Wall clock time and date at job start Tue Mar 31 2020 12:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38091 * 119.84706 * 2 1 4 4 C 1.39718 * 120.14936 * 180.30195 * 3 2 1 5 5 C 1.47743 * 120.07608 * 179.71653 * 4 3 2 6 6 O 1.21468 * 120.00440 * 359.72593 * 5 4 3 7 7 O 1.34711 * 120.00226 * 179.72605 * 5 4 3 8 8 C 1.39377 * 119.85054 * 359.44117 * 4 3 2 9 9 C 1.39335 * 119.69161 * 0.27951 * 8 4 3 10 10 C 1.47740 * 120.07403 * 179.97438 * 9 8 4 11 11 O 1.21474 * 120.00256 * 179.97438 * 10 9 8 12 12 O 1.34710 * 120.00278 * 0.02562 * 10 9 8 13 13 C 1.45199 * 117.00163 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.46801 * 179.97438 * 13 12 10 15 15 C 1.52995 * 109.47235 * 299.99475 * 14 13 12 16 16 C 1.52994 * 109.47228 * 59.99960 * 14 13 12 17 17 C 1.53004 * 109.46864 * 180.02562 * 14 13 12 18 18 C 1.50703 * 109.47196 * 180.02562 * 17 14 13 19 19 H 1.07999 * 119.99460 * 0.02562 * 18 17 14 20 20 C 1.37877 * 120.00010 * 179.97438 * 18 17 14 21 21 N 1.31513 * 120.00097 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99920 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47192 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46977 * 119.99833 * 22 20 18 25 25 H 1.48499 * 109.47041 * 240.00330 * 22 20 18 26 26 C 1.38051 * 119.84571 * 179.74413 * 2 1 3 27 27 H 1.08998 * 109.46675 * 270.25536 * 1 2 3 28 28 H 1.08995 * 109.47201 * 30.25200 * 1 2 3 29 29 H 1.09001 * 109.47331 * 150.25856 * 1 2 3 30 30 H 1.08002 * 119.92299 * 0.02562 * 3 2 1 31 31 H 0.96700 * 117.00324 * 180.02562 * 7 5 4 32 32 H 1.07997 * 120.15752 * 180.25160 * 8 4 3 33 33 H 1.08994 * 109.47066 * 299.99252 * 13 12 10 34 34 H 1.08997 * 109.47160 * 59.99395 * 13 12 10 35 35 H 1.09004 * 109.47294 * 60.00164 * 15 14 13 36 36 H 1.08994 * 109.47285 * 180.02562 * 15 14 13 37 37 H 1.09005 * 109.47618 * 300.00564 * 15 14 13 38 38 H 1.08994 * 109.47344 * 59.99910 * 16 14 13 39 39 H 1.09003 * 109.46982 * 179.97438 * 16 14 13 40 40 H 1.08996 * 109.47325 * 299.99474 * 16 14 13 41 41 H 1.09008 * 109.47034 * 299.99747 * 17 14 13 42 42 H 1.08997 * 109.47201 * 59.99736 * 17 14 13 43 43 H 0.97000 * 120.00120 * 179.97438 * 21 20 18 44 44 H 1.08000 * 119.92450 * 359.95673 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1943 1.1977 0.0000 4 6 3.5915 1.2051 -0.0064 5 6 4.3251 2.4875 -0.0127 6 8 3.7137 3.5371 -0.0174 7 8 5.6722 2.4929 -0.0132 8 6 4.2916 0.0000 -0.0009 9 6 3.5917 -1.2048 0.0049 10 6 4.3253 -2.4872 0.0101 11 8 3.7138 -3.5368 0.0157 12 8 5.6724 -2.4926 0.0097 13 6 6.3264 -3.7890 0.0156 14 6 7.8440 -3.5945 0.0136 15 6 8.2573 -2.8205 -1.2397 16 6 8.2591 -2.8082 1.2587 17 6 8.5332 -4.9605 0.0191 18 6 10.0280 -4.7690 0.0178 19 1 10.4447 -3.7726 0.0138 20 6 10.8635 -5.8658 0.0227 21 7 10.3560 -7.0790 0.0290 22 14 12.7164 -5.6284 0.0203 23 1 13.0294 -4.1768 0.0135 24 1 13.2970 -6.2538 1.2355 25 1 13.2955 -6.2658 -1.1895 26 6 2.1941 -1.1974 0.0053 27 1 -0.3632 0.0046 1.0277 28 1 -0.3633 0.8877 -0.5177 29 1 -0.3634 -0.8923 -0.5098 30 1 1.6506 2.1309 0.0004 31 1 6.1078 3.3562 -0.0171 32 1 5.3716 -0.0001 -0.0017 33 1 6.0317 -4.3405 0.9083 34 1 6.0310 -4.3490 -0.8716 35 1 7.7663 -1.8473 -1.2443 36 1 9.3385 -2.6823 -1.2414 37 1 7.9616 -3.3807 -2.1269 38 1 7.9646 -3.3596 2.1515 39 1 9.3403 -2.6700 1.2574 40 1 7.7682 -1.8350 1.2542 41 1 8.2388 -5.5124 0.9119 42 1 8.2374 -5.5203 -0.8681 43 1 10.9438 -7.8506 0.0321 44 1 1.6503 -2.1305 0.0102 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607590127.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:26 Heat of formation + Delta-G solvation = -194.221366 kcal Electronic energy + Delta-G solvation = -26404.931036 eV Core-core repulsion = 22478.726010 eV Total energy + Delta-G solvation = -3926.205026 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.90014 -41.27362 -39.84657 -38.64022 -37.13057 -36.91917 -34.45126 -34.13856 -32.76579 -29.33872 -28.30223 -27.94264 -27.82192 -26.12820 -25.39423 -24.47447 -22.13494 -21.49814 -19.94789 -19.12365 -18.73678 -18.40885 -18.15267 -17.51014 -17.14877 -17.00597 -16.70495 -16.52576 -16.20683 -15.35639 -15.28468 -14.79013 -14.66851 -14.59574 -14.19455 -14.02760 -14.01971 -13.78038 -13.16350 -13.08848 -12.95456 -12.80198 -12.73037 -12.70104 -12.67957 -12.57934 -12.31290 -12.25856 -11.97759 -11.86293 -11.83727 -11.66462 -11.37181 -11.03348 -10.88201 -10.52550 -10.37435 -9.95445 -8.15081 -6.22435 -0.66775 -0.27427 1.11562 1.42403 1.43259 1.51336 1.56248 1.61623 1.97929 2.44674 2.57456 3.19886 3.33676 3.60753 3.79278 3.91321 3.94424 3.96127 4.02863 4.12357 4.23080 4.32705 4.51471 4.60441 4.66089 4.72921 4.74823 4.86284 4.91779 5.03607 5.06739 5.14120 5.15192 5.19664 5.28099 5.38274 5.44068 5.47692 5.51737 5.52902 5.54841 5.57253 5.75841 5.88574 6.28930 6.59184 6.91701 6.92613 7.45220 8.97806 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.018533 B = 0.002734 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.494606 B =10239.719391 C =11548.548517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.098 4.098 3 C -0.018 4.018 4 C -0.146 4.146 5 C 0.538 3.462 6 O -0.540 6.540 7 O -0.504 6.504 8 C -0.007 4.007 9 C -0.142 4.142 10 C 0.504 3.496 11 O -0.536 6.536 12 O -0.339 6.339 13 C 0.090 3.910 14 C -0.054 4.054 15 C -0.120 4.120 16 C -0.120 4.120 17 C 0.039 3.961 18 C -0.512 4.512 19 H 0.072 0.928 20 C -0.004 4.004 21 N -0.938 5.938 22 Si 0.959 3.041 23 H -0.258 1.258 24 H -0.284 1.284 25 H -0.284 1.284 26 C -0.024 4.024 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.160 0.840 31 H 0.436 0.564 32 H 0.157 0.843 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.056 0.944 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.056 0.944 40 H 0.067 0.933 41 H -0.010 1.010 42 H -0.010 1.010 43 H 0.260 0.740 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.692 20.307 -0.060 26.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.098 4.098 3 C -0.036 4.036 4 C -0.147 4.147 5 C 0.384 3.616 6 O -0.432 6.432 7 O -0.318 6.318 8 C -0.026 4.026 9 C -0.143 4.143 10 C 0.351 3.649 11 O -0.427 6.427 12 O -0.254 6.254 13 C 0.016 3.984 14 C -0.054 4.054 15 C -0.177 4.177 16 C -0.177 4.177 17 C 0.002 3.998 18 C -0.550 4.550 19 H 0.090 0.910 20 C -0.201 4.201 21 N -0.579 5.579 22 Si 0.784 3.216 23 H -0.181 1.181 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.042 4.042 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.099 0.901 30 H 0.177 0.823 31 H 0.299 0.701 32 H 0.174 0.826 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.009 0.991 42 H 0.009 0.991 43 H 0.069 0.931 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -18.104 19.721 -0.058 26.771 hybrid contribution 1.463 -0.485 0.008 1.541 sum -16.641 19.235 -0.050 25.435 Atomic orbital electron populations 1.20914 0.87234 1.04714 1.04153 1.20061 0.98553 0.90741 1.00458 1.21657 0.91685 0.99812 0.90484 1.19068 0.93997 0.90391 1.11267 1.20676 0.81110 0.88618 0.71234 1.90885 1.69928 1.34447 1.47938 1.84556 1.19763 1.42738 1.84767 1.21807 1.01782 0.89735 0.89232 1.19046 0.93955 0.89886 1.11440 1.21527 0.81448 0.89802 0.72164 1.90823 1.69696 1.34847 1.47380 1.86505 1.19845 1.35922 1.83175 1.23199 0.92763 0.80999 1.01442 1.20629 0.89375 0.97671 0.97767 1.21652 1.01607 0.99092 0.95349 1.21649 1.01602 0.99033 0.95412 1.18996 0.95123 0.90909 0.94748 1.21566 0.91703 0.92936 1.48804 0.90973 1.25925 1.03700 0.95049 0.95393 1.70115 1.36622 0.98610 1.52555 0.85482 0.79923 0.78841 0.77333 1.18118 1.20977 1.20963 1.21631 0.91523 1.00105 0.90916 0.89380 0.89394 0.90111 0.82277 0.70118 0.82564 0.92189 0.92194 0.91395 0.92523 0.94303 0.94302 0.92526 0.91390 0.99132 0.99120 0.93094 0.83341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 10.00 71.24 0.71 -0.11 16 2 C -0.10 -1.31 5.87 -19.94 -0.12 -1.43 16 3 C -0.02 -0.26 9.24 22.59 0.21 -0.06 16 4 C -0.15 -2.58 5.87 -20.13 -0.12 -2.69 16 5 C 0.54 9.62 8.27 70.34 0.58 10.20 16 6 O -0.54 -11.95 17.12 19.94 0.34 -11.61 16 7 O -0.50 -6.81 12.67 -56.21 -0.71 -7.52 16 8 C -0.01 -0.14 9.18 22.81 0.21 0.07 16 9 C -0.14 -3.20 5.87 -20.13 -0.12 -3.32 16 10 C 0.50 15.00 7.90 70.33 0.56 15.55 16 11 O -0.54 -18.78 16.13 19.92 0.32 -18.46 16 12 O -0.34 -10.58 8.12 -56.20 -0.46 -11.04 16 13 C 0.09 3.27 4.33 71.98 0.31 3.58 16 14 C -0.05 -2.14 0.61 -52.18 -0.03 -2.17 16 15 C -0.12 -4.31 8.08 71.98 0.58 -3.73 16 16 C -0.12 -4.31 8.08 71.98 0.58 -3.73 16 17 C 0.04 2.00 4.04 29.85 0.12 2.12 16 18 C -0.51 -27.47 7.65 25.60 0.20 -27.28 16 19 H 0.07 3.66 5.68 -2.91 -0.02 3.64 16 20 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 21 N -0.94 -56.56 13.29 21.45 0.28 -56.27 16 22 Si 0.96 43.48 29.54 68.60 2.03 45.50 16 23 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 24 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 25 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 26 C -0.02 -0.43 9.24 22.59 0.21 -0.22 16 27 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.09 0.41 8.08 -2.39 -0.02 0.39 16 29 H 0.08 0.52 8.08 -2.39 -0.02 0.50 16 30 H 0.16 1.84 7.64 -2.91 -0.02 1.81 16 31 H 0.44 1.89 9.11 -74.06 -0.67 1.22 16 32 H 0.16 3.07 7.15 -2.91 -0.02 3.04 16 33 H 0.06 2.26 8.14 -2.39 -0.02 2.25 16 34 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.07 2.05 7.68 -2.39 -0.02 2.04 16 36 H 0.06 2.14 6.62 -2.39 -0.02 2.12 16 37 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 38 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.06 2.14 6.62 -2.39 -0.02 2.12 16 40 H 0.07 2.06 7.68 -2.39 -0.02 2.04 16 41 H -0.01 -0.54 8.14 -2.38 -0.02 -0.56 16 42 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 43 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 44 H 0.15 2.57 7.64 -2.91 -0.02 2.55 16 Total: -1.00 -70.96 375.13 6.50 -64.46 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: 0.35 Total: 7.89 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: 4.34 Total: -12.95 kcal Atomic # 7 Polarization: -56.56 SS G_CDS: 0.28 Total: -56.27 kcal Atomic # 8 Polarization: -48.12 SS G_CDS: -0.51 Total: -48.63 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Total: -70.96 6.50 -64.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607590127.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.764 kcal (2) G-P(sol) polarization free energy of solvation -70.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds