Wall clock time and date at job start Tue Mar 31 2020 12:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38091 * 119.84706 * 2 1 4 4 C 1.39718 * 120.14936 * 180.30195 * 3 2 1 5 5 C 1.47743 * 120.07608 * 179.71653 * 4 3 2 6 6 O 1.21468 * 120.00440 * 359.72593 * 5 4 3 7 7 O 1.34711 * 120.00226 * 179.72605 * 5 4 3 8 8 C 1.39377 * 119.85054 * 359.44117 * 4 3 2 9 9 C 1.39335 * 119.69161 * 0.27951 * 8 4 3 10 10 C 1.47740 * 120.07403 * 179.97438 * 9 8 4 11 11 O 1.21474 * 120.00256 * 179.97438 * 10 9 8 12 12 O 1.34710 * 120.00278 * 0.02562 * 10 9 8 13 13 C 1.45199 * 117.00163 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.46801 * 179.97438 * 13 12 10 15 15 C 1.52995 * 109.47235 * 299.99475 * 14 13 12 16 16 C 1.52994 * 109.47228 * 59.99960 * 14 13 12 17 17 C 1.53004 * 109.46864 * 180.02562 * 14 13 12 18 18 C 1.50703 * 109.47196 * 180.02562 * 17 14 13 19 19 H 1.07999 * 119.99460 * 0.02562 * 18 17 14 20 20 C 1.37877 * 120.00010 * 179.97438 * 18 17 14 21 21 N 1.31513 * 120.00097 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99920 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47192 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46977 * 119.99833 * 22 20 18 25 25 H 1.48499 * 109.47041 * 240.00330 * 22 20 18 26 26 C 1.38051 * 119.84571 * 179.74413 * 2 1 3 27 27 H 1.08998 * 109.46675 * 270.25536 * 1 2 3 28 28 H 1.08995 * 109.47201 * 30.25200 * 1 2 3 29 29 H 1.09001 * 109.47331 * 150.25856 * 1 2 3 30 30 H 1.08002 * 119.92299 * 0.02562 * 3 2 1 31 31 H 0.96700 * 117.00324 * 180.02562 * 7 5 4 32 32 H 1.07997 * 120.15752 * 180.25160 * 8 4 3 33 33 H 1.08994 * 109.47066 * 299.99252 * 13 12 10 34 34 H 1.08997 * 109.47160 * 59.99395 * 13 12 10 35 35 H 1.09004 * 109.47294 * 60.00164 * 15 14 13 36 36 H 1.08994 * 109.47285 * 180.02562 * 15 14 13 37 37 H 1.09005 * 109.47618 * 300.00564 * 15 14 13 38 38 H 1.08994 * 109.47344 * 59.99910 * 16 14 13 39 39 H 1.09003 * 109.46982 * 179.97438 * 16 14 13 40 40 H 1.08996 * 109.47325 * 299.99474 * 16 14 13 41 41 H 1.09008 * 109.47034 * 299.99747 * 17 14 13 42 42 H 1.08997 * 109.47201 * 59.99736 * 17 14 13 43 43 H 0.97000 * 120.00120 * 179.97438 * 21 20 18 44 44 H 1.08000 * 119.92450 * 359.95673 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1943 1.1977 0.0000 4 6 3.5915 1.2051 -0.0064 5 6 4.3251 2.4875 -0.0127 6 8 3.7137 3.5371 -0.0174 7 8 5.6722 2.4929 -0.0132 8 6 4.2916 0.0000 -0.0009 9 6 3.5917 -1.2048 0.0049 10 6 4.3253 -2.4872 0.0101 11 8 3.7138 -3.5368 0.0157 12 8 5.6724 -2.4926 0.0097 13 6 6.3264 -3.7890 0.0156 14 6 7.8440 -3.5945 0.0136 15 6 8.2573 -2.8205 -1.2397 16 6 8.2591 -2.8082 1.2587 17 6 8.5332 -4.9605 0.0191 18 6 10.0280 -4.7690 0.0178 19 1 10.4447 -3.7726 0.0138 20 6 10.8635 -5.8658 0.0227 21 7 10.3560 -7.0790 0.0290 22 14 12.7164 -5.6284 0.0203 23 1 13.0294 -4.1768 0.0135 24 1 13.2970 -6.2538 1.2355 25 1 13.2955 -6.2658 -1.1895 26 6 2.1941 -1.1974 0.0053 27 1 -0.3632 0.0046 1.0277 28 1 -0.3633 0.8877 -0.5177 29 1 -0.3634 -0.8923 -0.5098 30 1 1.6506 2.1309 0.0004 31 1 6.1078 3.3562 -0.0171 32 1 5.3716 -0.0001 -0.0017 33 1 6.0317 -4.3405 0.9083 34 1 6.0310 -4.3490 -0.8716 35 1 7.7663 -1.8473 -1.2443 36 1 9.3385 -2.6823 -1.2414 37 1 7.9616 -3.3807 -2.1269 38 1 7.9646 -3.3596 2.1515 39 1 9.3403 -2.6700 1.2574 40 1 7.7682 -1.8350 1.2542 41 1 8.2388 -5.5124 0.9119 42 1 8.2374 -5.5203 -0.8681 43 1 10.9438 -7.8506 0.0321 44 1 1.6503 -2.1305 0.0102 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607590127.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:27 Heat of formation + Delta-G solvation = -176.388995 kcal Electronic energy + Delta-G solvation = -26404.157766 eV Core-core repulsion = 22478.726010 eV Total energy + Delta-G solvation = -3925.431756 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.97279 -40.26510 -38.98291 -37.17303 -36.41773 -35.44323 -33.52019 -32.36144 -31.92640 -27.70812 -27.27118 -26.54960 -26.42511 -25.23973 -24.17394 -22.81045 -21.41286 -20.44372 -18.42532 -18.31428 -17.74837 -17.18679 -16.42153 -16.31973 -16.22176 -15.94219 -15.89038 -15.44994 -14.55127 -14.23566 -14.09433 -13.71902 -13.63549 -13.42850 -13.11967 -12.68064 -12.61389 -12.44091 -12.25801 -12.08801 -12.05625 -12.00828 -11.86272 -11.29027 -11.04528 -10.99505 -10.83012 -10.62461 -10.59783 -10.34668 -10.34180 -10.20360 -9.77039 -9.56925 -9.26482 -9.24347 -8.95464 -8.38538 -6.02517 -4.03572 0.12290 0.52149 1.94278 2.57816 2.60248 2.73218 3.29588 3.37700 3.38789 3.40706 4.18170 4.39487 4.46063 4.51428 4.66540 4.70833 4.85456 5.10441 5.20378 5.28294 5.32263 5.33315 5.45785 5.48405 5.61743 5.66749 5.79151 5.85693 5.91293 6.03470 6.11863 6.16750 6.24396 6.35415 6.49705 6.57102 6.69530 6.74928 7.09698 7.09784 7.11873 7.52387 7.59109 7.70531 7.81930 7.96222 8.37818 9.01021 9.59709 11.09190 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.018533 B = 0.002734 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.494606 B =10239.719391 C =11548.548517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.109 4.109 3 C -0.026 4.026 4 C -0.139 4.139 5 C 0.532 3.468 6 O -0.516 6.516 7 O -0.506 6.506 8 C -0.009 4.009 9 C -0.126 4.126 10 C 0.503 3.497 11 O -0.507 6.507 12 O -0.344 6.344 13 C 0.080 3.920 14 C -0.058 4.058 15 C -0.126 4.126 16 C -0.126 4.126 17 C 0.034 3.966 18 C -0.509 4.509 19 H 0.062 0.938 20 C 0.055 3.945 21 N -0.895 5.895 22 Si 0.890 3.110 23 H -0.272 1.272 24 H -0.285 1.285 25 H -0.285 1.285 26 C -0.022 4.022 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.144 0.856 31 H 0.417 0.583 32 H 0.158 0.842 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.039 0.961 36 H 0.066 0.934 37 H 0.043 0.957 38 H 0.043 0.957 39 H 0.066 0.934 40 H 0.039 0.961 41 H 0.018 0.982 42 H 0.019 0.981 43 H 0.260 0.740 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.111 17.637 -0.052 24.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.109 4.109 3 C -0.044 4.044 4 C -0.140 4.140 5 C 0.377 3.623 6 O -0.406 6.406 7 O -0.317 6.317 8 C -0.027 4.027 9 C -0.127 4.127 10 C 0.348 3.652 11 O -0.396 6.396 12 O -0.259 6.259 13 C 0.007 3.993 14 C -0.058 4.058 15 C -0.183 4.183 16 C -0.183 4.183 17 C -0.003 4.003 18 C -0.547 4.547 19 H 0.080 0.920 20 C -0.145 4.145 21 N -0.535 5.535 22 Si 0.718 3.282 23 H -0.197 1.197 24 H -0.211 1.211 25 H -0.211 1.211 26 C -0.040 4.040 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.162 0.838 31 H 0.277 0.723 32 H 0.175 0.825 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.058 0.942 36 H 0.085 0.915 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.085 0.915 40 H 0.058 0.942 41 H 0.037 0.963 42 H 0.037 0.963 43 H 0.069 0.931 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -17.539 17.014 -0.050 24.435 hybrid contribution 1.378 0.290 0.005 1.408 sum -16.161 17.304 -0.045 23.677 Atomic orbital electron populations 1.20810 0.89529 1.03570 1.03065 1.19795 0.97087 0.91821 1.02194 1.21386 0.92059 0.98959 0.92036 1.18968 0.93330 0.90714 1.11004 1.20721 0.80641 0.89067 0.71899 1.90891 1.69346 1.33770 1.46566 1.84590 1.20696 1.41031 1.85408 1.21881 1.01810 0.89847 0.89145 1.19198 0.93376 0.91346 1.08804 1.20944 0.82122 0.88814 0.73364 1.90837 1.69492 1.33511 1.45804 1.86529 1.18914 1.37634 1.82870 1.23582 0.93531 0.80047 1.02135 1.20824 0.88649 1.00216 0.96160 1.21721 1.02112 0.98060 0.96454 1.21718 1.02108 0.98011 0.96508 1.19138 0.95085 0.88554 0.97500 1.21185 0.90741 0.92586 1.50160 0.91996 1.25016 0.98717 0.95311 0.95503 1.69974 1.34879 0.97672 1.50963 0.86562 0.85844 0.78227 0.77534 1.19704 1.21116 1.21109 1.21495 0.92295 0.99076 0.91167 0.90557 0.90920 0.90789 0.83838 0.72341 0.82463 0.91393 0.91396 0.94164 0.91512 0.93754 0.93754 0.91515 0.94160 0.96318 0.96312 0.93063 0.83612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.59 10.00 36.01 0.36 -0.23 16 2 C -0.11 -0.86 5.87 -104.74 -0.61 -1.48 16 3 C -0.03 -0.22 9.24 -39.08 -0.36 -0.58 16 4 C -0.14 -1.37 5.87 -105.04 -0.62 -1.98 16 5 C 0.53 5.29 8.27 34.62 0.29 5.58 16 6 O -0.52 -6.20 17.12 -19.24 -0.33 -6.53 16 7 O -0.51 -3.98 12.67 -40.52 -0.51 -4.49 16 8 C -0.01 -0.09 9.18 -38.75 -0.36 -0.45 16 9 C -0.13 -1.48 5.87 -105.04 -0.62 -2.10 16 10 C 0.50 7.56 7.90 34.61 0.27 7.83 16 11 O -0.51 -8.78 16.13 -19.25 -0.31 -9.09 16 12 O -0.34 -5.47 8.12 -40.52 -0.33 -5.80 16 13 C 0.08 1.44 4.33 37.16 0.16 1.60 16 14 C -0.06 -1.15 0.61 -154.51 -0.09 -1.24 16 15 C -0.13 -2.33 8.08 37.16 0.30 -2.03 16 16 C -0.13 -2.33 8.08 37.15 0.30 -2.03 16 17 C 0.03 0.84 4.04 -27.88 -0.11 0.73 16 18 C -0.51 -13.49 7.65 -34.44 -0.26 -13.76 16 19 H 0.06 1.59 5.68 -52.49 -0.30 1.29 16 20 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 21 N -0.90 -26.29 13.29 55.43 0.74 -25.55 16 22 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 23 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 26 C -0.02 -0.22 9.24 -39.08 -0.36 -0.58 16 27 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 29 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 30 H 0.14 1.05 7.64 -52.49 -0.40 0.65 16 31 H 0.42 1.39 9.11 45.56 0.42 1.80 16 32 H 0.16 1.68 7.15 -52.49 -0.38 1.30 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.04 0.65 7.68 -51.93 -0.40 0.25 16 36 H 0.07 1.30 6.62 -51.93 -0.34 0.96 16 37 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 1.30 6.62 -51.93 -0.34 0.95 16 40 H 0.04 0.65 7.68 -51.93 -0.40 0.25 16 41 H 0.02 0.49 8.14 -51.92 -0.42 0.07 16 42 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 44 H 0.15 1.34 7.64 -52.49 -0.40 0.94 16 LS Contribution 375.13 15.07 5.65 5.65 Total: -1.00 -32.62 375.13 -7.40 -40.02 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -5.48 Total: -1.05 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: -1.81 Total: -9.27 kcal Atomic # 7 Polarization: -26.29 SS G_CDS: 0.74 Total: -25.55 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -1.48 Total: -25.91 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.62 -7.40 -40.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607590127.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.368 kcal (2) G-P(sol) polarization free energy of solvation -32.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds