Wall clock time and date at job start Tue Mar 31 2020 12:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47258 * 2 1 4 4 C 1.50692 * 109.47188 * 179.97438 * 3 2 1 5 5 C 1.37481 * 122.45299 * 265.02870 * 4 3 2 6 6 C 1.36650 * 113.29647 * 179.97438 * 5 4 3 7 7 C 1.46578 * 125.45456 * 179.97438 * 6 5 4 8 8 O 1.21701 * 120.00160 * 352.14012 * 7 6 5 9 9 N 1.34780 * 119.99817 * 172.14140 * 7 6 5 10 10 C 1.46491 * 120.00276 * 1.95570 * 9 7 6 11 11 C 1.50702 * 109.47503 * 82.22335 * 10 9 7 12 12 H 1.08003 * 119.99393 * 0.02562 * 11 10 9 13 13 C 1.37874 * 120.00350 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99830 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00076 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47279 * 59.99961 * 15 13 11 17 17 H 1.48503 * 109.47016 * 179.97438 * 15 13 11 18 18 H 1.48492 * 109.47136 * 299.99663 * 15 13 11 19 19 C 1.46500 * 119.99589 * 181.95167 * 9 7 6 20 20 C 1.53007 * 109.47021 * 85.09592 * 19 9 7 21 21 C 1.47197 * 109.46743 * 179.97438 * 20 19 9 22 22 N 9.13196 * 134.14970 * 306.99182 * 4 1 2 23 23 S 1.75825 * 109.08466 * 359.97438 * 6 5 4 24 24 C 1.33819 * 122.44960 * 84.73643 * 4 3 2 25 25 C 1.50705 * 124.52000 * 0.02562 * 24 4 3 26 26 H 1.08999 * 109.46564 * 299.99723 * 1 2 3 27 27 H 1.09003 * 109.46837 * 59.99606 * 1 2 3 28 28 H 1.08994 * 109.46868 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.46987 * 240.00627 * 2 1 3 30 30 H 1.08998 * 109.47527 * 120.00535 * 2 1 3 31 31 H 1.09008 * 109.46609 * 60.00396 * 3 2 1 32 32 H 1.08998 * 109.47289 * 300.00681 * 3 2 1 33 33 H 1.07995 * 123.34639 * 0.02562 * 5 4 3 34 34 H 1.08995 * 109.47600 * 202.23158 * 10 9 7 35 35 H 1.09004 * 109.47251 * 322.22590 * 10 9 7 36 36 H 0.96998 * 120.00041 * 179.97438 * 14 13 11 37 37 H 1.09002 * 109.46974 * 205.09093 * 19 9 7 38 38 H 1.08998 * 109.47673 * 325.08901 * 19 9 7 39 39 H 1.08994 * 109.46633 * 299.99361 * 20 19 9 40 40 H 1.08996 * 109.47144 * 59.99605 * 20 19 9 41 41 H 1.09000 * 109.46842 * 89.99520 * 25 24 4 42 42 H 1.08995 * 109.46676 * 209.99365 * 25 24 4 43 43 H 1.08992 * 109.46999 * 329.99888 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.2843 1.5432 1.1567 6 6 5.6334 1.5237 0.9407 7 6 6.6624 1.6147 1.9806 8 8 6.3461 1.8604 3.1298 9 7 7.9589 1.4262 1.6641 10 6 8.3441 1.1729 0.2736 11 6 8.4416 2.4817 -0.4671 12 1 8.2375 3.4095 0.0468 13 6 8.7915 2.4948 -1.8007 14 7 9.0405 1.3651 -2.4262 15 14 8.9130 4.1172 -2.7185 16 1 9.9361 4.9770 -2.0709 17 1 9.3034 3.8604 -4.1281 18 1 7.5969 4.8040 -2.6862 19 6 8.9828 1.4748 2.7107 20 6 9.0992 0.1011 3.3744 21 6 10.1285 0.1497 4.4256 22 7 10.9244 0.1843 5.2336 23 16 5.9373 1.3721 -0.7845 24 6 4.2655 1.3387 -1.1235 25 6 3.6765 1.2118 -2.5049 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.6768 1.9563 0.8901 32 1 1.6767 1.9564 -0.8899 33 1 3.8411 1.6283 2.1378 34 1 9.3104 0.6693 0.2502 35 1 7.5937 0.5414 -0.2021 36 1 9.2863 1.3742 -3.3645 37 1 9.9413 1.7471 2.2688 38 1 8.7035 2.2171 3.4583 39 1 8.1408 -0.1712 3.8163 40 1 9.3787 -0.6412 2.6268 41 1 3.5349 2.2046 -2.9320 42 1 4.3535 0.6375 -3.1371 43 1 2.7152 0.7018 -2.4445 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078350162.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:39 Heat of formation + Delta-G solvation = 0.387747 kcal Electronic energy + Delta-G solvation = -24590.036780 eV Core-core repulsion = 21147.316261 eV Total energy + Delta-G solvation = -3442.720519 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.34530 -38.09011 -36.66444 -35.30320 -33.91528 -33.20198 -31.76478 -30.88558 -28.17913 -27.46313 -25.80418 -23.94568 -23.36200 -22.27494 -21.31097 -19.04377 -17.62298 -17.58368 -17.21879 -16.72262 -15.79844 -15.38420 -14.79876 -14.70618 -14.42931 -14.37758 -14.05017 -13.79750 -13.33902 -13.15916 -12.93107 -12.72775 -12.57289 -12.37649 -12.33615 -12.27607 -12.02525 -11.75207 -11.74160 -11.43512 -11.39071 -11.17826 -11.05612 -10.84726 -10.78049 -10.71134 -10.50298 -10.33451 -10.04910 -9.34419 -9.13986 -8.82355 -8.16645 -7.74414 -7.47083 -6.44131 -4.46458 1.32098 2.51555 2.81987 2.93095 2.96704 2.99497 3.14269 3.18229 3.22599 3.62727 3.90039 4.15793 4.35272 4.90993 5.06839 5.11741 5.16900 5.23734 5.29375 5.41632 5.49817 5.58401 5.63453 5.72996 5.84681 5.87608 5.89371 5.95219 6.02203 6.09718 6.12317 6.19580 6.22786 6.31636 6.37020 6.46098 6.63216 6.80251 7.01189 7.16202 7.23989 7.51756 7.67753 7.68394 8.03498 8.53032 8.82154 9.14280 10.60189 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.009252 B = 0.005400 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3025.518772 B = 5183.706264 C = 7631.221451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.055 4.055 4 C -0.139 4.139 5 C -0.070 4.070 6 C -0.297 4.297 7 C 0.594 3.406 8 O -0.563 6.563 9 N -0.598 5.598 10 C 0.225 3.775 11 C -0.540 4.540 12 H 0.069 0.931 13 C 0.078 3.922 14 N -0.876 5.876 15 Si 0.890 3.110 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.270 1.270 19 C 0.130 3.870 20 C -0.047 4.047 21 C 0.222 3.778 22 N -0.450 5.450 23 S 0.400 5.600 24 C -0.293 4.293 25 C -0.077 4.077 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.133 0.867 34 H 0.055 0.945 35 H 0.045 0.955 36 H 0.271 0.729 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.681 -3.360 -0.855 10.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.094 4.094 4 C -0.151 4.151 5 C -0.105 4.105 6 C -0.418 4.418 7 C 0.384 3.616 8 O -0.445 6.445 9 N -0.329 5.329 10 C 0.103 3.897 11 C -0.582 4.582 12 H 0.088 0.912 13 C -0.128 4.128 14 N -0.512 5.512 15 Si 0.716 3.284 16 H -0.198 1.198 17 H -0.208 1.208 18 H -0.195 1.195 19 C 0.005 3.995 20 C -0.089 4.089 21 C -0.096 4.096 22 N -0.127 5.127 23 S 0.678 5.322 24 C -0.413 4.413 25 C -0.135 4.135 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.151 0.849 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.081 0.919 37 H 0.109 0.891 38 H 0.101 0.899 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.310 -3.373 -0.218 8.053 hybrid contribution -1.531 0.972 -0.135 1.818 sum -8.841 -2.401 -0.353 9.168 Atomic orbital electron populations 1.21795 0.96343 1.01217 1.01540 1.21510 0.94829 0.97047 1.02245 1.20208 0.91080 0.96395 1.01698 1.18275 0.95969 1.09162 0.91710 1.20201 0.91159 1.00465 0.98683 1.24502 0.97282 1.20528 0.99509 1.17053 0.81779 0.76011 0.86750 1.90717 1.81988 1.51158 1.20633 1.47999 1.05074 1.69797 1.09983 1.19748 0.97177 0.97530 0.75231 1.21464 1.48227 0.93102 0.95414 0.91242 1.24873 0.93907 0.96874 0.97170 1.69884 1.44057 1.25681 1.11573 0.86640 0.79359 0.83571 0.78827 1.19752 1.20776 1.19498 1.21117 0.93007 0.94272 0.91108 1.19802 0.94396 1.01878 0.92796 1.29031 0.93773 0.92933 0.93885 1.81126 1.11284 1.08843 1.11447 1.85988 0.92118 1.58706 0.95366 1.25590 1.07418 1.09065 0.99212 1.20215 1.00207 1.01703 0.91369 0.92896 0.92987 0.93067 0.92043 0.91994 0.91902 0.91886 0.84929 0.92659 0.93815 0.91870 0.89110 0.89910 0.87120 0.87035 0.91717 0.91826 0.91705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 37.16 0.37 -1.06 16 2 C -0.12 -1.36 5.85 -26.73 -0.16 -1.52 16 3 C -0.05 -0.71 4.82 -27.89 -0.13 -0.84 16 4 C -0.14 -2.25 5.04 -106.45 -0.54 -2.78 16 5 C -0.07 -1.25 9.79 -40.43 -0.40 -1.65 16 6 C -0.30 -5.76 6.23 -36.79 -0.23 -5.99 16 7 C 0.59 11.91 7.53 -12.90 -0.10 11.81 16 8 O -0.56 -12.13 16.50 5.19 0.09 -12.04 16 9 N -0.60 -11.06 2.49 -176.64 -0.44 -11.50 16 10 C 0.23 4.55 4.72 -5.20 -0.02 4.52 16 11 C -0.54 -12.12 6.94 -34.44 -0.24 -12.36 16 12 H 0.07 1.64 7.81 -52.48 -0.41 1.23 16 13 C 0.08 1.78 5.01 -17.82 -0.09 1.69 16 14 N -0.88 -20.51 13.29 55.43 0.74 -19.77 16 15 Si 0.89 18.53 29.54 -169.99 -5.02 13.50 16 16 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 17 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 18 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 19 C 0.13 2.00 5.30 -4.04 -0.02 1.98 16 20 C -0.05 -0.60 5.99 -29.52 -0.18 -0.77 16 21 C 0.22 3.11 15.43 -20.80 -0.32 2.79 16 22 N -0.45 -7.36 18.53 42.10 0.78 -6.57 16 23 S 0.40 7.58 15.80 -107.50 -1.70 5.89 16 24 C -0.29 -4.89 6.28 -35.86 -0.23 -5.11 16 25 C -0.08 -1.06 9.71 36.01 0.35 -0.71 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.72 7.21 -51.92 -0.37 0.35 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.78 8.10 -51.92 -0.42 0.36 16 32 H 0.06 0.77 7.48 -51.93 -0.39 0.39 16 33 H 0.13 2.27 8.06 -52.49 -0.42 1.85 16 34 H 0.06 1.13 8.01 -51.93 -0.42 0.71 16 35 H 0.05 0.92 4.50 -22.36 -0.10 0.82 16 36 H 0.27 6.15 8.31 -40.82 -0.34 5.81 16 37 H 0.09 1.34 8.03 -51.93 -0.42 0.92 16 38 H 0.08 1.32 7.55 -51.93 -0.39 0.93 16 39 H 0.11 1.39 8.14 -51.93 -0.42 0.96 16 40 H 0.11 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.06 0.78 6.37 -51.93 -0.33 0.44 16 LS Contribution 372.57 15.07 5.61 5.61 Total: -1.00 -25.99 372.57 -8.06 -34.05 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -6.19 Total: 0.82 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: -1.93 Total: -9.99 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: 1.08 Total: -37.84 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.09 Total: -12.04 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.02 Total: 13.50 kcal Atomic # 16 Polarization: 7.58 SS G_CDS: -1.70 Total: 5.89 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -25.99 -8.06 -34.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078350162.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.438 kcal (2) G-P(sol) polarization free energy of solvation -25.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds