Wall clock time and date at job start Tue Mar 31 2020 12:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86801 * 120.00226 * 2 1 4 4 H 1.48503 * 109.46648 * 269.99834 * 3 2 1 5 5 H 1.48494 * 109.46972 * 29.99750 * 3 2 1 6 6 H 1.48495 * 109.46962 * 150.00050 * 3 2 1 7 7 C 1.40026 * 119.99524 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99642 * 179.97438 * 7 2 1 9 9 C 1.41316 * 120.00541 * 0.02562 * 7 2 1 10 10 C 1.40590 * 119.78748 * 179.97438 * 9 7 2 11 11 C 1.38340 * 119.14850 * 179.70129 * 10 9 7 12 12 C 1.38640 * 118.68000 * 0.57623 * 11 10 9 13 13 C 1.39756 * 119.48984 * 359.43692 * 12 11 10 14 14 N 1.38826 * 119.58449 * 180.29814 * 13 12 11 15 15 C 1.46501 * 119.99868 * 0.02562 * 14 13 12 16 16 H 1.08994 * 109.53692 * 35.15342 * 15 14 13 17 17 C 1.53171 * 109.53169 * 274.99527 * 15 14 13 18 18 C 1.53090 * 109.11814 * 183.15308 * 17 15 14 19 19 O 1.42857 * 109.43835 * 57.62867 * 18 17 15 20 20 C 1.43265 * 114.01457 * 298.53918 * 19 18 17 21 21 C 1.53198 * 109.03700 * 180.51570 * 20 19 18 22 22 C 1.55084 * 109.00767 * 90.07080 * 21 20 19 23 23 S 1.83972 * 100.87393 * 41.70139 * 22 21 20 24 24 C 1.53946 * 108.66570 * 303.10433 * 20 19 18 25 25 C 1.53136 * 109.53418 * 155.39735 * 15 14 13 26 26 N 1.31983 * 120.83138 * 0.27990 * 13 12 11 27 27 H 0.97003 * 119.99775 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.42360 * 0.02562 * 10 9 7 29 29 H 1.08002 * 120.66181 * 180.32001 * 11 10 9 30 30 H 1.08002 * 120.25839 * 179.71706 * 12 11 10 31 31 H 0.97008 * 119.99817 * 180.02562 * 14 13 12 32 32 H 1.08998 * 109.53152 * 303.04996 * 17 15 14 33 33 H 1.08997 * 109.52710 * 63.19259 * 17 15 14 34 34 H 1.09004 * 109.47693 * 177.61017 * 18 17 15 35 35 H 1.08999 * 109.48041 * 297.63588 * 18 17 15 36 36 H 1.09000 * 109.59184 * 210.01875 * 21 20 19 37 37 H 1.08999 * 109.59319 * 330.12069 * 21 20 19 38 38 H 1.09001 * 111.13900 * 283.79887 * 22 21 20 39 39 H 1.09005 * 111.17859 * 159.62294 * 22 21 20 40 40 H 1.08995 * 110.31818 * 1.23008 * 24 20 19 41 41 H 1.08998 * 110.32359 * 123.33064 * 24 20 19 42 42 H 1.08998 * 109.52858 * 296.97600 * 25 15 14 43 43 H 1.08995 * 109.53256 * 57.18950 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4890 2.0463 -1.4001 5 1 1.4390 2.6526 0.7000 6 1 3.5390 1.4401 0.7000 7 6 2.0075 -1.2127 0.0005 8 1 3.0875 -1.2127 0.0001 9 6 1.3009 -2.4366 0.0005 10 6 2.0084 -3.6515 0.0005 11 6 1.3034 -4.8418 0.0068 12 6 -0.0822 -4.7944 0.0007 13 6 -0.7282 -3.5552 0.0004 14 7 -2.1156 -3.5055 0.0006 15 6 -2.8930 -4.7472 0.0016 16 1 -2.3745 -5.5014 0.5936 17 6 -3.0584 -5.2491 -1.4360 18 6 -3.9376 -6.5024 -1.4316 19 8 -5.1982 -6.1966 -0.8331 20 6 -5.1078 -5.7720 0.5322 21 6 -6.5171 -5.4882 1.0616 22 6 -7.0960 -6.7878 1.6788 23 16 -5.6247 -7.4310 2.5767 24 6 -4.3915 -6.8676 1.3425 25 6 -4.2769 -4.4844 0.6025 26 7 -0.0360 -2.4314 0.0003 27 1 -0.4850 0.8401 -0.0004 28 1 3.0884 -3.6554 0.0010 29 1 1.8220 -5.7891 0.0122 30 1 -0.6579 -5.7082 0.0008 31 1 -2.5703 -2.6485 0.0000 32 1 -3.5309 -4.4746 -2.0403 33 1 -2.0805 -5.4903 -1.8525 34 1 -4.0942 -6.8401 -2.4561 35 1 -3.4455 -7.2896 -0.8604 36 1 -6.4715 -4.7103 1.8238 37 1 -7.1553 -5.1565 0.2427 38 1 -7.4174 -7.4824 0.9026 39 1 -7.9116 -6.5674 2.3677 40 1 -4.1036 -7.6928 0.6912 41 1 -3.5143 -6.4565 1.8420 42 1 -4.1700 -4.1761 1.6425 43 1 -4.7760 -3.6973 0.0374 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647144283.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:39 Heat of formation + Delta-G solvation = -6.064519 kcal Electronic energy + Delta-G solvation = -24989.304081 eV Core-core repulsion = 21546.303770 eV Total energy + Delta-G solvation = -3443.000310 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.41605 -38.23545 -35.66447 -34.76077 -33.44893 -31.66481 -30.36511 -30.16448 -28.87938 -27.71998 -25.42079 -24.54315 -23.80537 -21.66239 -21.40335 -20.17609 -19.39516 -17.49317 -17.15154 -16.67322 -16.33705 -15.64088 -15.27828 -15.04592 -14.85877 -14.63026 -14.22711 -13.96597 -13.66001 -13.25631 -13.05660 -12.97919 -12.75966 -12.40158 -12.19458 -12.05542 -11.88470 -11.74587 -11.51609 -11.45112 -11.24371 -11.00478 -10.88665 -10.66281 -10.46213 -10.31754 -10.26123 -9.96320 -9.59761 -9.51105 -8.92772 -7.95044 -7.89863 -7.53983 -6.56648 -6.35439 -4.50052 1.61906 2.08804 2.85164 3.09694 3.12909 3.20646 3.27324 3.48446 3.91383 3.96749 4.18222 4.45121 4.54671 4.78180 4.81277 4.84670 4.88848 5.02914 5.14070 5.19191 5.25243 5.30610 5.45573 5.47785 5.60357 5.65785 5.70286 5.83217 5.98072 6.06048 6.10908 6.15124 6.32815 6.57248 6.81633 6.86736 6.91138 7.01764 7.22391 7.56182 7.77679 7.88754 8.13629 8.32964 8.63972 8.77492 9.08869 10.21696 10.37573 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.021268 B = 0.003051 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.214971 B = 9176.384405 C = 9579.140945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.715 5.715 2 C 0.071 3.929 3 Si 0.905 3.095 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.434 4.434 8 H 0.083 0.917 9 C 0.292 3.708 10 C -0.316 4.316 11 C -0.032 4.032 12 C -0.369 4.369 13 C 0.413 3.587 14 N -0.732 5.732 15 C 0.167 3.833 16 H 0.077 0.923 17 C -0.172 4.172 18 C 0.058 3.942 19 O -0.371 6.371 20 C 0.122 3.878 21 C -0.112 4.112 22 C -0.066 4.066 23 S -0.293 6.293 24 C -0.100 4.100 25 C -0.146 4.146 26 N -0.531 5.531 27 H 0.269 0.731 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.395 0.605 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.054 0.946 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.108 0.892 40 H 0.101 0.899 41 H 0.110 0.890 42 H 0.083 0.917 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.267 -9.480 0.259 16.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.337 5.337 2 C -0.154 4.154 3 Si 0.729 3.271 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.466 4.466 8 H 0.101 0.899 9 C 0.166 3.834 10 C -0.339 4.339 11 C -0.056 4.056 12 C -0.395 4.395 13 C 0.173 3.827 14 N -0.367 5.367 15 C 0.059 3.941 16 H 0.095 0.905 17 C -0.211 4.211 18 C -0.019 4.019 19 O -0.291 6.291 20 C 0.081 3.919 21 C -0.151 4.151 22 C -0.214 4.214 23 S -0.067 6.067 24 C -0.249 4.249 25 C -0.185 4.185 26 N -0.253 5.253 27 H 0.081 0.919 28 H 0.113 0.887 29 H 0.110 0.890 30 H 0.107 0.893 31 H 0.230 0.770 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.114 0.886 35 H 0.072 0.928 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.126 0.874 40 H 0.120 0.880 41 H 0.128 0.872 42 H 0.102 0.898 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -13.927 -9.342 1.235 16.815 hybrid contribution 0.954 0.757 -1.030 1.595 sum -12.973 -8.586 0.205 15.558 Atomic orbital electron populations 1.70150 1.07145 1.27338 1.29062 1.26049 0.94867 1.00924 0.93544 0.86374 0.80526 0.81022 0.79143 1.19503 1.20230 1.18586 1.19593 0.94174 0.89406 1.43383 0.89896 1.18197 0.86894 0.91839 0.86512 1.21538 0.98432 0.93481 1.20441 1.20592 0.93460 0.96355 0.95202 1.20591 0.94544 0.95385 1.29014 1.18505 0.84199 0.90267 0.89752 1.44156 1.02696 1.06246 1.83629 1.20648 0.90248 0.88411 0.94788 0.90472 1.22760 1.01111 0.98187 0.99048 1.22678 0.84420 0.96412 0.98400 1.88057 1.29782 1.86846 1.24369 1.22196 0.94669 0.92303 0.82729 1.22345 0.93661 0.97527 1.01551 1.24327 0.97211 0.98647 1.01249 1.87866 1.04940 1.79448 1.34408 1.24886 1.00038 1.01329 0.98600 1.22579 0.95702 0.97246 1.02986 1.68212 1.07678 1.24326 1.25040 0.91949 0.88730 0.88998 0.89298 0.76983 0.90895 0.89935 0.88554 0.92757 0.88750 0.88682 0.88815 0.87407 0.88039 0.87156 0.89798 0.90077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.84 11.46 55.55 0.64 -18.21 16 2 C 0.07 1.81 5.50 -17.34 -0.10 1.72 16 3 Si 0.91 18.63 29.56 -169.99 -5.02 13.61 16 4 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.18 16 6 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 7 C -0.43 -11.69 9.14 -37.74 -0.34 -12.04 16 8 H 0.08 2.10 7.85 -52.48 -0.41 1.69 16 9 C 0.29 8.08 6.55 -85.00 -0.56 7.53 16 10 C -0.32 -7.94 9.83 -38.66 -0.38 -8.32 16 11 C -0.03 -0.72 10.15 -39.40 -0.40 -1.12 16 12 C -0.37 -8.26 8.87 -38.87 -0.34 -8.60 16 13 C 0.41 9.78 7.63 -155.31 -1.18 8.59 16 14 N -0.73 -14.01 5.25 -53.76 -0.28 -14.30 16 15 C 0.17 2.44 1.93 -67.77 -0.13 2.31 16 16 H 0.08 1.18 4.91 -51.93 -0.25 0.93 16 17 C -0.17 -2.33 5.64 -26.60 -0.15 -2.48 16 18 C 0.06 0.64 6.48 37.20 0.24 0.88 16 19 O -0.37 -4.31 10.15 -35.23 -0.36 -4.67 16 20 C 0.12 1.31 1.01 -89.82 -0.09 1.22 16 21 C -0.11 -0.99 5.50 -25.53 -0.14 -1.13 16 22 C -0.07 -0.56 7.52 38.26 0.29 -0.27 16 23 S -0.29 -3.30 23.22 -107.50 -2.50 -5.80 16 24 C -0.10 -1.11 5.54 37.65 0.21 -0.90 16 25 C -0.15 -1.76 4.01 -26.45 -0.11 -1.87 16 26 N -0.53 -14.46 7.89 -10.33 -0.08 -14.54 16 27 H 0.27 6.45 8.29 -40.82 -0.34 6.11 16 28 H 0.09 2.22 8.06 -52.49 -0.42 1.79 16 29 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 30 H 0.09 1.75 6.00 -52.49 -0.32 1.43 16 31 H 0.40 7.66 8.72 -40.82 -0.36 7.30 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.08 1.25 7.62 -51.93 -0.40 0.85 16 34 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.05 0.56 6.05 -51.93 -0.31 0.25 16 36 H 0.09 0.78 7.85 -51.93 -0.41 0.37 16 37 H 0.09 0.78 8.06 -51.93 -0.42 0.36 16 38 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.10 1.09 6.04 -51.93 -0.31 0.78 16 41 H 0.11 1.30 6.47 -51.93 -0.34 0.96 16 42 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 346.96 15.07 5.23 5.23 Total: -1.00 -29.64 346.96 -11.60 -41.24 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -6.04 Total: 11.92 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: -3.19 Total: -14.49 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: 0.27 Total: -47.05 kcal Atomic # 8 Polarization: -4.31 SS G_CDS: -0.36 Total: -4.67 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.02 Total: 13.61 kcal Atomic # 16 Polarization: -3.30 SS G_CDS: -2.50 Total: -5.80 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.64 -11.60 -41.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647144283.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.179 kcal (2) G-P(sol) polarization free energy of solvation -29.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds