free energy of solvation -35.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds