Wall clock time and date at job start Tue Mar 31 2020 12:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86801 * 120.00226 * 2 1 4 4 H 1.48503 * 109.46648 * 269.99834 * 3 2 1 5 5 H 1.48494 * 109.46972 * 29.99750 * 3 2 1 6 6 H 1.48495 * 109.46962 * 150.00050 * 3 2 1 7 7 C 1.40026 * 119.99524 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99642 * 179.97438 * 7 2 1 9 9 C 1.41316 * 120.00541 * 0.02562 * 7 2 1 10 10 C 1.40590 * 119.78748 * 179.97438 * 9 7 2 11 11 C 1.38340 * 119.14850 * 179.70129 * 10 9 7 12 12 C 1.38640 * 118.68000 * 0.57623 * 11 10 9 13 13 C 1.39756 * 119.48984 * 359.43692 * 12 11 10 14 14 N 1.38826 * 119.58449 * 180.29814 * 13 12 11 15 15 C 1.46501 * 119.99868 * 0.02562 * 14 13 12 16 16 H 1.08994 * 109.53692 * 35.15342 * 15 14 13 17 17 C 1.53171 * 109.53169 * 274.99527 * 15 14 13 18 18 C 1.53090 * 109.11814 * 183.15308 * 17 15 14 19 19 O 1.42857 * 109.43835 * 57.62867 * 18 17 15 20 20 C 1.43265 * 114.01457 * 298.53918 * 19 18 17 21 21 C 1.53198 * 109.03700 * 180.51570 * 20 19 18 22 22 C 1.55084 * 109.00767 * 90.07080 * 21 20 19 23 23 S 1.83972 * 100.87393 * 41.70139 * 22 21 20 24 24 C 1.53946 * 108.66570 * 303.10433 * 20 19 18 25 25 C 1.53136 * 109.53418 * 155.39735 * 15 14 13 26 26 N 1.31983 * 120.83138 * 0.27990 * 13 12 11 27 27 H 0.97003 * 119.99775 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.42360 * 0.02562 * 10 9 7 29 29 H 1.08002 * 120.66181 * 180.32001 * 11 10 9 30 30 H 1.08002 * 120.25839 * 179.71706 * 12 11 10 31 31 H 0.97008 * 119.99817 * 180.02562 * 14 13 12 32 32 H 1.08998 * 109.53152 * 303.04996 * 17 15 14 33 33 H 1.08997 * 109.52710 * 63.19259 * 17 15 14 34 34 H 1.09004 * 109.47693 * 177.61017 * 18 17 15 35 35 H 1.08999 * 109.48041 * 297.63588 * 18 17 15 36 36 H 1.09000 * 109.59184 * 210.01875 * 21 20 19 37 37 H 1.08999 * 109.59319 * 330.12069 * 21 20 19 38 38 H 1.09001 * 111.13900 * 283.79887 * 22 21 20 39 39 H 1.09005 * 111.17859 * 159.62294 * 22 21 20 40 40 H 1.08995 * 110.31818 * 1.23008 * 24 20 19 41 41 H 1.08998 * 110.32359 * 123.33064 * 24 20 19 42 42 H 1.08998 * 109.52858 * 296.97600 * 25 15 14 43 43 H 1.08995 * 109.53256 * 57.18950 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4890 2.0463 -1.4001 5 1 1.4390 2.6526 0.7000 6 1 3.5390 1.4401 0.7000 7 6 2.0075 -1.2127 0.0005 8 1 3.0875 -1.2127 0.0001 9 6 1.3009 -2.4366 0.0005 10 6 2.0084 -3.6515 0.0005 11 6 1.3034 -4.8418 0.0068 12 6 -0.0822 -4.7944 0.0007 13 6 -0.7282 -3.5552 0.0004 14 7 -2.1156 -3.5055 0.0006 15 6 -2.8930 -4.7472 0.0016 16 1 -2.3745 -5.5014 0.5936 17 6 -3.0584 -5.2491 -1.4360 18 6 -3.9376 -6.5024 -1.4316 19 8 -5.1982 -6.1966 -0.8331 20 6 -5.1078 -5.7720 0.5322 21 6 -6.5171 -5.4882 1.0616 22 6 -7.0960 -6.7878 1.6788 23 16 -5.6247 -7.4310 2.5767 24 6 -4.3915 -6.8676 1.3425 25 6 -4.2769 -4.4844 0.6025 26 7 -0.0360 -2.4314 0.0003 27 1 -0.4850 0.8401 -0.0004 28 1 3.0884 -3.6554 0.0010 29 1 1.8220 -5.7891 0.0122 30 1 -0.6579 -5.7082 0.0008 31 1 -2.5703 -2.6485 0.0000 32 1 -3.5309 -4.4746 -2.0403 33 1 -2.0805 -5.4903 -1.8525 34 1 -4.0942 -6.8401 -2.4561 35 1 -3.4455 -7.2896 -0.8604 36 1 -6.4715 -4.7103 1.8238 37 1 -7.1553 -5.1565 0.2427 38 1 -7.4174 -7.4824 0.9026 39 1 -7.9116 -6.5674 2.3677 40 1 -4.1036 -7.6928 0.6912 41 1 -3.5143 -6.4565 1.8420 42 1 -4.1700 -4.1761 1.6425 43 1 -4.7760 -3.6973 0.0374 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647144283.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:38 Heat of formation + Delta-G solvation = -22.507316 kcal Electronic energy + Delta-G solvation = -24990.017094 eV Core-core repulsion = 21546.303770 eV Total energy + Delta-G solvation = -3443.713324 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.43375 -39.99597 -37.10116 -35.59910 -35.26877 -33.15008 -32.09489 -31.13121 -30.35428 -28.91965 -27.28234 -25.49736 -24.84461 -23.36556 -22.82374 -21.62933 -20.41342 -19.28025 -18.26323 -17.94126 -17.45869 -16.78114 -16.68966 -16.44467 -16.08210 -15.84210 -15.69109 -15.17322 -15.04461 -14.66444 -14.33934 -14.13838 -13.90865 -13.83661 -13.67860 -13.01212 -12.95106 -12.93580 -12.75502 -12.65335 -12.55817 -12.43687 -12.40107 -12.16597 -11.97713 -11.74899 -11.41940 -11.21360 -11.11170 -10.64915 -10.53986 -9.84967 -9.45400 -8.77128 -8.31937 -8.23815 -6.48670 0.81131 1.05150 1.31195 1.33842 1.40989 1.53788 1.57988 2.24363 2.47730 2.67689 2.91540 3.32182 3.54286 3.63971 3.79544 3.95845 4.01912 4.06467 4.10228 4.10992 4.28363 4.30269 4.39213 4.48237 4.58729 4.66983 4.72311 4.76491 4.77645 4.84251 4.93492 4.94700 4.99630 5.04878 5.09786 5.13632 5.25206 5.37276 5.70722 5.95496 6.06527 6.11502 6.21709 6.54769 6.82404 6.92608 7.20819 8.33667 8.50265 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.021268 B = 0.003051 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.214971 B = 9176.384405 C = 9579.140945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.750 5.750 2 C 0.027 3.973 3 Si 0.985 3.015 4 H -0.264 1.264 5 H -0.268 1.268 6 H -0.258 1.258 7 C -0.472 4.472 8 H 0.085 0.915 9 C 0.260 3.740 10 C -0.345 4.345 11 C -0.030 4.030 12 C -0.366 4.366 13 C 0.398 3.602 14 N -0.727 5.727 15 C 0.164 3.836 16 H 0.074 0.926 17 C -0.164 4.164 18 C 0.063 3.937 19 O -0.374 6.374 20 C 0.127 3.873 21 C -0.111 4.111 22 C -0.051 4.051 23 S -0.334 6.334 24 C -0.095 4.095 25 C -0.138 4.138 26 N -0.565 5.565 27 H 0.276 0.724 28 H 0.100 0.900 29 H 0.128 0.872 30 H 0.117 0.883 31 H 0.392 0.608 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.115 0.885 35 H 0.065 0.935 36 H 0.101 0.899 37 H 0.107 0.893 38 H 0.101 0.899 39 H 0.129 0.871 40 H 0.105 0.895 41 H 0.099 0.901 42 H 0.081 0.919 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.690 -10.148 0.072 17.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.373 5.373 2 C -0.195 4.195 3 Si 0.805 3.195 4 H -0.189 1.189 5 H -0.193 1.193 6 H -0.181 1.181 7 C -0.504 4.504 8 H 0.103 0.897 9 C 0.133 3.867 10 C -0.368 4.368 11 C -0.054 4.054 12 C -0.391 4.391 13 C 0.157 3.843 14 N -0.361 5.361 15 C 0.058 3.942 16 H 0.092 0.908 17 C -0.204 4.204 18 C -0.014 4.014 19 O -0.293 6.293 20 C 0.085 3.915 21 C -0.150 4.150 22 C -0.198 4.198 23 S -0.109 6.109 24 C -0.243 4.243 25 C -0.177 4.177 26 N -0.288 5.288 27 H 0.086 0.914 28 H 0.119 0.881 29 H 0.145 0.855 30 H 0.135 0.865 31 H 0.226 0.774 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.133 0.867 35 H 0.083 0.917 36 H 0.119 0.881 37 H 0.126 0.874 38 H 0.119 0.881 39 H 0.147 0.853 40 H 0.124 0.876 41 H 0.118 0.882 42 H 0.100 0.900 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -15.390 -10.057 1.048 18.414 hybrid contribution 1.293 0.830 -0.974 1.820 sum -14.096 -9.227 0.074 16.848 Atomic orbital electron populations 1.70242 1.08708 1.28646 1.29664 1.26935 0.95752 1.04279 0.92543 0.85175 0.79015 0.75940 0.79327 1.18864 1.19259 1.18125 1.19936 0.94577 0.90562 1.45288 0.89685 1.18659 0.87698 0.93133 0.87242 1.21685 0.98950 0.93839 1.22292 1.21002 0.93821 0.97092 0.93522 1.20925 0.94803 0.96006 1.27384 1.18934 0.85876 0.90216 0.89230 1.44349 1.01363 1.07776 1.82579 1.20890 0.91005 0.86446 0.95874 0.90842 1.22658 1.00833 0.99282 0.97625 1.22708 0.83882 0.95055 0.99777 1.88070 1.29831 1.86748 1.24652 1.22249 0.95553 0.91140 0.82534 1.22367 0.92490 0.97974 1.02137 1.24425 0.96055 0.98081 1.01272 1.88036 1.07198 1.79981 1.35645 1.24816 0.99629 1.01437 0.98407 1.22509 0.94230 0.98341 1.02595 1.68184 1.07946 1.26187 1.26483 0.91362 0.88133 0.85451 0.86468 0.77397 0.91700 0.91548 0.86669 0.91726 0.88100 0.87432 0.88060 0.85333 0.87645 0.88222 0.89995 0.89783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -40.61 11.46 21.84 0.25 -40.36 16 2 C 0.03 1.39 5.50 85.29 0.47 1.85 16 3 Si 0.99 38.77 29.56 68.60 2.03 40.79 16 4 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 5 H -0.27 -10.03 7.11 99.48 0.71 -9.33 16 6 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 7 C -0.47 -26.35 9.14 23.46 0.21 -26.13 16 8 H 0.09 4.48 7.85 -2.91 -0.02 4.45 16 9 C 0.26 14.87 6.55 40.19 0.26 15.13 16 10 C -0.34 -17.68 9.83 22.87 0.22 -17.46 16 11 C -0.03 -1.36 10.15 22.39 0.23 -1.13 16 12 C -0.37 -16.13 8.87 22.73 0.20 -15.92 16 13 C 0.40 19.13 7.63 133.40 1.02 20.15 16 14 N -0.73 -28.04 5.25 -323.98 -1.70 -29.73 16 15 C 0.16 4.66 1.93 45.09 0.09 4.75 16 16 H 0.07 2.17 4.91 -2.39 -0.01 2.16 16 17 C -0.16 -4.27 5.64 30.68 0.17 -4.09 16 18 C 0.06 1.24 6.48 72.01 0.47 1.70 16 19 O -0.37 -7.69 10.15 -148.98 -1.51 -9.20 16 20 C 0.13 2.44 1.01 -10.27 -0.01 2.43 16 21 C -0.11 -1.66 5.50 31.37 0.17 -1.49 16 22 C -0.05 -0.71 7.52 72.70 0.55 -0.17 16 23 S -0.33 -7.01 23.22 -56.49 -1.31 -8.33 16 24 C -0.09 -1.94 5.54 72.30 0.40 -1.54 16 25 C -0.14 -3.14 4.01 30.78 0.12 -3.02 16 26 N -0.57 -31.77 7.89 -186.59 -1.47 -33.24 16 27 H 0.28 13.48 8.29 -92.71 -0.77 12.71 16 28 H 0.10 4.84 8.06 -2.91 -0.02 4.82 16 29 H 0.13 4.72 8.06 -2.91 -0.02 4.69 16 30 H 0.12 4.41 6.00 -2.91 -0.02 4.39 16 31 H 0.39 15.50 8.72 -92.70 -0.81 14.69 16 32 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.07 1.94 7.62 -2.39 -0.02 1.93 16 34 H 0.12 1.88 8.14 -2.38 -0.02 1.87 16 35 H 0.06 1.17 6.05 -2.39 -0.01 1.15 16 36 H 0.10 1.40 7.85 -2.39 -0.02 1.38 16 37 H 0.11 1.40 8.06 -2.39 -0.02 1.38 16 38 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.13 1.30 8.14 -2.38 -0.02 1.28 16 40 H 0.11 2.06 6.04 -2.39 -0.01 2.04 16 41 H 0.10 2.25 6.47 -2.39 -0.02 2.23 16 42 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -65.87 346.96 1.09 -64.78 By element: Atomic # 1 Polarization: 40.00 SS G_CDS: 0.23 Total: 40.23 kcal Atomic # 6 Polarization: -29.51 SS G_CDS: 4.58 Total: -24.94 kcal Atomic # 7 Polarization: -100.42 SS G_CDS: -2.92 Total: -103.34 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: -1.51 Total: -9.20 kcal Atomic # 14 Polarization: 38.77 SS G_CDS: 2.03 Total: 40.79 kcal Atomic # 16 Polarization: -7.01 SS G_CDS: -1.31 Total: -8.33 kcal Total: -65.87 1.09 -64.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647144283.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.272 kcal (2) G-P(sol) polarization free energy of solvation -65.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds